File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110132ms, 91.77% of 120008ms total Dropped 1163 nodes (cum <= 600.04ms) flat flat% sum% cum cum% 0 0% 0% 119990ms 100% __libc_start_call_main 0 0% 0% 119990ms 100% __libc_start_main_impl 0 0% 0% 119990ms 100% _start 0 0% 0% 119987ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119987ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119987ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119987ms 100% main 0 0% 0% 119950ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119950ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119950ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119950ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119950ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119950ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 4ms 0.0033% 0.0033% 118686ms 98.90% AbstractCardiacProblem::Solve 6ms 0.005% 0.0083% 117882ms 98.23% AbstractDynamicLinearPdeSolver::Solve 4ms 0.0033% 0.012% 66240ms 55.20% LinearSystem::Solve 5ms 0.0042% 0.016% 65742ms 54.78% KSPSolve 13ms 0.011% 0.027% 65739ms 54.78% KSPSolve_Private 13ms 0.011% 0.037% 65288ms 54.40% KSPSolve_SYMMLQ 224ms 0.19% 0.22% 42761ms 35.63% AbstractCardiacTissue::SolveCellSystems 4ms 0.0033% 0.23% 36723ms 30.60% PCApply 5ms 0.0042% 0.23% 36704ms 30.58% PCApply_BJacobi_Singleblock 0 0% 0.23% 34034ms 28.36% KSPSolve_PREONLY (partial-inline) 3ms 0.0025% 0.23% 32943ms 27.45% PCApply_ICC 8ms 0.0067% 0.24% 32940ms 27.45% MatSolve 32433ms 27.03% 27.27% 32932ms 27.44% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1497ms 1.25% 28.51% 32817ms 27.35% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00083% 28.51% 31765ms 26.47% KSP_PCApply.lto_priv.18 6893ms 5.74% 34.26% 28207ms 23.50% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 9ms 0.0075% 34.27% 22347ms 18.62% MatMult 289ms 0.24% 34.51% 22338ms 18.61% MatMult_SeqAIJ (partial-inline) 21824ms 18.19% 52.69% 22338ms 18.61% MatMult_SeqAIJ_Inode (inline) 2007ms 1.67% 54.36% 14582ms 12.15% CardiacNewtonSolver::Solve 399ms 0.33% 54.70% 9117ms 7.60% AbstractCardiacTissue::UpdateCaches (inline) 2085ms 1.74% 56.43% 8533ms 7.11% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4301ms 3.58% 60.02% 8501ms 7.08% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1055ms 0.88% 60.90% 7749ms 6.46% BidomainSolver::SetupLinearSystem 1089ms 0.91% 61.81% 7280ms 6.07% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 61.81% 6929ms 5.77% KSP_PCApply (partial-inline) 5ms 0.0042% 61.81% 6379ms 5.32% KSPConvergedDefault 5905ms 4.92% 66.73% 5905ms 4.92% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3878ms 3.23% 69.96% 3921ms 3.27% __ieee754_log_fma 0 0% 69.96% 3675ms 3.06% boost::numeric::ublas::norm_inf (inline) 2499ms 2.08% 72.04% 3675ms 3.06% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.04% 3675ms 3.06% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.04% 3675ms 3.06% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3450ms 2.87% 74.92% 3450ms 2.87% __memcpy_avx_unaligned_erms 0 0% 74.92% 3410ms 2.84% PetscMemcpy (inline) 15ms 0.012% 74.93% 3356ms 2.80% MatNullSpaceRemove 30ms 0.025% 74.96% 3185ms 2.65% std::pow (inline) 369ms 0.31% 75.26% 3149ms 2.62% __pow 25ms 0.021% 75.28% 2952ms 2.46% VecCopy 1713ms 1.43% 76.71% 2924ms 2.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2ms 0.0017% 76.71% 2924ms 2.44% VecCopy_Seq (partial-inline) 2887ms 2.41% 79.12% 2887ms 2.41% ddot_ 360ms 0.3% 79.42% 2762ms 2.30% __ieee754_pow_fma 21ms 0.017% 79.44% 2539ms 2.12% VecAXPY 6ms 0.005% 79.44% 2518ms 2.10% VecAXPY_Seq 2505ms 2.09% 81.53% 2505ms 2.09% daxpy_ 5ms 0.0042% 81.53% 2330ms 1.94% VecDot 1ms 0.00083% 81.53% 2325ms 1.94% VecDot_Seq 0 0% 81.53% 2324ms 1.94% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.54% 2057ms 1.71% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.54% 1878ms 1.56% VecMDot 14ms 0.012% 81.55% 1876ms 1.56% VecMXDot_Private 1853ms 1.54% 83.09% 1861ms 1.55% VecMDot_Seq 30ms 0.025% 83.12% 1717ms 1.43% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1571ms 1.31% 84.43% 1628ms 1.36% exp_inline (inline) 10ms 0.0083% 84.44% 1463ms 1.22% VecMAXPY 1448ms 1.21% 85.64% 1453ms 1.21% VecMAXPY_Seq 0 0% 85.64% 1406ms 1.17% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1351ms 1.13% 86.77% 1351ms 1.13% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1215ms 1.01% 87.78% 1215ms 1.01% __memset_avx2_unaligned_erms 1ms 0.00083% 87.78% 1207ms 1.01% PetscMemzero (inline) 10ms 0.0083% 87.79% 1154ms 0.96% boost::numeric::ublas::matrix_assign (inline) 232ms 0.19% 87.98% 1138ms 0.95% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.98% 1112ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 87.98% 1112ms 0.93% CuboidMeshConstructor::Construct 3ms 0.0025% 87.98% 1112ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 828ms 0.69% 88.67% 1089ms 0.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 88.67% 1085ms 0.9% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.67% 1085ms 0.9% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.67% 1085ms 0.9% boost_numeric_ublas_abs (inline) 1085ms 0.9% 89.58% 1085ms 0.9% std::abs (inline) 2ms 0.0017% 89.58% 1001ms 0.83% Element::Element 2ms 0.0017% 89.58% 981ms 0.82% VecDuplicate 2ms 0.0017% 89.58% 963ms 0.8% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00083% 89.58% 919ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 7ms 0.0058% 89.59% 891ms 0.74% BidomainAssembler::ComputeMatrixTerm 5ms 0.0042% 89.59% 846ms 0.7% boost::numeric::ublas::c_matrix::c_matrix (inline) 832ms 0.69% 90.29% 832ms 0.69% [libchaste_heart.so] 13ms 0.011% 90.30% 812ms 0.68% PetscMallocA 3ms 0.0025% 90.30% 810ms 0.67% VecNorm 11ms 0.0092% 90.31% 806ms 0.67% VecScale 0 0% 90.31% 800ms 0.67% VecNorm_Seq 10ms 0.0083% 90.32% 799ms 0.67% PetscMallocAlign (partial-inline) 1ms 0.00083% 90.32% 795ms 0.66% VecScale_Seq 790ms 0.66% 90.98% 790ms 0.66% dscal_ 1ms 0.00083% 90.98% 770ms 0.64% AbstractBidomainSolver::FinaliseLinearSystem 221ms 0.18% 91.16% 767ms 0.64% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.00083% 91.16% 741ms 0.62% BidomainProblem::WriteOneStep 727ms 0.61% 91.77% 727ms 0.61% log_inline (inline) 0 0% 91.77% 651ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 1ms 0.00083% 91.77% 635ms 0.53% VecDuplicate_Seq