File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109918ms, 91.77% of 119771ms total Dropped 1107 nodes (cum <= 598.86ms) flat flat% sum% cum cum% 0 0% 0% 119755ms 100% __libc_start_call_main 0 0% 0% 119755ms 100% __libc_start_main_impl 0 0% 0% 119755ms 100% _start 0 0% 0% 119753ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119753ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119753ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119753ms 100% main 0 0% 0% 119717ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119717ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119717ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119717ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119717ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 119716ms 100% AbstractConvergenceTester::Converge 6ms 0.005% 0.005% 118441ms 98.89% AbstractCardiacProblem::Solve 4ms 0.0033% 0.0083% 117669ms 98.24% AbstractDynamicLinearPdeSolver::Solve 6ms 0.005% 0.013% 66197ms 55.27% LinearSystem::Solve 1ms 0.00083% 0.014% 65682ms 54.84% KSPSolve 21ms 0.018% 0.032% 65681ms 54.84% KSPSolve_Private 13ms 0.011% 0.043% 65226ms 54.46% KSPSolve_SYMMLQ 223ms 0.19% 0.23% 42616ms 35.58% AbstractCardiacTissue::SolveCellSystems 5ms 0.0042% 0.23% 36655ms 30.60% PCApply 1ms 0.00083% 0.23% 36639ms 30.59% PCApply_BJacobi_Singleblock 1ms 0.00083% 0.23% 33975ms 28.37% KSPSolve_PREONLY (partial-inline) 3ms 0.0025% 0.24% 32815ms 27.40% PCApply_ICC 6ms 0.005% 0.24% 32812ms 27.40% MatSolve 32354ms 27.01% 27.26% 32806ms 27.39% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1435ms 1.20% 28.45% 32709ms 27.31% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00083% 28.45% 31792ms 26.54% KSP_PCApply.lto_priv.18 6911ms 5.77% 34.22% 28152ms 23.50% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 3ms 0.0025% 34.23% 22043ms 18.40% MatMult 286ms 0.24% 34.47% 22040ms 18.40% MatMult_SeqAIJ (partial-inline) 21520ms 17.97% 52.43% 22039ms 18.40% MatMult_SeqAIJ_Inode (inline) 1944ms 1.62% 54.06% 14513ms 12.12% CardiacNewtonSolver::Solve 314ms 0.26% 54.32% 9039ms 7.55% AbstractCardiacTissue::UpdateCaches (inline) 1860ms 1.55% 55.87% 8513ms 7.11% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4314ms 3.60% 59.47% 8471ms 7.07% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1208ms 1.01% 60.48% 7865ms 6.57% BidomainSolver::SetupLinearSystem 1198ms 1.00% 61.48% 7424ms 6.20% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00083% 61.48% 6961ms 5.81% KSP_PCApply (partial-inline) 13ms 0.011% 61.49% 6389ms 5.33% KSPConvergedDefault 5954ms 4.97% 66.47% 5954ms 4.97% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3848ms 3.21% 69.68% 3903ms 3.26% __ieee754_log_fma 0 0% 69.68% 3672ms 3.07% boost::numeric::ublas::norm_inf (inline) 2486ms 2.08% 71.75% 3672ms 3.07% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.75% 3672ms 3.07% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.75% 3672ms 3.07% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 10ms 0.0083% 71.76% 3477ms 2.90% MatNullSpaceRemove 3435ms 2.87% 74.63% 3435ms 2.87% __memcpy_avx_unaligned_erms 0 0% 74.63% 3403ms 2.84% PetscMemcpy (inline) 22ms 0.018% 74.65% 3172ms 2.65% std::pow (inline) 412ms 0.34% 74.99% 3142ms 2.62% __pow 32ms 0.027% 75.02% 3002ms 2.51% VecCopy 2ms 0.0017% 75.02% 2965ms 2.48% VecCopy_Seq (partial-inline) 1763ms 1.47% 76.49% 2942ms 2.46% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2915ms 2.43% 78.93% 2915ms 2.43% ddot_ 362ms 0.3% 79.23% 2719ms 2.27% __ieee754_pow_fma 10ms 0.0083% 79.24% 2581ms 2.15% VecAXPY 3ms 0.0025% 79.24% 2571ms 2.15% VecAXPY_Seq 2556ms 2.13% 81.37% 2556ms 2.13% daxpy_ 1ms 0.00083% 81.37% 2317ms 1.93% VecDot 2ms 0.0017% 81.38% 2316ms 1.93% VecDot_Seq 4ms 0.0033% 81.38% 2314ms 1.93% VecXDot_Seq_Private.constprop.0 3ms 0.0025% 81.38% 2085ms 1.74% AbstractFeVolumeIntegralAssembler::DoAssemble 4ms 0.0033% 81.39% 2004ms 1.67% VecMDot 6ms 0.005% 81.39% 2000ms 1.67% VecMXDot_Private 1980ms 1.65% 83.04% 1991ms 1.66% VecMDot_Seq 31ms 0.026% 83.07% 1722ms 1.44% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1596ms 1.33% 84.40% 1659ms 1.39% exp_inline (inline) 9ms 0.0075% 84.41% 1463ms 1.22% VecMAXPY 1449ms 1.21% 85.62% 1454ms 1.21% VecMAXPY_Seq 1450ms 1.21% 86.83% 1450ms 1.21% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.83% 1428ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1241ms 1.04% 87.87% 1241ms 1.04% __memset_avx2_unaligned_erms 0 0% 87.87% 1229ms 1.03% PetscMemzero (inline) 0 0% 87.87% 1123ms 0.94% CuboidMeshConstructor::Construct 0 0% 87.87% 1122ms 0.94% AbstractTetrahedralMesh::ConstructRegularSlabMesh 2ms 0.0017% 87.87% 1122ms 0.94% DistributedTetrahedralMesh::ConstructCuboid 5ms 0.0042% 87.87% 1096ms 0.92% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.87% 1093ms 0.91% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.87% 1093ms 0.91% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.87% 1093ms 0.91% boost_numeric_ublas_abs (inline) 1093ms 0.91% 88.78% 1093ms 0.91% std::abs (inline) 212ms 0.18% 88.96% 1086ms 0.91% boost::numeric::ublas::indexing_matrix_assign 788ms 0.66% 89.62% 1055ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 89.62% 1028ms 0.86% VecDuplicate 3ms 0.0025% 89.62% 1025ms 0.86% Element::Element 5ms 0.0042% 89.63% 1011ms 0.84% AbstractTetrahedralElement::CalculateJacobian 3ms 0.0025% 89.63% 969ms 0.81% AbstractTetrahedralElement::AbstractTetrahedralElement 13ms 0.011% 89.64% 873ms 0.73% PetscMallocA 6ms 0.005% 89.64% 868ms 0.72% BidomainAssembler::ComputeMatrixTerm 2ms 0.0017% 89.65% 864ms 0.72% VecNorm 5ms 0.0042% 89.65% 860ms 0.72% PetscMallocAlign (partial-inline) 1ms 0.00083% 89.65% 858ms 0.72% VecNorm_Seq 858ms 0.72% 90.37% 858ms 0.72% [libchaste_heart.so] 6ms 0.005% 90.37% 813ms 0.68% boost::numeric::ublas::c_matrix::c_matrix (inline) 2ms 0.0017% 90.37% 800ms 0.67% VecScale 4ms 0.0033% 90.38% 798ms 0.67% VecScale_Seq 792ms 0.66% 91.04% 792ms 0.66% dscal_ 1ms 0.00083% 91.04% 714ms 0.6% BidomainProblem::WriteOneStep 2ms 0.0017% 91.04% 688ms 0.57% AbstractBidomainSolver::FinaliseLinearSystem 217ms 0.18% 91.22% 684ms 0.57% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.22% 657ms 0.55% AbstractFeAssemblerInterface::Assemble (inline) 655ms 0.55% 91.77% 655ms 0.55% log_inline (inline) 5ms 0.0042% 91.77% 633ms 0.53% VecDuplicate_Seq