File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 2024ms, 84.37% of 2399ms total Dropped 365 nodes (cum <= 11.99ms) flat flat% sum% cum cum% 0 0% 0% 2393ms 99.75% __libc_start_call_main 0 0% 0% 2393ms 99.75% __libc_start_main_impl 0 0% 0% 2393ms 99.75% _start 0 0% 0% 2391ms 99.67% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 2391ms 99.67% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 2391ms 99.67% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 2391ms 99.67% main 0 0% 0% 2356ms 98.21% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 2356ms 98.21% CxxTest::TestRunner::runTest (inline) 0 0% 0% 2356ms 98.21% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 2351ms 98.00% AbstractCardiacProblem::Solve 0 0% 0% 2344ms 97.71% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 1203ms 50.15% LinearSystem::Solve 0 0% 0% 1183ms 49.31% KSPSolve 1ms 0.042% 0.042% 1183ms 49.31% KSPSolve_Private 0 0% 0.042% 1156ms 48.19% KSPSolve_SYMMLQ 7ms 0.29% 0.33% 979ms 40.81% AbstractCardiacTissue::SolveCellSystems 0 0% 0.33% 727ms 30.30% PCApply 0 0% 0.33% 721ms 30.05% PCApply_BJacobi_Singleblock 0 0% 0.33% 618ms 25.76% KSPSolve_PREONLY (partial-inline) 6ms 0.25% 0.58% 581ms 24.22% AbstractCardiacCell::ComputeExceptVoltage 0 0% 0.58% 565ms 23.55% MatSolve 0 0% 0.58% 565ms 23.55% PCApply_ICC 558ms 23.26% 23.84% 560ms 23.34% MatSolve_SeqSBAIJ_1_NaturalOrdering 6ms 0.25% 24.09% 522ms 21.76% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 24.09% 508ms 21.18% KSP_PCApply.lto_priv.18 30ms 1.25% 25.34% 456ms 19.01% EulerIvpOdeSolver::CalculateNextYValue 139ms 5.79% 31.14% 418ms 17.42% CellLuoRudy1991FromCellML::EvaluateYDerivatives 130ms 5.42% 36.56% 335ms 13.96% __GI___exp 3ms 0.13% 36.68% 319ms 13.30% AbstractCardiacTissue::UpdateCaches (inline) 125ms 5.21% 41.89% 305ms 12.71% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.042% 41.93% 299ms 12.46% MatMult 0 0% 41.93% 293ms 12.21% KSP_PCApply (partial-inline) 1ms 0.042% 41.98% 292ms 12.17% MatMult_SeqAIJ 290ms 12.09% 54.06% 292ms 12.17% MatMult_SeqAIJ_Inode (inline) 0 0% 54.06% 288ms 12.01% KSPConvergedDefault 167ms 6.96% 61.03% 191ms 7.96% __ieee754_exp_fma 24ms 1.00% 62.03% 141ms 5.88% BidomainSolver::SetupLinearSystem 1ms 0.042% 62.07% 135ms 5.63% MatNullSpaceRemove 3ms 0.13% 62.19% 101ms 4.21% std::pow (inline) 10ms 0.42% 62.61% 98ms 4.09% __pow 0 0% 62.61% 93ms 3.88% VecMDot 5ms 0.21% 62.82% 93ms 3.88% VecMXDot_Private 6ms 0.25% 63.07% 88ms 3.67% __ieee754_pow_fma 14ms 0.58% 63.65% 81ms 3.38% MPI_Wtime 69ms 2.88% 66.53% 70ms 2.92% VecMDot_Seq 3ms 0.13% 66.65% 67ms 2.79% __GI___clock_gettime 64ms 2.67% 69.32% 64ms 2.67% [[vdso]] 15ms 0.63% 69.95% 62ms 2.58% PetscLogEventEndDefault 0 0% 69.95% 60ms 2.50% VecDuplicate 7ms 0.29% 70.24% 58ms 2.42% PetscLogEventBeginDefault 33ms 1.38% 71.61% 51ms 2.13% CellLuoRudy1991FromCellML::VerifyStateVariables 48ms 2.00% 73.61% 48ms 2.00% log_inline (inline) 42ms 1.75% 75.36% 42ms 1.75% ddot_ 2ms 0.083% 75.45% 41ms 1.71% VecMAXPY 0 0% 75.45% 34ms 1.42% CxxTest::RealWorldDescription::setUp 0 0% 75.45% 34ms 1.42% PMPI_Init_thread 0 0% 75.45% 34ms 1.42% PetscInitialize 0 0% 75.45% 34ms 1.42% PetscSetup::setUpWorld 0 0% 75.45% 34ms 1.42% PetscSetupUtils::CommonSetup 0 0% 75.45% 34ms 1.42% PetscSetupUtils::InitialisePetsc 2ms 0.083% 75.53% 34ms 1.42% VecAXPY 2ms 0.083% 75.61% 34ms 1.42% VecDuplicate_MPI 0 0% 75.61% 34ms 1.42% ompi_mpi_init 0 0% 75.61% 33ms 1.38% VecDot 29ms 1.21% 76.82% 33ms 1.38% exp_inline (inline) 4ms 0.17% 76.99% 32ms 1.33% VecCopy 0 0% 76.99% 29ms 1.21% 0 0% 76.99% 27ms 1.13% VecDot_Seq 0 0% 76.99% 27ms 1.13% VecXDot_Seq_Private.constprop.0 1ms 0.042% 77.03% 26ms 1.08% VecDuplicate_Seq 1ms 0.042% 77.07% 24ms 1.00% VecCreate 1ms 0.042% 77.12% 24ms 1.00% VecDestroy 0 0% 77.12% 24ms 1.00% VecNorm 16ms 0.67% 77.78% 24ms 1.00% top12 (inline) 0 0% 77.78% 23ms 0.96% orte_init 1ms 0.042% 77.82% 21ms 0.88% PetscMallocA 0 0% 77.82% 21ms 0.88% VecNorm_Seq 10ms 0.42% 78.24% 20ms 0.83% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 3ms 0.13% 78.37% 20ms 0.83% PetscMallocAlign 18ms 0.75% 79.12% 20ms 0.83% VecMAXPY_Seq 0 0% 79.12% 20ms 0.83% VecScale 20ms 0.83% 79.95% 20ms 0.83% [libchaste_heart.so] 3ms 0.13% 80.08% 19ms 0.79% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 80.08% 19ms 0.79% AbstractBidomainSolver::FinaliseLinearSystem 19ms 0.79% 80.87% 19ms 0.79% __memcpy_avx512_unaligned_erms 7ms 0.29% 81.16% 18ms 0.75% AbstractCardiacCell::SetVoltage (partial-inline) 3ms 0.13% 81.28% 18ms 0.75% VecCreate_MPI_Private 0 0% 81.28% 17ms 0.71% PetscMemcpy (inline) 1ms 0.042% 81.33% 17ms 0.71% VecAXPY_Seq 8ms 0.33% 81.66% 16ms 0.67% __GI___libc_malloc 0 0% 81.66% 16ms 0.67% hwloc_topology_load 2ms 0.083% 81.74% 15ms 0.63% hwloc_linux_get_tid_last_cpu_location 0 0% 81.74% 14ms 0.58% KSP_RemoveNullSpace (inline) 3ms 0.13% 81.87% 14ms 0.58% PetscOptionsFindPair 14ms 0.58% 82.45% 14ms 0.58% [libm.so.6] 14ms 0.58% 83.03% 14ms 0.58% asuint64 (inline) 14ms 0.58% 83.62% 14ms 0.58% daxpy_ 7ms 0.29% 83.91% 13ms 0.54% AbstractOneStepIvpOdeSolver::Solve 0 0% 83.91% 13ms 0.54% PetscHeaderCreate_Private 8ms 0.33% 84.24% 13ms 0.54% TimeStepper::TimeStepper 0 0% 84.24% 13ms 0.54% VecNorm_MPI 0 0% 84.24% 13ms 0.54% VecNorm_MPI_Default.constprop.0 0 0% 84.24% 13ms 0.54% VecStashCreate_Private 0 0% 84.24% 13ms 0.54% std::vector::_M_assign_aux (inline) 0 0% 84.24% 13ms 0.54% std::vector::assign (inline) 0 0% 84.24% 12ms 0.5% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.083% 84.33% 12ms 0.5% PMPI_Comm_get_attr 1ms 0.042% 84.37% 12ms 0.5% PetscHeaderDestroy_Private 0 0% 84.37% 12ms 0.5% __posix_memalign 0 0% 84.37% 12ms 0.5% mca_base_framework_open 0 0% 84.37% 12ms 0.5% mca_base_framework_register