File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 2818ms, 85.19% of 3308ms total Dropped 439 nodes (cum <= 16.54ms) flat flat% sum% cum cum% 0 0% 0% 3301ms 99.79% __libc_start_call_main 0 0% 0% 3301ms 99.79% __libc_start_main_impl 0 0% 0% 3301ms 99.79% _start 0 0% 0% 3299ms 99.73% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3299ms 99.73% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3299ms 99.73% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3299ms 99.73% main 0 0% 0% 3261ms 98.58% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3261ms 98.58% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3261ms 98.58% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 2ms 0.06% 0.06% 3254ms 98.37% AbstractCardiacProblem::Solve 0 0% 0.06% 3243ms 98.04% AbstractDynamicLinearPdeSolver::Solve 2ms 0.06% 0.12% 1722ms 52.06% LinearSystem::Solve 0 0% 0.12% 1676ms 50.67% KSPSolve 2ms 0.06% 0.18% 1676ms 50.67% KSPSolve_Private 0 0% 0.18% 1641ms 49.61% KSPSolve_CG 18ms 0.54% 0.73% 1236ms 37.36% AbstractCardiacTissue::SolveCellSystems 3ms 0.091% 0.82% 1036ms 31.32% PCApply 0 0% 0.82% 1031ms 31.17% PCApply_BJacobi_Singleblock 0 0% 0.82% 866ms 26.18% KSPSolve_PREONLY (partial-inline) 0 0% 0.82% 850ms 25.70% KSP_PCApply.lto_priv.7 4ms 0.12% 0.94% 816ms 24.67% MatSolve 0 0% 0.94% 816ms 24.67% PCApply_ICC 24ms 0.73% 1.66% 813ms 24.58% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 802ms 24.24% 25.91% 807ms 24.40% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 150ms 4.53% 30.44% 738ms 22.31% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 6ms 0.18% 30.62% 460ms 13.91% MatMult 36ms 1.09% 31.71% 446ms 13.48% MatMult_SeqAIJ (partial-inline) 405ms 12.24% 43.95% 421ms 12.73% MatMult_SeqAIJ_Inode (inline) 6ms 0.18% 44.14% 370ms 11.19% AbstractCardiacTissue::UpdateCaches (inline) 95ms 2.87% 47.01% 347ms 10.49% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 37ms 1.12% 48.13% 318ms 9.61% CardiacNewtonSolver::Solve 2ms 0.06% 48.19% 274ms 8.28% KSPConvergedDefault 0 0% 48.19% 257ms 7.77% KSP_PCApply (partial-inline) 62ms 1.87% 50.06% 249ms 7.53% BidomainSolver::SetupLinearSystem 113ms 3.42% 53.48% 207ms 6.26% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 18ms 0.54% 54.02% 192ms 5.80% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 32ms 0.97% 54.99% 179ms 5.41% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 54.99% 165ms 4.99% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 27ms 0.82% 55.80% 165ms 4.99% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 140ms 4.23% 60.04% 140ms 4.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 0 0% 60.04% 122ms 3.69% MatNullSpaceRemove 116ms 3.51% 63.54% 116ms 3.51% ddot_ 14ms 0.42% 63.97% 111ms 3.36% __pow 0 0% 63.97% 111ms 3.36% std::pow (inline) 106ms 3.20% 67.17% 106ms 3.20% __ieee754_log_fma 34ms 1.03% 68.20% 96ms 2.90% __GI___exp 20ms 0.6% 68.80% 96ms 2.90% __ieee754_pow_fma 1ms 0.03% 68.83% 95ms 2.87% VecDuplicate 0 0% 68.83% 79ms 2.39% VecMDot 4ms 0.12% 68.95% 79ms 2.39% VecMXDot_Private 18ms 0.54% 69.50% 78ms 2.36% MPI_Wtime 4ms 0.12% 69.62% 78ms 2.36% VecTDot 1ms 0.03% 69.65% 75ms 2.27% VecNorm 0 0% 69.65% 69ms 2.09% VecTDot_Seq 0 0% 69.65% 69ms 2.09% VecXDot_Seq_Private.constprop.0 0 0% 69.65% 69ms 2.09% boost::numeric::ublas::norm_inf (inline) 44ms 1.33% 70.98% 69ms 2.09% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 70.98% 69ms 2.09% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 70.98% 69ms 2.09% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 2ms 0.06% 71.04% 62ms 1.87% VecNorm_Seq 12ms 0.36% 71.40% 60ms 1.81% PetscLogEventBeginDefault 2ms 0.06% 71.46% 60ms 1.81% __GI___clock_gettime 58ms 1.75% 73.22% 58ms 1.75% [[vdso]] 55ms 1.66% 74.88% 57ms 1.72% exp_inline (inline) 11ms 0.33% 75.21% 56ms 1.69% PetscLogEventEndDefault 0 0% 75.21% 55ms 1.66% VecDuplicate_Seq 55ms 1.66% 76.87% 55ms 1.66% VecMDot_Seq 6ms 0.18% 77.06% 46ms 1.39% VecCreate 28ms 0.85% 77.90% 43ms 1.30% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 3ms 0.091% 77.99% 43ms 1.30% VecMAXPY 1ms 0.03% 78.02% 39ms 1.18% VecDuplicate_MPI 7ms 0.21% 78.23% 37ms 1.12% PetscMallocA 0 0% 78.23% 36ms 1.09% VecNorm_MPI 0 0% 78.23% 36ms 1.09% VecNorm_MPI_Default.constprop.0 0 0% 78.23% 35ms 1.06% CxxTest::RealWorldDescription::setUp 0 0% 78.23% 35ms 1.06% PMPI_Init_thread 0 0% 78.23% 35ms 1.06% PetscInitialize 0 0% 78.23% 35ms 1.06% PetscSetup::setUpWorld 0 0% 78.23% 35ms 1.06% PetscSetupUtils::CommonSetup 0 0% 78.23% 35ms 1.06% PetscSetupUtils::InitialisePetsc 1ms 0.03% 78.26% 35ms 1.06% VecDestroy 0 0% 78.26% 35ms 1.06% ompi_mpi_init 3ms 0.091% 78.36% 34ms 1.03% VecCopy 34ms 1.03% 79.38% 34ms 1.03% [libm.so.6] 26ms 0.79% 80.17% 33ms 1% __ieee754_exp_fma 11ms 0.33% 80.50% 31ms 0.94% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 80.50% 31ms 0.94% AbstractBidomainSolver::FinaliseLinearSystem 2ms 0.06% 80.56% 30ms 0.91% 1ms 0.03% 80.59% 30ms 0.91% PetscMallocAlign 1ms 0.03% 80.62% 27ms 0.82% VecAXPY 4ms 0.12% 80.74% 26ms 0.79% VecAYPX 26ms 0.79% 81.53% 26ms 0.79% [libchaste_heart.so] 0 0% 81.53% 25ms 0.76% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 81.53% 25ms 0.76% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 81.53% 25ms 0.76% boost_numeric_ublas_abs (inline) 25ms 0.76% 82.29% 25ms 0.76% std::abs (inline) 0 0% 82.29% 23ms 0.7% orte_init 1ms 0.03% 82.32% 22ms 0.67% VecCreate_MPI_Private 1ms 0.03% 82.35% 22ms 0.67% VecSetType 21ms 0.63% 82.98% 21ms 0.63% DistributedVector::Iterator::operator!= 17ms 0.51% 83.49% 21ms 0.63% VecMAXPY_Seq 8ms 0.24% 83.74% 20ms 0.6% PetscOptionsFindPair 19ms 0.57% 84.31% 19ms 0.57% DistributedVector::Stripe::operator[] (inline) 2ms 0.06% 84.37% 19ms 0.57% PetscHeaderDestroy_Private 0 0% 84.37% 19ms 0.57% VecAXPY_Seq 2ms 0.06% 84.43% 18ms 0.54% PetscHeaderCreate_Private 18ms 0.54% 84.98% 18ms 0.54% daxpy_ 0 0% 84.98% 17ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.03% 85.01% 17ms 0.51% PMPI_Comm_get_attr 0 0% 85.01% 17ms 0.51% PetscMemcpy (inline) 3ms 0.091% 85.10% 17ms 0.51% VecSet 2ms 0.06% 85.16% 17ms 0.51% __GI___libc_malloc 1ms 0.03% 85.19% 17ms 0.51% __posix_memalign