File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 94286ms, 91.78% of 102725ms total Dropped 1088 nodes (cum <= 513.62ms) flat flat% sum% cum cum% 0 0% 0% 102714ms 100% __libc_start_call_main 0 0% 0% 102714ms 100% __libc_start_main_impl 0 0% 0% 102714ms 100% _start 0 0% 0% 102712ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 102712ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 102712ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 102712ms 100% main 0 0% 0% 102679ms 100% CxxTest::RealTestDescription::run 0 0% 0% 102679ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 102679ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 102679ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 102679ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 102678ms 100% AbstractConvergenceTester::Converge 2ms 0.0019% 0.0019% 101747ms 99.05% AbstractCardiacProblem::Solve 7ms 0.0068% 0.0088% 100951ms 98.27% AbstractDynamicLinearPdeSolver::Solve 7ms 0.0068% 0.016% 57326ms 55.81% LinearSystem::Solve 3ms 0.0029% 0.018% 56846ms 55.34% KSPSolve 12ms 0.012% 0.03% 56844ms 55.34% KSPSolve_Private 20ms 0.019% 0.05% 56526ms 55.03% KSPSolve_SYMMLQ 329ms 0.32% 0.37% 36121ms 35.16% AbstractCardiacTissue::SolveCellSystems 3ms 0.0029% 0.37% 31133ms 30.31% PCApply 2ms 0.0019% 0.37% 31120ms 30.29% PCApply_BJacobi_Singleblock 0 0% 0.37% 29325ms 28.55% KSPSolve_PREONLY (partial-inline) 4ms 0.0039% 0.38% 28454ms 27.70% PCApply_ICC 7ms 0.0068% 0.39% 28450ms 27.70% MatSolve 28085ms 27.34% 27.73% 28443ms 27.69% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 821ms 0.8% 28.52% 28015ms 27.27% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 5ms 0.0049% 28.53% 26671ms 25.96% KSP_PCApply.lto_priv.18 5927ms 5.77% 34.30% 24573ms 23.92% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 4ms 0.0039% 34.30% 20618ms 20.07% MatMult 224ms 0.22% 34.52% 20614ms 20.07% MatMult_SeqAIJ (partial-inline) 20229ms 19.69% 54.21% 20613ms 20.07% MatMult_SeqAIJ_Inode (inline) 1782ms 1.73% 55.95% 12982ms 12.64% CardiacNewtonSolver::Solve 4116ms 4.01% 59.96% 7616ms 7.41% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 152ms 0.15% 60.10% 7040ms 6.85% AbstractCardiacTissue::UpdateCaches (inline) 1061ms 1.03% 61.14% 6750ms 6.57% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 924ms 0.9% 62.04% 6595ms 6.42% BidomainSolver::SetupLinearSystem 1325ms 1.29% 63.33% 6581ms 6.41% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1ms 0.00097% 63.33% 6103ms 5.94% KSP_PCApply (partial-inline) 3ms 0.0029% 63.33% 5686ms 5.54% KSPConvergedDefault 5439ms 5.29% 68.62% 5439ms 5.29% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3270ms 3.18% 71.81% 3338ms 3.25% __ieee754_log_fma 0 0% 71.81% 3225ms 3.14% boost::numeric::ublas::norm_inf (inline) 2220ms 2.16% 73.97% 3225ms 3.14% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 73.97% 3225ms 3.14% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 73.97% 3225ms 3.14% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 4ms 0.0039% 73.97% 2776ms 2.70% MatNullSpaceRemove 2597ms 2.53% 76.50% 2597ms 2.53% __memcpy_avx512_unaligned_erms 0 0% 76.50% 2562ms 2.49% PetscMemcpy (inline) 28ms 0.027% 76.53% 2518ms 2.45% std::pow (inline) 296ms 0.29% 76.82% 2477ms 2.41% __pow 1615ms 1.57% 78.39% 2464ms 2.40% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2410ms 2.35% 80.73% 2410ms 2.35% ddot_ 14ms 0.014% 80.75% 2232ms 2.17% VecCopy 2ms 0.0019% 80.75% 2214ms 2.16% VecCopy_Seq (partial-inline) 295ms 0.29% 81.04% 2160ms 2.10% __ieee754_pow_fma 17ms 0.017% 81.05% 1989ms 1.94% VecAXPY 3ms 0.0029% 81.06% 1972ms 1.92% VecAXPY_Seq 1960ms 1.91% 82.96% 1960ms 1.91% daxpy_ 7ms 0.0068% 82.97% 1950ms 1.90% VecDot 0 0% 82.97% 1943ms 1.89% VecDot_Seq 1ms 0.00097% 82.97% 1943ms 1.89% VecXDot_Seq_Private.constprop.0 2ms 0.0019% 82.97% 1769ms 1.72% VecMDot 10ms 0.0097% 82.98% 1767ms 1.72% VecMXDot_Private 1744ms 1.70% 84.68% 1750ms 1.70% VecMDot_Seq 0 0% 84.68% 1558ms 1.52% AbstractFeVolumeIntegralAssembler::DoAssemble 13ms 0.013% 84.69% 1283ms 1.25% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1165ms 1.13% 85.83% 1212ms 1.18% exp_inline (inline) 0 0% 85.83% 1075ms 1.05% AbstractFeAssemblerInterface::AssembleMatrix (inline) 4ms 0.0039% 85.83% 1003ms 0.98% VecMAXPY 0 0% 85.83% 1000ms 0.97% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 85.83% 1000ms 0.97% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 85.83% 1000ms 0.97% boost_numeric_ublas_abs (inline) 1000ms 0.97% 86.81% 1000ms 0.97% std::abs (inline) 997ms 0.97% 87.78% 999ms 0.97% VecMAXPY_Seq 1ms 0.00097% 87.78% 817ms 0.8% boost::numeric::ublas::matrix_assign (inline) 192ms 0.19% 87.96% 814ms 0.79% boost::numeric::ublas::indexing_matrix_assign 528ms 0.51% 88.48% 788ms 0.77% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 88.48% 785ms 0.76% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.48% 785ms 0.76% CuboidMeshConstructor::Construct 2ms 0.0019% 88.48% 785ms 0.76% DistributedTetrahedralMesh::ConstructCuboid 763ms 0.74% 89.22% 763ms 0.74% [libchaste_heart.so] 1ms 0.00097% 89.22% 737ms 0.72% BidomainProblem::WriteOneStep 0 0% 89.22% 722ms 0.7% VecNorm 1ms 0.00097% 89.22% 709ms 0.69% VecNorm_Seq 1ms 0.00097% 89.23% 706ms 0.69% Element::Element 6ms 0.0058% 89.23% 703ms 0.68% VecScale 2ms 0.0019% 89.23% 697ms 0.68% VecScale_Seq 690ms 0.67% 89.91% 690ms 0.67% dscal_ 6ms 0.0058% 89.91% 684ms 0.67% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0019% 89.91% 646ms 0.63% BidomainAssembler::ComputeMatrixTerm 8ms 0.0078% 89.92% 637ms 0.62% boost::numeric::ublas::c_matrix::c_matrix (inline) 2ms 0.0019% 89.92% 636ms 0.62% AbstractTetrahedralElement::AbstractTetrahedralElement 623ms 0.61% 90.53% 623ms 0.61% log_inline (inline) 2ms 0.0019% 90.53% 598ms 0.58% AbstractBidomainSolver::FinaliseLinearSystem 188ms 0.18% 90.71% 594ms 0.58% AbstractBidomainSolver::CheckCompatibilityCondition 3ms 0.0029% 90.72% 559ms 0.54% VecDuplicate 546ms 0.53% 91.25% 546ms 0.53% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 543ms 0.53% 91.78% 543ms 0.53% __memset_avx512_unaligned_erms 0 0% 91.78% 535ms 0.52% PetscMemzero (inline) 3ms 0.0029% 91.78% 532ms 0.52% H5Dwrite 5ms 0.0049% 91.78% 517ms 0.5% H5D__write