File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 345ms, 91.27% of 378ms total Dropped 147 nodes (cum <= 1.89ms) flat flat% sum% cum cum% 0 0% 0% 371ms 98.15% __libc_start_call_main 0 0% 0% 371ms 98.15% __libc_start_main_impl 0 0% 0% 371ms 98.15% _start 0 0% 0% 368ms 97.35% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 368ms 97.35% CxxTest::TestRunner::runAllTests 0 0% 0% 368ms 97.35% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 368ms 97.35% main 0 0% 0% 333ms 88.10% CxxTest::RealTestDescription::run 0 0% 0% 333ms 88.10% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 333ms 88.10% CxxTest::TestRunner::runTest (inline) 0 0% 0% 333ms 88.10% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 333ms 88.10% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 330ms 87.30% AbstractCardiacProblem::Solve 0 0% 0% 326ms 86.24% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 295ms 78.04% LinearSystem::Solve 0 0% 0% 293ms 77.51% KSPSolve 0 0% 0% 293ms 77.51% KSPSolve_CG 0 0% 0% 293ms 77.51% KSPSolve_Private 0 0% 0% 160ms 42.33% KSP_PCApply.lto_priv.7 0 0% 0% 153ms 40.48% PCApply 0 0% 0% 153ms 40.48% PCApply_BJacobi_Singleblock 0 0% 0% 131ms 34.66% KSPSolve_PREONLY (partial-inline) 0 0% 0% 126ms 33.33% MatSolve 124ms 32.80% 32.80% 126ms 33.33% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 32.80% 126ms 33.33% PCApply_ICC 0 0% 32.80% 58ms 15.34% MatMult 0 0% 32.80% 58ms 15.34% MatMult_SeqAIJ 58ms 15.34% 48.15% 58ms 15.34% MatMult_SeqAIJ_Inode (inline) 56ms 14.81% 62.96% 56ms 14.81% ddot_ 0 0% 62.96% 46ms 12.17% VecTDot 0 0% 62.96% 46ms 12.17% VecTDot_Seq 0 0% 62.96% 46ms 12.17% VecXDot_Seq_Private.constprop.0 0 0% 62.96% 32ms 8.47% CxxTest::RealWorldDescription::setUp 0 0% 62.96% 32ms 8.47% PetscInitialize 0 0% 62.96% 32ms 8.47% PetscSetup::setUpWorld 0 0% 62.96% 32ms 8.47% PetscSetupUtils::CommonSetup 0 0% 62.96% 32ms 8.47% PetscSetupUtils::InitialisePetsc 0 0% 62.96% 31ms 8.20% PMPI_Init_thread 0 0% 62.96% 31ms 8.20% ompi_mpi_init 0 0% 62.96% 26ms 6.88% 0 0% 62.96% 25ms 6.61% AbstractCardiacTissue::SolveCellSystems 0 0% 62.96% 24ms 6.35% MatNullSpaceRemove 0 0% 62.96% 21ms 5.56% orte_init 0 0% 62.96% 14ms 3.70% VecMDot 1ms 0.26% 63.23% 14ms 3.70% VecMXDot_Private 0 0% 63.23% 14ms 3.70% hwloc_topology_load 0 0% 63.23% 13ms 3.44% AbstractCardiacCell::ComputeExceptVoltage 13ms 3.44% 66.67% 13ms 3.44% VecMDot_Seq 0 0% 66.67% 13ms 3.44% __GI__dl_catch_exception 0 0% 66.67% 13ms 3.44% _dl_catch_error 0 0% 66.67% 13ms 3.44% _dlerror_run 0 0% 66.67% 13ms 3.44% hwloc_linux_get_tid_last_cpu_location 0 0% 66.67% 12ms 3.17% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 66.67% 12ms 3.17% opal_stackframe_output 4ms 1.06% 67.72% 11ms 2.91% CellLuoRudy1991FromCellML::GetIIonic 0 0% 67.72% 11ms 2.91% VecNorm 0 0% 67.72% 11ms 2.91% VecNorm_Seq 0 0% 67.72% 11ms 2.91% mca_base_framework_components_register 0 0% 67.72% 11ms 2.91% mca_base_framework_open 0 0% 67.72% 11ms 2.91% mca_base_framework_register 1ms 0.26% 67.99% 10ms 2.65% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 67.99% 10ms 2.65% VecMAXPY 10ms 2.65% 70.63% 10ms 2.65% VecMAXPY_Seq 0 0% 70.63% 10ms 2.65% ___dlopen 0 0% 70.63% 10ms 2.65% _dl_init 0 0% 70.63% 10ms 2.65% _dl_open 0 0% 70.63% 10ms 2.65% call_init (inline) 0 0% 70.63% 10ms 2.65% dl_open_worker 0 0% 70.63% 10ms 2.65% dlopen_doit 0 0% 70.63% 10ms 2.65% dlopen_implementation (inline) 0 0% 70.63% 9ms 2.38% mca_base_component_find 0 0% 70.63% 9ms 2.38% mca_base_component_repository_open 3ms 0.79% 71.43% 8ms 2.12% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 71.43% 8ms 2.12% EulerIvpOdeSolver::CalculateNextYValue 0 0% 71.43% 8ms 2.12% KSP_PCApply (partial-inline) 0 0% 71.43% 8ms 2.12% VecAXPY 0 0% 71.43% 8ms 2.12% VecAXPY_Seq 8ms 2.12% 73.54% 8ms 2.12% daxpy_ 0 0% 73.54% 7ms 1.85% VecDuplicate 6ms 1.59% 75.13% 7ms 1.85% __GI___exp 0 0% 75.13% 7ms 1.85% _dl_start_user 0 0% 75.13% 7ms 1.85% dl_open_worker_begin 1ms 0.26% 75.40% 6ms 1.59% VecAYPX 6ms 1.59% 76.98% 6ms 1.59% __GI___libc_read 0 0% 76.98% 6ms 1.59% _dl_open_relocate_one_object (inline) 0 0% 76.98% 6ms 1.59% _dl_relocate_object 0 0% 76.98% 6ms 1.59% opal_hwloc_base_get_topology 0 0% 76.98% 6ms 1.59% orte_ess_base_proc_binding 2ms 0.53% 77.51% 5ms 1.32% BidomainSolver::SetupLinearSystem 5ms 1.32% 78.84% 5ms 1.32% VecAYPX_Seq 1ms 0.26% 79.10% 5ms 1.32% VecCreate 0 0% 79.10% 5ms 1.32% VecDuplicate_Seq 0 0% 79.10% 5ms 1.32% __ieee754_pow_fma 0 0% 79.10% 5ms 1.32% __pow 2ms 0.53% 79.63% 5ms 1.32% boost::serialization::singleton::get_instance 0 0% 79.63% 5ms 1.32% std::pow (inline) 0 0% 79.63% 4ms 1.06% KSPConvergedDefault 3ms 0.79% 80.42% 4ms 1.06% _int_malloc 1ms 0.26% 80.69% 4ms 1.06% elf_dynamic_do_Rela (inline) 0 0% 80.69% 4ms 1.06% mca_base_framework_components_open 0 0% 80.69% 4ms 1.06% mca_base_var_group_register 0 0% 80.69% 4ms 1.06% mca_topo_base_dist_graph_neighbors_count 0 0% 80.69% 3ms 0.79% AbstractCardiacProblem::Initialise 0 0% 80.69% 3ms 0.79% CxxTest::RealWorldDescription::tearDown 0 0% 80.69% 3ms 0.79% PetscFinalize 0 0% 80.69% 3ms 0.79% PetscMemcpy (inline) 0 0% 80.69% 3ms 0.79% PetscMemzero (inline) 0 0% 80.69% 3ms 0.79% PetscSetup::tearDownWorld 0 0% 80.69% 3ms 0.79% PetscSetupUtils::CommonFinalize 0 0% 80.69% 3ms 0.79% VecSet 0 0% 80.69% 3ms 0.79% VecSet_Seq (partial-inline) 0 0% 80.69% 3ms 0.79% XOpenDisplay 0 0% 80.69% 3ms 0.79% [hwloc_gl.so] 0 0% 80.69% 3ms 0.79% [hwloc_pci.so] 0 0% 80.69% 3ms 0.79% [libpciaccess.so.0.11.1] 0 0% 80.69% 3ms 0.79% [libxcb.so.1.1.0] 0 0% 80.69% 3ms 0.79% _XConnectXCB 3ms 0.79% 81.48% 3ms 0.79% __GI___clock_nanosleep 0 0% 81.48% 3ms 0.79% __GI___nanosleep 0 0% 81.48% 3ms 0.79% __GI_exit 0 0% 81.48% 3ms 0.79% __cxa_finalize 0 0% 81.48% 3ms 0.79% __dlclose 3ms 0.79% 82.28% 3ms 0.79% __memcpy_avx512_unaligned_erms 3ms 0.79% 83.07% 3ms 0.79% __memset_avx512_unaligned_erms 0 0% 83.07% 3ms 0.79% __run_exit_handlers 0 0% 83.07% 3ms 0.79% _dl_call_fini 0 0% 83.07% 3ms 0.79% _dl_close 1ms 0.26% 83.33% 3ms 0.79% _dl_close_worker (inline) 0 0% 83.33% 3ms 0.79% _dl_fini 0 0% 83.33% 3ms 0.79% _dl_lookup_symbol_x 0 0% 83.33% 3ms 0.79% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 83.33% 3ms 0.79% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 3ms 0.79% 84.13% 3ms 0.79% do_lookup_x 0 0% 84.13% 3ms 0.79% elf_machine_rela (inline) 0 0% 84.13% 3ms 0.79% mca_base_component_repository_release 0 0% 84.13% 3ms 0.79% mca_base_components_close 0 0% 84.13% 3ms 0.79% mca_base_var_register 0 0% 84.13% 3ms 0.79% ompi_mpi_finalize 0 0% 84.13% 3ms 0.79% opal_timer_base_get_freq 0 0% 84.13% 3ms 0.79% pci_get_strings 0 0% 84.13% 3ms 0.79% resolve_map (inline) 0 0% 84.13% 3ms 0.79% usleep 0 0% 84.13% 3ms 0.79% xcb_connect_to_display_with_auth_info 0 0% 84.13% 2ms 0.53% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 84.13% 2ms 0.53% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.53% 84.66% 2ms 0.53% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 84.66% 2ms 0.53% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 84.66% 2ms 0.53% KSPConvergedReasonViewFromOptions 1ms 0.26% 84.92% 2ms 0.53% PetscHeaderCreate_Private 1ms 0.26% 85.19% 2ms 0.53% PetscMallocA 2ms 0.53% 85.71% 2ms 0.53% PetscOptHash (inline) 0 0% 85.71% 2ms 0.53% PetscOptionsFindPair 0 0% 85.71% 2ms 0.53% PetscOptionsGetViewer 0 0% 85.71% 2ms 0.53% ProgressReporter::Update 0 0% 85.71% 2ms 0.53% VecDestroy 0 0% 85.71% 2ms 0.53% VecDuplicate_MPI 2ms 0.53% 86.24% 2ms 0.53% [libchaste_heart.so] 0 0% 86.24% 2ms 0.53% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 86.24% 2ms 0.53% __GI___libc_free 0 0% 86.24% 2ms 0.53% __GI___libc_malloc 2ms 0.53% 86.77% 2ms 0.53% __GI___libc_write 2ms 0.53% 87.30% 2ms 0.53% __GI___open64_nocancel 2ms 0.53% 87.83% 2ms 0.53% __GI_mprotect 2ms 0.53% 88.36% 2ms 0.53% __GI_munmap 0 0% 88.36% 2ms 0.53% ___asprintf_chk 2ms 0.53% 88.89% 2ms 0.53% __strlen_evex 0 0% 88.89% 2ms 0.53% __vasprintf_internal 2ms 0.53% 89.42% 2ms 0.53% _dl_fixup 0 0% 89.42% 2ms 0.53% _dl_protect_relro (inline) 0 0% 89.42% 2ms 0.53% _dl_runtime_resolve_xsavec 0 0% 89.42% 2ms 0.53% _dl_unmap 0 0% 89.42% 2ms 0.53% _dl_unmap_segments (inline) 0 0% 89.42% 2ms 0.53% _int_free 0 0% 89.42% 2ms 0.53% boost::serialization::extended_type_info_typeid::~extended_type_info_typeid (inline) 1ms 0.26% 89.68% 2ms 0.53% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 89.68% 2ms 0.53% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 2ms 0.53% 90.21% 2ms 0.53% exp_inline (inline) 0 0% 90.21% 2ms 0.53% kh_get_HO (inline) 2ms 0.53% 90.74% 2ms 0.53% log_inline (inline) 2ms 0.53% 91.27% 2ms 0.53% malloc_consolidate 0 0% 91.27% 2ms 0.53% mca_base_component_var_register 0 0% 91.27% 2ms 0.53% mca_base_framework_close 0 0% 91.27% 2ms 0.53% orte_finalize 0 0% 91.27% 2ms 0.53% std::__basic_file::xsputn 0 0% 91.27% 2ms 0.53% std::basic_filebuf::_M_convert_to_external 0 0% 91.27% 2ms 0.53% std::basic_filebuf::overflow 0 0% 91.27% 2ms 0.53% std::basic_filebuf::sync 0 0% 91.27% 2ms 0.53% std::endl (inline) 0 0% 91.27% 2ms 0.53% std::flush (inline) 0 0% 91.27% 2ms 0.53% std::ostream::flush 0 0% 91.27% 2ms 0.53% std::ostream::operator<< (inline)