File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109927ms, 91.85% of 119677ms total Dropped 1136 nodes (cum <= 598.38ms) flat flat% sum% cum cum% 0 0% 0% 119660ms 100% __libc_start_call_main 0 0% 0% 119660ms 100% __libc_start_main_impl 0 0% 0% 119660ms 100% _start 0 0% 0% 119657ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119657ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119657ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119657ms 100% main 0 0% 0% 119621ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119621ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119621ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119621ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119621ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119621ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 3ms 0.0025% 0.0025% 118379ms 98.92% AbstractCardiacProblem::Solve 8ms 0.0067% 0.0092% 117621ms 98.28% AbstractDynamicLinearPdeSolver::Solve 0 0% 0.0092% 66027ms 55.17% LinearSystem::Solve 0 0% 0.0092% 65528ms 54.75% KSPSolve 12ms 0.01% 0.019% 65528ms 54.75% KSPSolve_Private 8ms 0.0067% 0.026% 65097ms 54.39% KSPSolve_SYMMLQ 198ms 0.17% 0.19% 42935ms 35.88% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.19% 37106ms 31.01% PCApply 5ms 0.0042% 0.2% 37101ms 31.00% PCApply_BJacobi_Singleblock 2ms 0.0017% 0.2% 34471ms 28.80% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.2% 33307ms 27.83% PCApply_ICC 11ms 0.0092% 0.21% 33305ms 27.83% MatSolve 32766ms 27.38% 27.59% 33294ms 27.82% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1416ms 1.18% 28.77% 32891ms 27.48% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 4ms 0.0033% 28.77% 32086ms 26.81% KSP_PCApply.lto_priv.18 6954ms 5.81% 34.59% 28384ms 23.72% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 2ms 0.0017% 34.59% 21838ms 18.25% MatMult 225ms 0.19% 34.78% 21836ms 18.25% MatMult_SeqAIJ (partial-inline) 21325ms 17.82% 52.59% 21835ms 18.24% MatMult_SeqAIJ_Inode (inline) 2022ms 1.69% 54.28% 14825ms 12.39% CardiacNewtonSolver::Solve 314ms 0.26% 54.55% 9247ms 7.73% AbstractCardiacTissue::UpdateCaches (inline) 2023ms 1.69% 56.24% 8713ms 7.28% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4413ms 3.69% 59.92% 8708ms 7.28% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1103ms 0.92% 60.85% 7593ms 6.34% BidomainSolver::SetupLinearSystem 1081ms 0.9% 61.75% 7188ms 6.01% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2ms 0.0017% 61.75% 7091ms 5.93% KSP_PCApply (partial-inline) 4ms 0.0033% 61.75% 6491ms 5.42% KSPConvergedDefault 5831ms 4.87% 66.63% 5831ms 4.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3981ms 3.33% 69.95% 4018ms 3.36% __ieee754_log_fma 0 0% 69.95% 3697ms 3.09% boost::numeric::ublas::norm_inf (inline) 2445ms 2.04% 72.00% 3697ms 3.09% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.00% 3697ms 3.09% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.00% 3697ms 3.09% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 9ms 0.0075% 72.00% 3485ms 2.91% MatNullSpaceRemove 3343ms 2.79% 74.80% 3343ms 2.79% __memcpy_avx_unaligned_erms 0 0% 74.80% 3311ms 2.77% PetscMemcpy (inline) 26ms 0.022% 74.82% 3288ms 2.75% std::pow (inline) 391ms 0.33% 75.14% 3256ms 2.72% __pow 1766ms 1.48% 76.62% 2913ms 2.43% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 410ms 0.34% 76.96% 2859ms 2.39% __ieee754_pow_fma 23ms 0.019% 76.98% 2824ms 2.36% VecCopy 5ms 0.0042% 76.99% 2798ms 2.34% VecCopy_Seq (partial-inline) 2737ms 2.29% 79.27% 2737ms 2.29% ddot_ 11ms 0.0092% 79.28% 2471ms 2.06% VecAXPY 9ms 0.0075% 79.29% 2460ms 2.06% VecAXPY_Seq 2437ms 2.04% 81.33% 2437ms 2.04% daxpy_ 4ms 0.0033% 81.33% 2233ms 1.87% VecDot 1ms 0.00084% 81.33% 2229ms 1.86% VecDot_Seq 0 0% 81.33% 2228ms 1.86% VecXDot_Seq_Private.constprop.0 4ms 0.0033% 81.33% 2078ms 1.74% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.34% 1990ms 1.66% VecMDot 6ms 0.005% 81.34% 1988ms 1.66% VecMXDot_Private 1970ms 1.65% 82.99% 1979ms 1.65% VecMDot_Seq 36ms 0.03% 83.02% 1728ms 1.44% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1579ms 1.32% 84.34% 1643ms 1.37% exp_inline (inline) 6ms 0.005% 84.34% 1486ms 1.24% VecMAXPY 1472ms 1.23% 85.57% 1480ms 1.24% VecMAXPY_Seq 1478ms 1.23% 86.81% 1478ms 1.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.81% 1425ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 86.81% 1157ms 0.97% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.81% 1157ms 0.97% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.81% 1157ms 0.97% boost_numeric_ublas_abs (inline) 1157ms 0.97% 87.77% 1157ms 0.97% std::abs (inline) 1118ms 0.93% 88.71% 1118ms 0.93% __memset_avx2_unaligned_erms 2ms 0.0017% 88.71% 1106ms 0.92% KSP_RemoveNullSpace (inline) 0 0% 88.71% 1104ms 0.92% PetscMemzero (inline) 0 0% 88.71% 1093ms 0.91% CuboidMeshConstructor::Construct 0 0% 88.71% 1092ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 3ms 0.0025% 88.71% 1092ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 5ms 0.0042% 88.72% 1075ms 0.9% boost::numeric::ublas::matrix_assign (inline) 209ms 0.17% 88.89% 1065ms 0.89% boost::numeric::ublas::indexing_matrix_assign 787ms 0.66% 89.55% 1055ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1ms 0.00084% 89.55% 986ms 0.82% Element::Element 3ms 0.0025% 89.55% 983ms 0.82% AbstractTetrahedralElement::CalculateJacobian 5ms 0.0042% 89.56% 934ms 0.78% VecDuplicate 3ms 0.0025% 89.56% 924ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 10ms 0.0084% 89.57% 873ms 0.73% VecScale 10ms 0.0084% 89.57% 865ms 0.72% BidomainAssembler::ComputeMatrixTerm 2ms 0.0017% 89.58% 863ms 0.72% VecScale_Seq 863ms 0.72% 90.30% 863ms 0.72% [libchaste_heart.so] 861ms 0.72% 91.02% 861ms 0.72% dscal_ 7ms 0.0058% 91.02% 826ms 0.69% boost::numeric::ublas::c_matrix::c_matrix (inline) 10ms 0.0084% 91.03% 772ms 0.65% PetscMallocA 0 0% 91.03% 768ms 0.64% VecNorm 6ms 0.005% 91.04% 762ms 0.64% PetscMallocAlign (partial-inline) 1ms 0.00084% 91.04% 759ms 0.63% VecNorm_Seq 2ms 0.0017% 91.04% 747ms 0.62% AbstractBidomainSolver::FinaliseLinearSystem 232ms 0.19% 91.23% 744ms 0.62% AbstractBidomainSolver::CheckCompatibilityCondition 743ms 0.62% 91.85% 743ms 0.62% log_inline (inline) 0 0% 91.85% 707ms 0.59% BidomainProblem::WriteOneStep 0 0% 91.85% 653ms 0.55% AbstractFeAssemblerInterface::Assemble (inline)