File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3679ms, 86.36% of 4260ms total Dropped 445 nodes (cum <= 21.30ms) flat flat% sum% cum cum% 0 0% 0% 4253ms 99.84% __libc_start_call_main 0 0% 0% 4253ms 99.84% __libc_start_main_impl 0 0% 0% 4253ms 99.84% _start 0 0% 0% 4250ms 99.77% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4250ms 99.77% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4250ms 99.77% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4250ms 99.77% main 0 0% 0% 4213ms 98.90% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4213ms 98.90% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4213ms 98.90% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 2ms 0.047% 0.047% 4207ms 98.76% AbstractCardiacProblem::Solve 3ms 0.07% 0.12% 4197ms 98.52% AbstractDynamicLinearPdeSolver::Solve 9ms 0.21% 0.33% 2362ms 55.45% AbstractCardiacTissue::SolveCellSystems 0 0% 0.33% 1514ms 35.54% LinearSystem::Solve 0 0% 0.33% 1465ms 34.39% KSPSolve 3ms 0.07% 0.4% 1465ms 34.39% KSPSolve_Private 4ms 0.094% 0.49% 1414ms 33.19% KSPSolve_SYMMLQ 32ms 0.75% 1.24% 1388ms 32.58% AbstractCardiacCell::ComputeExceptVoltage 32ms 0.75% 2.00% 1182ms 27.75% AbstractOneStepIvpOdeSolver::InternalSolve 54ms 1.27% 3.26% 997ms 23.40% EulerIvpOdeSolver::CalculateNextYValue 273ms 6.41% 9.67% 923ms 21.67% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1ms 0.023% 9.69% 865ms 20.31% PCApply 0 0% 9.69% 854ms 20.05% PCApply_BJacobi_Singleblock 386ms 9.06% 18.76% 824ms 19.34% __GI___exp 32ms 0.75% 19.51% 768ms 18.03% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 19.51% 715ms 16.78% KSPSolve_PREONLY (partial-inline) 261ms 6.13% 25.63% 710ms 16.67% CellLuoRudy1991FromCellML::GetIIonic 8ms 0.19% 25.82% 667ms 15.66% MatSolve 0 0% 25.82% 667ms 15.66% PCApply_ICC 647ms 15.19% 41.01% 649ms 15.23% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 41.01% 606ms 14.23% KSP_PCApply.lto_priv.18 4ms 0.094% 41.10% 440ms 10.33% MatMult 4ms 0.094% 41.20% 428ms 10.05% MatMult_SeqAIJ 415ms 9.74% 50.94% 428ms 10.05% MatMult_SeqAIJ_Inode (inline) 388ms 9.11% 60.05% 417ms 9.79% __ieee754_exp_fma 5ms 0.12% 60.16% 345ms 8.10% KSPConvergedDefault 0 0% 60.16% 331ms 7.77% KSP_PCApply (partial-inline) 47ms 1.10% 61.27% 277ms 6.50% BidomainSolver::SetupLinearSystem 3ms 0.07% 61.34% 214ms 5.02% std::pow (inline) 18ms 0.42% 61.76% 211ms 4.95% __pow 27ms 0.63% 62.39% 193ms 4.53% __ieee754_pow_fma 71ms 1.67% 64.06% 155ms 3.64% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.023% 64.08% 125ms 2.93% MatNullSpaceRemove 0 0% 64.08% 121ms 2.84% VecDuplicate 90ms 2.11% 66.20% 90ms 2.11% log_inline (inline) 0 0% 66.20% 82ms 1.92% VecMDot 6ms 0.14% 66.34% 82ms 1.92% VecMXDot_Private 22ms 0.52% 66.85% 75ms 1.76% MPI_Wtime 4ms 0.094% 66.95% 72ms 1.69% VecDuplicate_MPI 72ms 1.69% 68.64% 72ms 1.69% exp_inline (inline) 39ms 0.92% 69.55% 65ms 1.53% TimeStepper::TimeStepper 8ms 0.19% 69.74% 61ms 1.43% PetscLogEventBeginDefault 8ms 0.19% 69.93% 56ms 1.31% VecCopy 31ms 0.73% 70.66% 55ms 1.29% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 54ms 1.27% 71.92% 55ms 1.29% VecMDot_Seq 54ms 1.27% 73.19% 54ms 1.27% ddot_ 14ms 0.33% 73.52% 53ms 1.24% PetscLogEventEndDefault 53ms 1.24% 74.77% 53ms 1.24% [[vdso]] 0 0% 74.77% 53ms 1.24% __GI___clock_gettime 5ms 0.12% 74.88% 52ms 1.22% VecAXPY 7ms 0.16% 75.05% 51ms 1.20% PetscMallocA 1ms 0.023% 75.07% 49ms 1.15% VecDuplicate_Seq 3ms 0.07% 75.14% 48ms 1.13% VecCreate_MPI_Private 39ms 0.92% 76.06% 45ms 1.06% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 2ms 0.047% 76.10% 44ms 1.03% PetscMallocAlign (partial-inline) 2ms 0.047% 76.15% 42ms 0.99% VecMAXPY 2ms 0.047% 76.20% 42ms 0.99% VecNorm 41ms 0.96% 77.16% 41ms 0.96% __memcpy_avx_unaligned_erms 3ms 0.07% 77.23% 40ms 0.94% VecCreate 40ms 0.94% 78.17% 40ms 0.94% [libchaste_heart.so] 39ms 0.92% 79.08% 39ms 0.92% TimeStepper::CalculateNextTime 2ms 0.047% 79.13% 38ms 0.89% VecDot 32ms 0.75% 79.88% 37ms 0.87% AbstractOneStepIvpOdeSolver::Solve 36ms 0.85% 80.73% 37ms 0.87% __ieee754_log_fma 2ms 0.047% 80.77% 36ms 0.85% VecAXPY_Seq 1ms 0.023% 80.80% 35ms 0.82% VecNorm_Seq 35ms 0.82% 81.62% 35ms 0.82% std::isinf (inline) 34ms 0.8% 82.42% 34ms 0.8% daxpy_ 0 0% 82.42% 33ms 0.77% CxxTest::RealWorldDescription::setUp 0 0% 82.42% 33ms 0.77% PetscInitialize 0 0% 82.42% 33ms 0.77% PetscMemcpy (inline) 0 0% 82.42% 33ms 0.77% PetscSetup::setUpWorld 0 0% 82.42% 33ms 0.77% PetscSetupUtils::CommonSetup 0 0% 82.42% 33ms 0.77% PetscSetupUtils::InitialisePetsc 1ms 0.023% 82.44% 33ms 0.77% VecDestroy 7ms 0.16% 82.61% 32ms 0.75% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 82.61% 32ms 0.75% PMPI_Init_thread 10ms 0.23% 82.84% 32ms 0.75% TimeStepper::AdvanceOneTimeStep 0 0% 82.84% 32ms 0.75% ompi_mpi_init 8ms 0.19% 83.03% 31ms 0.73% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 83.03% 31ms 0.73% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 83.03% 31ms 0.73% VecDot_Seq 0 0% 83.03% 31ms 0.73% VecXDot_Seq_Private.constprop.0 12ms 0.28% 83.31% 31ms 0.73% top12 (inline) 16ms 0.38% 83.69% 30ms 0.7% AbstractCardiacCell::GetVoltage (partial-inline) 11ms 0.26% 83.94% 30ms 0.7% std::__cxx11::basic_string::basic_string 24ms 0.56% 84.51% 29ms 0.68% AbstractParameterisedSystem::GetAnyVariable 0 0% 84.51% 29ms 0.68% PetscMemzero (inline) 0 0% 84.51% 28ms 0.66% VecCopy_Seq (partial-inline) 28ms 0.66% 85.16% 28ms 0.66% __memset_avx2_unaligned_erms 1ms 0.023% 85.19% 27ms 0.63% VecSetType 25ms 0.59% 85.77% 26ms 0.61% VecMAXPY_Seq 1ms 0.023% 85.80% 25ms 0.59% 2ms 0.047% 85.85% 25ms 0.59% VecStashCreate_Private 0 0% 85.85% 22ms 0.52% VecCreate_Seq 22ms 0.52% 86.36% 22ms 0.52% asuint64 (inline) 0 0% 86.36% 22ms 0.52% orte_init