File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 2921ms, 86.11% of 3392ms total Dropped 446 nodes (cum <= 16.96ms) flat flat% sum% cum cum% 0 0% 0% 3383ms 99.73% __libc_start_call_main 0 0% 0% 3383ms 99.73% __libc_start_main_impl 0 0% 0% 3383ms 99.73% _start 0 0% 0% 3381ms 99.68% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3381ms 99.68% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3381ms 99.68% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3381ms 99.68% main 0 0% 0% 3340ms 98.47% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3340ms 98.47% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3340ms 98.47% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 1ms 0.029% 0.029% 3333ms 98.26% AbstractCardiacProblem::Solve 0 0% 0.029% 3317ms 97.79% AbstractDynamicLinearPdeSolver::Solve 0 0% 0.029% 1765ms 52.03% LinearSystem::Solve 0 0% 0.029% 1735ms 51.15% KSPSolve 3ms 0.088% 0.12% 1735ms 51.15% KSPSolve_Private 2ms 0.059% 0.18% 1703ms 50.21% KSPSolve_CG 17ms 0.5% 0.68% 1253ms 36.94% AbstractCardiacTissue::SolveCellSystems 0 0% 0.68% 1060ms 31.25% PCApply 0 0% 0.68% 1052ms 31.01% PCApply_BJacobi_Singleblock 1ms 0.029% 0.71% 893ms 26.33% KSPSolve_PREONLY (partial-inline) 44ms 1.30% 2.00% 857ms 25.27% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.029% 2.03% 846ms 24.94% MatSolve 0 0% 2.03% 846ms 24.94% PCApply_ICC 832ms 24.53% 26.56% 839ms 24.73% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 26.56% 827ms 24.38% KSP_PCApply.lto_priv.7 147ms 4.33% 30.90% 761ms 22.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.21% 31.10% 506ms 14.92% MatMult 14ms 0.41% 31.52% 490ms 14.45% MatMult_SeqAIJ (partial-inline) 472ms 13.92% 45.43% 489ms 14.42% MatMult_SeqAIJ_Inode (inline) 42ms 1.24% 46.67% 343ms 10.11% CardiacNewtonSolver::Solve 4ms 0.12% 46.79% 341ms 10.05% AbstractCardiacTissue::UpdateCaches (inline) 2ms 0.059% 46.85% 331ms 9.76% KSPConvergedDefault 0 0% 46.85% 324ms 9.55% KSP_PCApply (partial-inline) 81ms 2.39% 49.23% 317ms 9.35% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 55ms 1.62% 50.85% 262ms 7.72% BidomainSolver::SetupLinearSystem 113ms 3.33% 54.19% 204ms 6.01% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 11ms 0.32% 54.51% 189ms 5.57% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 54.51% 170ms 5.01% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 38ms 1.12% 55.63% 170ms 5.01% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 25ms 0.74% 56.37% 169ms 4.98% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 139ms 4.10% 60.47% 139ms 4.10% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 1ms 0.029% 60.50% 139ms 4.10% MatNullSpaceRemove 118ms 3.48% 63.97% 118ms 3.48% ddot_ 105ms 3.10% 67.07% 107ms 3.15% __ieee754_log_fma 11ms 0.32% 67.39% 105ms 3.10% __pow 0 0% 67.39% 105ms 3.10% std::pow (inline) 41ms 1.21% 68.60% 104ms 3.07% __GI___exp 0 0% 68.60% 94ms 2.77% VecDuplicate 7ms 0.21% 68.81% 93ms 2.74% __ieee754_pow_fma 0 0% 68.81% 92ms 2.71% boost::numeric::ublas::norm_inf (inline) 60ms 1.77% 70.58% 92ms 2.71% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 70.58% 92ms 2.71% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 70.58% 92ms 2.71% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 1ms 0.029% 70.61% 88ms 2.59% VecMDot 5ms 0.15% 70.75% 87ms 2.56% VecMXDot_Private 1ms 0.029% 70.78% 78ms 2.30% VecNorm 19ms 0.56% 71.34% 74ms 2.18% MPI_Wtime 0 0% 71.34% 72ms 2.12% VecTDot 1ms 0.029% 71.37% 67ms 1.98% VecNorm_Seq 65ms 1.92% 73.29% 67ms 1.98% exp_inline (inline) 0 0% 73.29% 63ms 1.86% VecTDot_Seq 0 0% 73.29% 63ms 1.86% VecXDot_Seq_Private.constprop.0 10ms 0.29% 73.58% 60ms 1.77% PetscLogEventEndDefault 59ms 1.74% 75.32% 59ms 1.74% VecMDot_Seq 3ms 0.088% 75.41% 55ms 1.62% __GI___clock_gettime 7ms 0.21% 75.62% 54ms 1.59% PetscMallocA 52ms 1.53% 77.15% 52ms 1.53% [[vdso]] 9ms 0.27% 77.42% 51ms 1.50% PetscLogEventBeginDefault 5ms 0.15% 77.56% 50ms 1.47% VecMAXPY 32ms 0.94% 78.51% 48ms 1.42% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 0 0% 78.51% 48ms 1.42% VecDuplicate_Seq 2ms 0.059% 78.57% 47ms 1.39% PetscMallocAlign (partial-inline) 2ms 0.059% 78.63% 46ms 1.36% VecDuplicate_MPI 39ms 1.15% 79.78% 44ms 1.30% __ieee754_exp_fma 1ms 0.029% 79.81% 42ms 1.24% VecCreate 0 0% 79.81% 40ms 1.18% VecDestroy 0 0% 79.81% 37ms 1.09% CxxTest::RealWorldDescription::setUp 0 0% 79.81% 37ms 1.09% PMPI_Init_thread 0 0% 79.81% 37ms 1.09% PetscInitialize 0 0% 79.81% 37ms 1.09% PetscSetup::setUpWorld 0 0% 79.81% 37ms 1.09% PetscSetupUtils::CommonSetup 0 0% 79.81% 37ms 1.09% PetscSetupUtils::InitialisePetsc 37ms 1.09% 80.90% 37ms 1.09% [libchaste_heart.so] 0 0% 80.90% 37ms 1.09% ompi_mpi_init 0 0% 80.90% 33ms 0.97% 0 0% 80.90% 32ms 0.94% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 80.90% 32ms 0.94% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 80.90% 32ms 0.94% boost_numeric_ublas_abs (inline) 32ms 0.94% 81.84% 32ms 0.94% std::abs (inline) 30ms 0.88% 82.72% 30ms 0.88% DistributedVector::Iterator::operator!= 1ms 0.029% 82.75% 29ms 0.85% AbstractBidomainSolver::FinaliseLinearSystem 7ms 0.21% 82.96% 28ms 0.83% AbstractBidomainSolver::CheckCompatibilityCondition 4ms 0.12% 83.08% 28ms 0.83% __posix_memalign 0 0% 83.08% 27ms 0.8% VecSetType 26ms 0.77% 83.84% 26ms 0.77% VecMAXPY_Seq 2ms 0.059% 83.90% 25ms 0.74% VecCopy 1ms 0.029% 83.93% 23ms 0.68% VecCreate_Seq 0 0% 83.93% 23ms 0.68% VecNorm_MPI 0 0% 83.93% 23ms 0.68% VecNorm_MPI_Default.constprop.0 0 0% 83.93% 23ms 0.68% orte_init 22ms 0.65% 84.58% 22ms 0.65% [libm.so.6] 0 0% 84.58% 21ms 0.62% PetscMemzero (inline) 0 0% 84.58% 21ms 0.62% VecCreate_MPI_Private 5ms 0.15% 84.73% 21ms 0.62% __GI___libc_malloc 21ms 0.62% 85.35% 21ms 0.62% __memset_avx512_unaligned_erms 6ms 0.18% 85.52% 19ms 0.56% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#23}::operator() (inline) 0 0% 85.52% 18ms 0.53% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 85.52% 18ms 0.53% KSP_RemoveNullSpace (inline) 1ms 0.029% 85.55% 18ms 0.53% PetscHeaderDestroy_Private 2ms 0.059% 85.61% 17ms 0.5% PetscHeaderCreate_Private 17ms 0.5% 86.11% 17ms 0.5% log_inline (inline)