File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110041ms, 91.97% of 119654ms total Dropped 1122 nodes (cum <= 598.27ms) flat flat% sum% cum cum% 0 0% 0% 119640ms 100% __libc_start_call_main 0 0% 0% 119640ms 100% __libc_start_main_impl 0 0% 0% 119640ms 100% _start 0 0% 0% 119637ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119637ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119637ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119637ms 100% main 0 0% 0% 119603ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119603ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119603ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119603ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119603ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119603ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 4ms 0.0033% 0.0033% 118344ms 98.91% AbstractCardiacProblem::Solve 4ms 0.0033% 0.0067% 117583ms 98.27% AbstractDynamicLinearPdeSolver::Solve 3ms 0.0025% 0.0092% 65857ms 55.04% LinearSystem::Solve 0 0% 0.0092% 65297ms 54.57% KSPSolve 12ms 0.01% 0.019% 65297ms 54.57% KSPSolve_Private 13ms 0.011% 0.03% 64890ms 54.23% KSPSolve_SYMMLQ 223ms 0.19% 0.22% 43038ms 35.97% AbstractCardiacTissue::SolveCellSystems 9ms 0.0075% 0.22% 37159ms 31.06% PCApply 3ms 0.0025% 0.23% 37145ms 31.04% PCApply_BJacobi_Singleblock 1ms 0.00084% 0.23% 34539ms 28.87% KSPSolve_PREONLY (partial-inline) 1ms 0.00084% 0.23% 33418ms 27.93% PCApply_ICC 2ms 0.0017% 0.23% 33417ms 27.93% MatSolve 32890ms 27.49% 27.72% 33415ms 27.93% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1393ms 1.16% 28.88% 33150ms 27.70% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 28.88% 32091ms 26.82% KSP_PCApply.lto_priv.18 6860ms 5.73% 34.62% 28637ms 23.93% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.0059% 34.62% 21616ms 18.07% MatMult 209ms 0.17% 34.80% 21609ms 18.06% MatMult_SeqAIJ (partial-inline) 21139ms 17.67% 52.46% 21609ms 18.06% MatMult_SeqAIJ_Inode (inline) 2007ms 1.68% 54.14% 15032ms 12.56% CardiacNewtonSolver::Solve 280ms 0.23% 54.38% 9026ms 7.54% AbstractCardiacTissue::UpdateCaches (inline) 4539ms 3.79% 58.17% 8759ms 7.32% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1990ms 1.66% 59.83% 8564ms 7.16% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1194ms 1% 60.83% 7725ms 6.46% BidomainSolver::SetupLinearSystem 1034ms 0.86% 61.69% 7242ms 6.05% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 61.69% 7072ms 5.91% KSP_PCApply (partial-inline) 8ms 0.0067% 61.70% 6508ms 5.44% KSPConvergedDefault 5950ms 4.97% 66.67% 5950ms 4.97% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3943ms 3.30% 69.97% 3982ms 3.33% __ieee754_log_fma 0 0% 69.97% 3879ms 3.24% boost::numeric::ublas::norm_inf (inline) 2635ms 2.20% 72.17% 3879ms 3.24% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.17% 3879ms 3.24% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.17% 3879ms 3.24% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 5ms 0.0042% 72.17% 3416ms 2.85% MatNullSpaceRemove 3158ms 2.64% 74.81% 3158ms 2.64% __memcpy_avx_unaligned_erms 21ms 0.018% 74.83% 3127ms 2.61% std::pow (inline) 379ms 0.32% 75.15% 3098ms 2.59% __pow 0 0% 75.15% 3097ms 2.59% PetscMemcpy (inline) 1793ms 1.50% 76.65% 2947ms 2.46% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2769ms 2.31% 78.96% 2769ms 2.31% ddot_ 346ms 0.29% 79.25% 2709ms 2.26% __ieee754_pow_fma 17ms 0.014% 79.26% 2608ms 2.18% VecCopy 2ms 0.0017% 79.27% 2589ms 2.16% VecCopy_Seq (partial-inline) 16ms 0.013% 79.28% 2582ms 2.16% VecAXPY 13ms 0.011% 79.29% 2566ms 2.14% VecAXPY_Seq 2536ms 2.12% 81.41% 2536ms 2.12% daxpy_ 3ms 0.0025% 81.41% 2213ms 1.85% VecDot 1ms 0.00084% 81.41% 2210ms 1.85% VecDot_Seq 4ms 0.0033% 81.42% 2209ms 1.85% VecXDot_Seq_Private.constprop.0 5ms 0.0042% 81.42% 2093ms 1.75% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.42% 1922ms 1.61% VecMDot 14ms 0.012% 81.43% 1920ms 1.60% VecMXDot_Private 1894ms 1.58% 83.02% 1902ms 1.59% VecMDot_Seq 27ms 0.023% 83.04% 1715ms 1.43% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1581ms 1.32% 84.36% 1639ms 1.37% exp_inline (inline) 1576ms 1.32% 85.68% 1576ms 1.32% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 4ms 0.0033% 85.68% 1489ms 1.24% VecMAXPY 1469ms 1.23% 86.91% 1485ms 1.24% VecMAXPY_Seq 0 0% 86.91% 1433ms 1.20% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 86.91% 1166ms 0.97% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.91% 1166ms 0.97% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.91% 1166ms 0.97% boost_numeric_ublas_abs (inline) 1166ms 0.97% 87.88% 1166ms 0.97% std::abs (inline) 4ms 0.0033% 87.89% 1123ms 0.94% boost::numeric::ublas::matrix_assign (inline) 1119ms 0.94% 88.82% 1119ms 0.94% __memset_avx2_unaligned_erms 0 0% 88.82% 1117ms 0.93% PetscMemzero (inline) 232ms 0.19% 89.02% 1113ms 0.93% boost::numeric::ublas::indexing_matrix_assign 0 0% 89.02% 1110ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 89.02% 1110ms 0.93% CuboidMeshConstructor::Construct 3ms 0.0025% 89.02% 1110ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 830ms 0.69% 89.71% 1080ms 0.9% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 4ms 0.0033% 89.72% 1010ms 0.84% Element::Element 2ms 0.0017% 89.72% 963ms 0.8% AbstractTetrahedralElement::CalculateJacobian 5ms 0.0042% 89.72% 934ms 0.78% VecScale 1ms 0.00084% 89.72% 930ms 0.78% AbstractTetrahedralElement::AbstractTetrahedralElement 3ms 0.0025% 89.72% 929ms 0.78% VecScale_Seq 924ms 0.77% 90.50% 924ms 0.77% dscal_ 3ms 0.0025% 90.50% 920ms 0.77% VecDuplicate 10ms 0.0084% 90.51% 902ms 0.75% BidomainAssembler::ComputeMatrixTerm 3ms 0.0025% 90.51% 857ms 0.72% VecNorm 0 0% 90.51% 846ms 0.71% VecNorm_Seq 9ms 0.0075% 90.52% 841ms 0.7% boost::numeric::ublas::c_matrix::c_matrix (inline) 834ms 0.7% 91.21% 834ms 0.7% [libchaste_heart.so] 11ms 0.0092% 91.22% 763ms 0.64% PetscMallocA 6ms 0.005% 91.23% 752ms 0.63% PetscMallocAlign (partial-inline) 0 0% 91.23% 711ms 0.59% BidomainProblem::WriteOneStep 686ms 0.57% 91.80% 686ms 0.57% log_inline (inline) 2ms 0.0017% 91.80% 672ms 0.56% AbstractBidomainSolver::FinaliseLinearSystem 194ms 0.16% 91.97% 667ms 0.56% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.97% 660ms 0.55% AbstractFeAssemblerInterface::Assemble (inline) 0 0% 91.97% 600ms 0.5% boost::numeric::ublas::matrix_slice::operator= (inline)