File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 331ms, 89.70% of 369ms total Dropped 173 nodes (cum <= 1.84ms) flat flat% sum% cum cum% 0 0% 0% 361ms 97.83% __libc_start_call_main 0 0% 0% 361ms 97.83% __libc_start_main_impl 0 0% 0% 361ms 97.83% _start 0 0% 0% 358ms 97.02% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 358ms 97.02% CxxTest::TestRunner::runAllTests 0 0% 0% 358ms 97.02% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 358ms 97.02% main 0 0% 0% 325ms 88.08% CxxTest::RealTestDescription::run 0 0% 0% 325ms 88.08% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 325ms 88.08% CxxTest::TestRunner::runTest (inline) 0 0% 0% 325ms 88.08% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 325ms 88.08% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 321ms 86.99% AbstractCardiacProblem::Solve 0 0% 0% 321ms 86.99% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 274ms 74.25% LinearSystem::Solve 0 0% 0% 273ms 73.98% KSPSolve 1ms 0.27% 0.27% 273ms 73.98% KSPSolve_Private 0 0% 0.27% 272ms 73.71% KSPSolve_CG 0 0% 0.27% 188ms 50.95% KSP_PCApply.lto_priv.7 0 0% 0.27% 181ms 49.05% PCApply 0 0% 0.27% 179ms 48.51% PCApply_BJacobi_Singleblock 0 0% 0.27% 152ms 41.19% KSPSolve_PREONLY (partial-inline) 0 0% 0.27% 143ms 38.75% MatSolve 141ms 38.21% 38.48% 143ms 38.75% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 38.48% 143ms 38.75% PCApply_ICC 0 0% 38.48% 40ms 10.84% MatMult 1ms 0.27% 38.75% 40ms 10.84% MatMult_SeqAIJ (partial-inline) 39ms 10.57% 49.32% 40ms 10.84% MatMult_SeqAIJ_Inode (inline) 2ms 0.54% 49.86% 38ms 10.30% AbstractCardiacTissue::SolveCellSystems 0 0% 49.86% 29ms 7.86% CxxTest::RealWorldDescription::setUp 0 0% 49.86% 29ms 7.86% PMPI_Init_thread 0 0% 49.86% 29ms 7.86% PetscInitialize 0 0% 49.86% 29ms 7.86% PetscSetup::setUpWorld 0 0% 49.86% 29ms 7.86% PetscSetupUtils::CommonSetup 0 0% 49.86% 29ms 7.86% PetscSetupUtils::InitialisePetsc 0 0% 49.86% 29ms 7.86% ompi_mpi_init 27ms 7.32% 57.18% 27ms 7.32% ddot_ 0 0% 57.18% 25ms 6.78% 0 0% 57.18% 23ms 6.23% MatNullSpaceRemove 0 0% 57.18% 22ms 5.96% AbstractCardiacCell::ComputeExceptVoltage 0 0% 57.18% 21ms 5.69% AbstractOneStepIvpOdeSolver::InternalSolve 5ms 1.36% 58.54% 19ms 5.15% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 58.54% 19ms 5.15% EulerIvpOdeSolver::CalculateNextYValue 0 0% 58.54% 19ms 5.15% orte_init 5ms 1.36% 59.89% 16ms 4.34% __GI___exp 1ms 0.27% 60.16% 14ms 3.79% VecNorm 0 0% 60.16% 14ms 3.79% VecTDot 0 0% 60.16% 14ms 3.79% VecTDot_Seq 0 0% 60.16% 14ms 3.79% VecXDot_Seq_Private.constprop.0 0 0% 60.16% 13ms 3.52% VecDuplicate 0 0% 60.16% 13ms 3.52% VecMDot 13ms 3.52% 63.69% 13ms 3.52% VecMDot_Seq 0 0% 63.69% 13ms 3.52% VecMXDot_Private 0 0% 63.69% 13ms 3.52% VecNorm_Seq 0 0% 63.69% 13ms 3.52% __GI__dl_catch_exception 0 0% 63.69% 13ms 3.52% _dl_catch_error 0 0% 63.69% 13ms 3.52% _dlerror_run 0 0% 63.69% 13ms 3.52% hwloc_topology_load 0 0% 63.69% 13ms 3.52% mca_base_framework_open 0 0% 63.69% 12ms 3.25% ___dlopen 0 0% 63.69% 12ms 3.25% _dl_open 0 0% 63.69% 12ms 3.25% dl_open_worker 0 0% 63.69% 12ms 3.25% dlopen_doit 0 0% 63.69% 12ms 3.25% dlopen_implementation (inline) 0 0% 63.69% 12ms 3.25% hwloc_linux_get_tid_last_cpu_location 0 0% 63.69% 12ms 3.25% opal_stackframe_output 0 0% 63.69% 11ms 2.98% VecDuplicate_Seq 0 0% 63.69% 11ms 2.98% _dl_init 0 0% 63.69% 11ms 2.98% call_init (inline) 0 0% 63.69% 11ms 2.98% mca_base_component_find 0 0% 63.69% 11ms 2.98% mca_base_component_repository_open 0 0% 63.69% 11ms 2.98% mca_base_framework_components_register 0 0% 63.69% 11ms 2.98% mca_base_framework_register 1ms 0.27% 63.96% 10ms 2.71% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 63.96% 10ms 2.71% VecMAXPY 10ms 2.71% 66.67% 10ms 2.71% VecMAXPY_Seq 10ms 2.71% 69.38% 10ms 2.71% __ieee754_exp_fma 2ms 0.54% 69.92% 9ms 2.44% CellLuoRudy1991FromCellML::GetIIonic 0 0% 69.92% 9ms 2.44% VecAYPX 9ms 2.44% 72.36% 9ms 2.44% VecAYPX_Seq 0 0% 72.36% 8ms 2.17% KSP_PCApply (inline) 0 0% 72.36% 8ms 2.17% dl_open_worker_begin 0 0% 72.36% 7ms 1.90% VecAXPY 0 0% 72.36% 7ms 1.90% VecAXPY_Seq 0 0% 72.36% 7ms 1.90% VecSetType 0 0% 72.36% 7ms 1.90% _dl_start_user 7ms 1.90% 74.25% 7ms 1.90% daxpy_ 6ms 1.63% 75.88% 6ms 1.63% __GI___libc_read 1ms 0.27% 76.15% 6ms 1.63% boost::serialization::singleton::get_instance 0 0% 76.15% 6ms 1.63% mca_base_framework_components_open 0 0% 76.15% 6ms 1.63% opal_hwloc_base_get_topology 0 0% 76.15% 6ms 1.63% orte_ess_base_proc_binding 0 0% 76.15% 5ms 1.36% PetscMallocA 0 0% 76.15% 5ms 1.36% PetscMallocAlign (partial-inline) 0 0% 76.15% 5ms 1.36% VecCreate 0 0% 76.15% 5ms 1.36% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 1ms 0.27% 76.42% 5ms 1.36% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 76.42% 5ms 1.36% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 0 0% 76.42% 5ms 1.36% mca_topo_base_dist_graph_neighbors_count 1ms 0.27% 76.69% 4ms 1.08% BidomainSolver::SetupLinearSystem 0 0% 76.69% 4ms 1.08% CxxTest::RealWorldDescription::tearDown 0 0% 76.69% 4ms 1.08% PetscFinalize 0 0% 76.69% 4ms 1.08% PetscMemcpy (inline) 0 0% 76.69% 4ms 1.08% PetscSetup::tearDownWorld 0 0% 76.69% 4ms 1.08% PetscSetupUtils::CommonFinalize 0 0% 76.69% 4ms 1.08% VecCreate_Seq 4ms 1.08% 77.78% 4ms 1.08% __memcpy_avx512_unaligned_erms 4ms 1.08% 78.86% 4ms 1.08% __memset_avx512_unaligned_erms 4ms 1.08% 79.95% 4ms 1.08% __strcmp_evex 3ms 0.81% 80.76% 4ms 1.08% _int_malloc 1ms 0.27% 81.03% 4ms 1.08% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 1ms 0.27% 81.30% 3ms 0.81% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 81.30% 3ms 0.81% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 81.30% 3ms 0.81% AbstractCardiacProblem::Initialise 2ms 0.54% 81.84% 3ms 0.81% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 81.84% 3ms 0.81% PMPI_Comm_get_attr 0 0% 81.84% 3ms 0.81% PetscHeaderCreate_Private 0 0% 81.84% 3ms 0.81% PetscHeaderDestroy_Private 0 0% 81.84% 3ms 0.81% PetscMemzero (inline) 0 0% 81.84% 3ms 0.81% VecDestroy 3ms 0.81% 82.66% 3ms 0.81% __GI___clock_nanosleep 2ms 0.54% 83.20% 3ms 0.81% __GI___libc_free 0 0% 83.20% 3ms 0.81% __GI___libc_malloc 0 0% 83.20% 3ms 0.81% __GI___nanosleep 0 0% 83.20% 3ms 0.81% __GI_exit 0 0% 83.20% 3ms 0.81% ___pthread_mutex_lock 0 0% 83.20% 3ms 0.81% __cxa_finalize 0 0% 83.20% 3ms 0.81% __ieee754_pow_fma 0 0% 83.20% 3ms 0.81% __pow 0 0% 83.20% 3ms 0.81% __run_exit_handlers 0 0% 83.20% 3ms 0.81% _dl_call_fini 0 0% 83.20% 3ms 0.81% _dl_fini 0 0% 83.20% 3ms 0.81% _dl_lookup_symbol_x 0 0% 83.20% 3ms 0.81% _dl_map_object 0 0% 83.20% 3ms 0.81% _dl_open_relocate_one_object (inline) 0 0% 83.20% 3ms 0.81% _dl_relocate_object 1ms 0.27% 83.47% 3ms 0.81% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 2ms 0.54% 84.01% 3ms 0.81% do_lookup_x 0 0% 84.01% 3ms 0.81% elf_dynamic_do_Rela (inline) 0 0% 84.01% 3ms 0.81% elf_machine_rela (inline) 1ms 0.27% 84.28% 3ms 0.81% kh_get_HMapFunc (inline) 3ms 0.81% 85.09% 3ms 0.81% lll_mutex_lock_optimized (inline) 0 0% 85.09% 3ms 0.81% ompi_attr_get_c 0 0% 85.09% 3ms 0.81% ompi_mpi_finalize 0 0% 85.09% 3ms 0.81% resolve_map (inline) 0 0% 85.09% 3ms 0.81% std::pow (inline) 3ms 0.81% 85.91% 3ms 0.81% strcmp 0 0% 85.91% 3ms 0.81% usleep 0 0% 85.91% 2ms 0.54% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 85.91% 2ms 0.54% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 85.91% 2ms 0.54% DistributedTetrahedralMesh::ConstructFromMeshReader 2ms 0.54% 86.45% 2ms 0.54% MatGetLocalSize 0 0% 86.45% 2ms 0.54% PetscCommDuplicate 0 0% 86.45% 2ms 0.54% PetscFunctionListFind_Private 0 0% 86.45% 2ms 0.54% PetscHMapFuncGet (inline) 0 0% 86.45% 2ms 0.54% VecCopy 0 0% 86.45% 2ms 0.54% VecCopy_Seq (partial-inline) 1ms 0.27% 86.72% 2ms 0.54% VecCreate_Seq_Private 0 0% 86.72% 2ms 0.54% VecDuplicate_MPI 0 0% 86.72% 2ms 0.54% XOpenDisplay 0 0% 86.72% 2ms 0.54% [hwloc_gl.so] 2ms 0.54% 87.26% 2ms 0.54% [libchaste_heart.so] 0 0% 87.26% 2ms 0.54% [libxcb.so.1.1.0] 0 0% 87.26% 2ms 0.54% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 87.26% 2ms 0.54% _XConnectXCB 2ms 0.54% 87.80% 2ms 0.54% __libc_connect 2ms 0.54% 88.35% 2ms 0.54% __libc_openat64 0 0% 88.35% 2ms 0.54% __posix_memalign 2ms 0.54% 88.89% 2ms 0.54% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.89% 2ms 0.54% boost::numeric::ublas::matrix_assign (inline) 2ms 0.54% 89.43% 2ms 0.54% exp_inline (inline) 1ms 0.27% 89.70% 2ms 0.54% malloc_consolidate 0 0% 89.70% 2ms 0.54% mca_base_component_repository_release 0 0% 89.70% 2ms 0.54% xcb_connect_to_display_with_auth_info