File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3744ms, 87.48% of 4280ms total Dropped 492 nodes (cum <= 21.40ms) flat flat% sum% cum cum% 0 0% 0% 4271ms 99.79% __libc_start_call_main 0 0% 0% 4271ms 99.79% __libc_start_main_impl 0 0% 0% 4271ms 99.79% _start 0 0% 0% 4268ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4268ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4268ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4268ms 99.72% main 0 0% 0% 4227ms 98.76% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4227ms 98.76% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4227ms 98.76% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 2ms 0.047% 0.047% 4219ms 98.57% AbstractCardiacProblem::Solve 2ms 0.047% 0.093% 4204ms 98.22% AbstractDynamicLinearPdeSolver::Solve 12ms 0.28% 0.37% 2057ms 48.06% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.4% 1775ms 41.47% LinearSystem::Solve 1ms 0.023% 0.42% 1735ms 40.54% KSPSolve 3ms 0.07% 0.49% 1735ms 40.54% KSPSolve_Private 1ms 0.023% 0.51% 1677ms 39.18% KSPSolve_CG 46ms 1.07% 1.59% 1349ms 31.52% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 271ms 6.33% 7.92% 1208ms 28.22% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 2ms 0.047% 7.97% 965ms 22.55% PCApply 0 0% 7.97% 951ms 22.22% PCApply_BJacobi_Singleblock 0 0% 7.97% 788ms 18.41% KSPSolve_PREONLY (partial-inline) 0 0% 7.97% 753ms 17.59% KSP_PCApply.lto_priv.7 5ms 0.12% 8.08% 741ms 17.31% MatSolve 0 0% 8.08% 741ms 17.31% PCApply_ICC 727ms 16.99% 25.07% 732ms 17.10% MatSolve_SeqSBAIJ_1_NaturalOrdering 12ms 0.28% 25.35% 629ms 14.70% AbstractCardiacTissue::UpdateCaches (inline) 5ms 0.12% 25.47% 618ms 14.44% MatMult 17ms 0.4% 25.86% 605ms 14.14% MatMult_SeqAIJ (partial-inline) 586ms 13.69% 39.56% 605ms 14.14% MatMult_SeqAIJ_Inode (inline) 137ms 3.20% 42.76% 576ms 13.46% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 70ms 1.64% 44.39% 566ms 13.22% CardiacNewtonSolver::Solve 195ms 4.56% 48.95% 334ms 7.80% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 56ms 1.31% 50.26% 302ms 7.06% BidomainSolver::SetupLinearSystem 74ms 1.73% 51.99% 302ms 7.06% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 3ms 0.07% 52.06% 286ms 6.68% KSPConvergedDefault 0 0% 52.06% 279ms 6.52% KSP_PCApply (partial-inline) 24ms 0.56% 52.62% 238ms 5.56% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 220ms 5.14% 57.76% 220ms 5.14% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 0 0% 57.76% 207ms 4.84% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 43ms 1.00% 58.76% 207ms 4.84% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 3ms 0.07% 58.83% 205ms 4.79% std::pow (inline) 22ms 0.51% 59.35% 201ms 4.70% __pow 27ms 0.63% 59.98% 172ms 4.02% __ieee754_pow_fma 156ms 3.64% 63.62% 159ms 3.71% __ieee754_log_fma 0 0% 63.62% 139ms 3.25% boost::numeric::ublas::norm_inf (inline) 89ms 2.08% 65.70% 139ms 3.25% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 65.70% 139ms 3.25% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 65.70% 139ms 3.25% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 67ms 1.57% 67.27% 135ms 3.15% __GI___exp 1ms 0.023% 67.29% 122ms 2.85% MatNullSpaceRemove 118ms 2.76% 70.05% 118ms 2.76% ddot_ 0 0% 70.05% 110ms 2.57% VecDuplicate 99ms 2.31% 72.36% 100ms 2.34% exp_inline (inline) 62ms 1.45% 73.81% 91ms 2.13% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2ms 0.047% 73.86% 91ms 2.13% VecTDot 24ms 0.56% 74.42% 89ms 2.08% MPI_Wtime 0 0% 74.42% 82ms 1.92% VecTDot_Seq 0 0% 74.42% 82ms 1.92% VecXDot_Seq_Private.constprop.0 1ms 0.023% 74.44% 81ms 1.89% VecMDot 4ms 0.093% 74.53% 80ms 1.87% VecMXDot_Private 2ms 0.047% 74.58% 65ms 1.52% VecNorm 65ms 1.52% 76.10% 65ms 1.52% [[vdso]] 0 0% 76.10% 65ms 1.52% __GI___clock_gettime 18ms 0.42% 76.52% 61ms 1.43% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 76.52% 61ms 1.43% AbstractBidomainSolver::FinaliseLinearSystem 7ms 0.16% 76.68% 60ms 1.40% PetscLogEventBeginDefault 3ms 0.07% 76.75% 60ms 1.40% VecDuplicate_Seq 54ms 1.26% 78.01% 55ms 1.29% VecMDot_Seq 11ms 0.26% 78.27% 54ms 1.26% PetscLogEventEndDefault 1ms 0.023% 78.29% 52ms 1.21% VecNorm_Seq 1ms 0.023% 78.32% 50ms 1.17% VecDuplicate_MPI 0 0% 78.32% 50ms 1.17% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 78.32% 50ms 1.17% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 78.32% 50ms 1.17% boost_numeric_ublas_abs (inline) 50ms 1.17% 79.49% 50ms 1.17% std::abs (inline) 49ms 1.14% 80.63% 49ms 1.14% [libchaste_heart.so] 2ms 0.047% 80.68% 48ms 1.12% VecCreate 9ms 0.21% 80.89% 45ms 1.05% PetscMallocA 43ms 1.00% 81.89% 43ms 1.00% log_inline (inline) 2ms 0.047% 81.94% 40ms 0.93% VecMAXPY 1ms 0.023% 81.96% 39ms 0.91% VecDestroy 39ms 0.91% 82.87% 39ms 0.91% [libm.so.6] 30ms 0.7% 83.57% 39ms 0.91% __ieee754_exp_fma 6ms 0.14% 83.71% 37ms 0.86% VecCopy 0 0% 83.71% 36ms 0.84% CxxTest::RealWorldDescription::setUp 0 0% 83.71% 36ms 0.84% PetscInitialize 4ms 0.093% 83.81% 36ms 0.84% PetscMallocAlign 0 0% 83.81% 36ms 0.84% PetscSetup::setUpWorld 0 0% 83.81% 36ms 0.84% PetscSetupUtils::CommonSetup 0 0% 83.81% 36ms 0.84% PetscSetupUtils::InitialisePetsc 0 0% 83.81% 35ms 0.82% PMPI_Init_thread 0 0% 83.81% 35ms 0.82% ompi_mpi_init 15ms 0.35% 84.16% 32ms 0.75% AbstractCardiacCell::SetVoltage 32ms 0.75% 84.91% 32ms 0.75% DistributedVector::Iterator::operator!= 1ms 0.023% 84.93% 30ms 0.7% VecCreate_MPI_Private 2ms 0.047% 84.98% 29ms 0.68% 5ms 0.12% 85.09% 28ms 0.65% __GI___libc_malloc 27ms 0.63% 85.72% 27ms 0.63% VecMAXPY_Seq 21ms 0.49% 86.21% 27ms 0.63% _int_malloc 26ms 0.61% 86.82% 26ms 0.61% ReplicatableVector::operator[] 2ms 0.047% 86.87% 25ms 0.58% VecSetType 1ms 0.023% 86.89% 24ms 0.56% __posix_memalign 23ms 0.54% 87.43% 23ms 0.54% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 87.43% 23ms 0.54% orte_init 0 0% 87.43% 22ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.047% 87.48% 22ms 0.51% VecAXPY 0 0% 87.48% 22ms 0.51% VecNorm_MPI 0 0% 87.48% 22ms 0.51% VecNorm_MPI_Default.constprop.0