File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 2170ms, 86.25% of 2516ms total Dropped 405 nodes (cum <= 12.58ms) flat flat% sum% cum cum% 0 0% 0% 2508ms 99.68% __libc_start_call_main 0 0% 0% 2508ms 99.68% __libc_start_main_impl 0 0% 0% 2508ms 99.68% _start 0 0% 0% 2506ms 99.60% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 2506ms 99.60% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 2506ms 99.60% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 2506ms 99.60% main 0 0% 0% 2467ms 98.05% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 2467ms 98.05% CxxTest::TestRunner::runTest (inline) 0 0% 0% 2467ms 98.05% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 2461ms 97.81% AbstractCardiacProblem::Solve 0 0% 0% 2448ms 97.30% AbstractDynamicLinearPdeSolver::Solve 11ms 0.44% 0.44% 1444ms 57.39% AbstractCardiacTissue::SolveCellSystems 0 0% 0.44% 826ms 32.83% LinearSystem::Solve 18ms 0.72% 1.15% 813ms 32.31% AbstractCardiacCell::ComputeExceptVoltage 0 0% 1.15% 809ms 32.15% KSPSolve 2ms 0.079% 1.23% 809ms 32.15% KSPSolve_Private 0 0% 1.23% 784ms 31.16% KSPSolve_SYMMLQ 19ms 0.76% 1.99% 689ms 27.38% AbstractOneStepIvpOdeSolver::InternalSolve 45ms 1.79% 3.78% 580ms 23.05% EulerIvpOdeSolver::CalculateNextYValue 194ms 7.71% 11.49% 529ms 21.03% CellLuoRudy1991FromCellML::EvaluateYDerivatives 8ms 0.32% 11.80% 527ms 20.95% AbstractCardiacTissue::UpdateCaches (inline) 169ms 6.72% 18.52% 487ms 19.36% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.04% 18.56% 475ms 18.88% PCApply 1ms 0.04% 18.60% 469ms 18.64% PCApply_BJacobi_Singleblock 180ms 7.15% 25.76% 447ms 17.77% __GI___exp 0 0% 25.76% 390ms 15.50% KSPSolve_PREONLY (partial-inline) 0 0% 25.76% 371ms 14.75% KSP_PCApply.lto_priv.18 1ms 0.04% 25.79% 360ms 14.31% PCApply_ICC 0 0% 25.79% 359ms 14.27% MatSolve 349ms 13.87% 39.67% 354ms 14.07% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1ms 0.04% 39.71% 246ms 9.78% MatMult 218ms 8.66% 48.37% 246ms 9.78% __ieee754_exp_fma 29ms 1.15% 49.52% 240ms 9.54% MatMult_SeqAIJ 211ms 8.39% 57.91% 213ms 8.47% MatMult_SeqAIJ_Inode (inline) 20ms 0.79% 58.70% 168ms 6.68% __pow 0 0% 58.70% 168ms 6.68% std::pow (inline) 0 0% 58.70% 158ms 6.28% KSP_PCApply (partial-inline) 24ms 0.95% 59.66% 155ms 6.16% BidomainSolver::SetupLinearSystem 0 0% 59.66% 154ms 6.12% KSPConvergedDefault 11ms 0.44% 60.10% 148ms 5.88% __ieee754_pow_fma 0 0% 60.10% 92ms 3.66% MatNullSpaceRemove 36ms 1.43% 61.53% 71ms 2.82% CellLuoRudy1991FromCellML::VerifyStateVariables 65ms 2.58% 64.11% 67ms 2.66% exp_inline (inline) 66ms 2.62% 66.73% 66ms 2.62% log_inline (inline) 12ms 0.48% 67.21% 57ms 2.27% MPI_Wtime 0 0% 67.21% 57ms 2.27% VecMDot 1ms 0.04% 67.25% 57ms 2.27% VecMXDot_Private 10ms 0.4% 67.65% 46ms 1.83% PetscLogEventEndDefault 3ms 0.12% 67.77% 45ms 1.79% __GI___clock_gettime 0 0% 67.77% 43ms 1.71% VecDuplicate 42ms 1.67% 69.44% 42ms 1.67% [[vdso]] 22ms 0.87% 70.31% 41ms 1.63% TimeStepper::TimeStepper 38ms 1.51% 71.82% 41ms 1.63% VecMDot_Seq 41ms 1.63% 73.45% 41ms 1.63% [libchaste_heart.so] 9ms 0.36% 73.81% 38ms 1.51% PetscLogEventBeginDefault 0 0% 73.81% 36ms 1.43% CxxTest::RealWorldDescription::setUp 0 0% 73.81% 36ms 1.43% PetscInitialize 0 0% 73.81% 36ms 1.43% PetscSetup::setUpWorld 0 0% 73.81% 36ms 1.43% PetscSetupUtils::CommonSetup 0 0% 73.81% 36ms 1.43% PetscSetupUtils::InitialisePetsc 0 0% 73.81% 35ms 1.39% PMPI_Init_thread 2ms 0.079% 73.89% 35ms 1.39% VecMAXPY 0 0% 73.89% 35ms 1.39% ompi_mpi_init 1ms 0.04% 73.93% 29ms 1.15% 10ms 0.4% 74.32% 29ms 1.15% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 20ms 0.79% 75.12% 29ms 1.15% AbstractOneStepIvpOdeSolver::Solve 29ms 1.15% 76.27% 29ms 1.15% ddot_ 1ms 0.04% 76.31% 28ms 1.11% VecDestroy 8ms 0.32% 76.63% 26ms 1.03% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 76.63% 25ms 0.99% VecAXPY 0 0% 76.63% 25ms 0.99% VecDot 0 0% 76.63% 25ms 0.99% orte_init 22ms 0.87% 77.50% 25ms 0.99% top12 (inline) 0 0% 77.50% 24ms 0.95% PetscTimeSubtract (inline) 1ms 0.04% 77.54% 23ms 0.91% VecCopy 1ms 0.04% 77.58% 23ms 0.91% VecDuplicate_MPI 18ms 0.72% 78.30% 22ms 0.87% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 22ms 0.87% 79.17% 22ms 0.87% TimeStepper::CalculateNextTime 19ms 0.76% 79.93% 21ms 0.83% AbstractParameterisedSystem::GetAnyVariable 0 0% 79.93% 21ms 0.83% VecNorm 21ms 0.83% 80.76% 21ms 0.83% [libm.so.6] 2ms 0.079% 80.84% 20ms 0.79% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.04% 80.88% 20ms 0.79% VecDuplicate_Seq 0 0% 80.88% 20ms 0.79% VecNorm_Seq 20ms 0.79% 81.68% 20ms 0.79% __ieee754_log_fma 19ms 0.76% 82.43% 19ms 0.76% ReplicatableVector::operator[] 0 0% 82.43% 19ms 0.76% VecCreate 18ms 0.72% 83.15% 19ms 0.76% VecMAXPY_Seq 2ms 0.079% 83.23% 18ms 0.72% AbstractBidomainSolver::CheckCompatibilityCondition 10ms 0.4% 83.62% 18ms 0.72% AbstractCardiacCell::GetVoltage (partial-inline) 18ms 0.72% 84.34% 18ms 0.72% RegularStimulus::GetStimulus 18ms 0.72% 85.06% 18ms 0.72% __memcpy_avx512_unaligned_erms 0 0% 85.06% 17ms 0.68% VecDot_Seq 0 0% 85.06% 17ms 0.68% VecXDot_Seq_Private.constprop.0 0 0% 85.06% 16ms 0.64% PetscMallocA 3ms 0.12% 85.17% 16ms 0.64% PetscMallocAlign 0 0% 85.17% 16ms 0.64% hwloc_topology_load 0 0% 85.17% 15ms 0.6% hwloc_linux_get_tid_last_cpu_location 0 0% 85.17% 14ms 0.56% AbstractFeVolumeIntegralAssembler::DoAssemble 11ms 0.44% 85.61% 14ms 0.56% AbstractParameterisedSystem::SetAnyVariable 2ms 0.079% 85.69% 14ms 0.56% PetscHeaderDestroy_Private 0 0% 85.69% 14ms 0.56% PetscMemcpy (inline) 1ms 0.04% 85.73% 13ms 0.52% VecAXPY_Seq 0 0% 85.73% 13ms 0.52% __GI__dl_catch_exception 0 0% 85.73% 13ms 0.52% _dl_catch_error 0 0% 85.73% 13ms 0.52% _dlerror_run 0 0% 85.73% 13ms 0.52% mca_base_framework_open 13ms 0.52% 86.25% 13ms 0.52% std::vector::operator[] (inline)