File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 2131ms, 87.37% of 2439ms total Dropped 370 nodes (cum <= 12.20ms) flat flat% sum% cum cum% 0 0% 0% 2431ms 99.67% __libc_start_call_main 0 0% 0% 2431ms 99.67% __libc_start_main_impl 0 0% 0% 2431ms 99.67% _start 0 0% 0% 2429ms 99.59% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 2429ms 99.59% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 2429ms 99.59% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 2429ms 99.59% main 0 0% 0% 2388ms 97.91% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 2388ms 97.91% CxxTest::TestRunner::runTest (inline) 0 0% 0% 2388ms 97.91% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 2383ms 97.70% AbstractCardiacProblem::Solve 0 0% 0% 2374ms 97.33% AbstractDynamicLinearPdeSolver::Solve 10ms 0.41% 0.41% 1112ms 45.59% AbstractCardiacTissue::SolveCellSystems 0 0% 0.41% 1077ms 44.16% LinearSystem::Solve 0 0% 0.41% 1059ms 43.42% KSPSolve 2ms 0.082% 0.49% 1059ms 43.42% KSPSolve_Private 0 0% 0.49% 1022ms 41.90% KSPSolve_SYMMLQ 13ms 0.53% 1.03% 636ms 26.08% AbstractCardiacCell::ComputeExceptVoltage 2ms 0.082% 1.11% 631ms 25.87% PCApply 0 0% 1.11% 621ms 25.46% PCApply_BJacobi_Singleblock 6ms 0.25% 1.35% 554ms 22.71% AbstractOneStepIvpOdeSolver::InternalSolve 1ms 0.041% 1.39% 522ms 21.40% KSPSolve_PREONLY (partial-inline) 1ms 0.041% 1.44% 483ms 19.80% MatSolve 0 0% 1.44% 483ms 19.80% PCApply_ICC 40ms 1.64% 3.08% 480ms 19.68% EulerIvpOdeSolver::CalculateNextYValue 470ms 19.27% 22.35% 473ms 19.39% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1ms 0.041% 22.39% 466ms 19.11% KSP_PCApply.lto_priv.18 131ms 5.37% 27.76% 437ms 17.92% CellLuoRudy1991FromCellML::EvaluateYDerivatives 6ms 0.25% 28.00% 400ms 16.40% AbstractCardiacTissue::UpdateCaches (inline) 149ms 6.11% 34.11% 389ms 15.95% __GI___exp 135ms 5.54% 39.65% 384ms 15.74% CellLuoRudy1991FromCellML::GetIIonic 3ms 0.12% 39.77% 315ms 12.92% MatMult 3ms 0.12% 39.89% 308ms 12.63% MatMult_SeqAIJ 305ms 12.51% 52.40% 307ms 12.59% MatMult_SeqAIJ_Inode (inline) 0 0% 52.40% 231ms 9.47% KSP_PCApply (partial-inline) 1ms 0.041% 52.44% 230ms 9.43% KSPConvergedDefault 201ms 8.24% 60.68% 220ms 9.02% __ieee754_exp_fma 23ms 0.94% 61.62% 160ms 6.56% BidomainSolver::SetupLinearSystem 15ms 0.62% 62.24% 132ms 5.41% __pow 0 0% 62.24% 132ms 5.41% std::pow (inline) 0 0% 62.24% 118ms 4.84% MatNullSpaceRemove 12ms 0.49% 62.73% 117ms 4.80% __ieee754_pow_fma 0 0% 62.73% 81ms 3.32% VecMDot 3ms 0.12% 62.85% 81ms 3.32% VecMXDot_Private 17ms 0.7% 63.55% 79ms 3.24% MPI_Wtime 2ms 0.082% 63.63% 62ms 2.54% __GI___clock_gettime 61ms 2.50% 66.13% 61ms 2.50% [[vdso]] 3ms 0.12% 66.26% 57ms 2.34% PetscLogEventBeginDefault 6ms 0.25% 66.50% 55ms 2.26% PetscLogEventEndDefault 51ms 2.09% 68.59% 55ms 2.26% exp_inline (inline) 54ms 2.21% 70.81% 54ms 2.21% VecMDot_Seq 29ms 1.19% 72.00% 51ms 2.09% CellLuoRudy1991FromCellML::VerifyStateVariables 50ms 2.05% 74.05% 50ms 2.05% ddot_ 49ms 2.01% 76.06% 49ms 2.01% log_inline (inline) 0 0% 76.06% 45ms 1.85% VecDuplicate 0 0% 76.06% 39ms 1.60% KSP_RemoveNullSpace (inline) 0 0% 76.06% 38ms 1.56% CxxTest::RealWorldDescription::setUp 0 0% 76.06% 38ms 1.56% PMPI_Init_thread 0 0% 76.06% 38ms 1.56% PetscInitialize 0 0% 76.06% 38ms 1.56% PetscSetup::setUpWorld 0 0% 76.06% 38ms 1.56% PetscSetupUtils::CommonSetup 0 0% 76.06% 38ms 1.56% PetscSetupUtils::InitialisePetsc 0 0% 76.06% 38ms 1.56% ompi_mpi_init 5ms 0.21% 76.26% 37ms 1.52% VecMAXPY 1ms 0.041% 76.30% 35ms 1.44% 1ms 0.041% 76.34% 35ms 1.44% VecNorm 3ms 0.12% 76.47% 33ms 1.35% VecCopy 0 0% 76.47% 33ms 1.35% VecDot 0 0% 76.47% 31ms 1.27% VecNorm_Seq 0 0% 76.47% 27ms 1.11% VecDot_Seq 0 0% 76.47% 27ms 1.11% VecXDot_Seq_Private.constprop.0 3ms 0.12% 76.59% 26ms 1.07% PetscMallocA 0 0% 76.59% 26ms 1.07% VecDestroy 12ms 0.49% 77.08% 25ms 1.03% TimeStepper::TimeStepper 1ms 0.041% 77.12% 25ms 1.03% VecCreate 1ms 0.041% 77.16% 25ms 1.03% orte_init 12ms 0.49% 77.65% 23ms 0.94% AbstractOneStepIvpOdeSolver::Solve 0 0% 77.65% 23ms 0.94% PetscMallocAlign 0 0% 77.65% 23ms 0.94% VecDuplicate_Seq 1ms 0.041% 77.70% 22ms 0.9% VecDuplicate_MPI 22ms 0.9% 78.60% 22ms 0.9% [libchaste_heart.so] 22ms 0.9% 79.50% 22ms 0.9% __memcpy_avx512_unaligned_erms 11ms 0.45% 79.95% 21ms 0.86% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 79.95% 21ms 0.86% AbstractBidomainSolver::FinaliseLinearSystem 15ms 0.62% 80.57% 21ms 0.86% TimeStepper::AdvanceOneTimeStep 1ms 0.041% 80.61% 21ms 0.86% VecAXPY 0 0% 80.61% 20ms 0.82% VecNorm_MPI 0 0% 80.61% 20ms 0.82% VecNorm_MPI_Default.constprop.0 20ms 0.82% 81.43% 20ms 0.82% [libm.so.6] 20ms 0.82% 82.25% 20ms 0.82% __ieee754_log_fma 9ms 0.37% 82.62% 19ms 0.78% AbstractCardiacCell::SetVoltage (partial-inline) 3ms 0.12% 82.74% 19ms 0.78% __posix_memalign 18ms 0.74% 83.48% 18ms 0.74% TimeStepper::CalculateNextTime 14ms 0.57% 84.05% 17ms 0.7% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 6ms 0.25% 84.30% 17ms 0.7% __GI___libc_malloc 17ms 0.7% 84.99% 17ms 0.7% asuint64 (inline) 0 0% 84.99% 17ms 0.7% hwloc_topology_load 0 0% 84.99% 16ms 0.66% PetscMemcpy (inline) 15ms 0.62% 85.61% 16ms 0.66% VecMAXPY_Seq 0 0% 85.61% 16ms 0.66% __GI__dl_catch_exception 0 0% 85.61% 16ms 0.66% _dl_catch_error 0 0% 85.61% 16ms 0.66% _dlerror_run 7ms 0.29% 85.90% 16ms 0.66% top12 (inline) 6ms 0.25% 86.14% 15ms 0.62% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 3ms 0.12% 86.26% 15ms 0.62% PetscHeaderDestroy_Private 12ms 0.49% 86.76% 15ms 0.62% PetscStageLogGetCurrent 0 0% 86.76% 15ms 0.62% hwloc_linux_get_tid_last_cpu_location 0 0% 86.76% 15ms 0.62% mca_base_framework_open 0 0% 86.76% 15ms 0.62% opal_stackframe_output 14ms 0.57% 87.33% 14ms 0.57% ReplicatableVector::operator[] 0 0% 87.33% 14ms 0.57% VecMDot_MPI 0 0% 87.33% 14ms 0.57% VecMXDot_MPI_Default (inline) 1ms 0.041% 87.37% 13ms 0.53% VecAXPY_Seq 0 0% 87.37% 13ms 0.53% VecCopy_Seq (partial-inline) 0 0% 87.37% 13ms 0.53% ___dlopen 0 0% 87.37% 13ms 0.53% _dl_open 0 0% 87.37% 13ms 0.53% dl_open_worker 0 0% 87.37% 13ms 0.53% dlopen_doit 0 0% 87.37% 13ms 0.53% dlopen_implementation (inline) 0 0% 87.37% 13ms 0.53% mca_base_framework_components_register 0 0% 87.37% 13ms 0.53% mca_base_framework_register