Flat profile: Each sample counts as 0.01 seconds. % cumulative self self total time seconds seconds calls s/call s/call name 33.95 4.23 4.23 22419 0.00 0.00 boost::numeric::ublas::c_vector::operator()(unsigned long) const 21.67 6.93 2.70 3 0.90 0.90 boost::numeric::ublas::c_vector::operator()(unsigned long) 16.37 8.97 2.04 7473 0.00 0.00 unsigned long boost::numeric::ublas::same_impl_ex(unsigned long const&, unsigned long const&, char const*, int) 10.83 10.32 1.35 _init 6.18 11.09 0.77 57559825 0.00 0.00 boost::detail::shared_count::shared_count(boost::detail::shared_count const&) 4.33 11.63 0.54 40388425 0.00 0.00 boost::detail::sp_counted_base::release() 1.93 11.87 0.24 18718364 0.00 0.00 AbstractCellPopulation<3u, 3u>::Iterator::IsRealCell() 1.36 12.04 0.17 1733 0.00 0.00 boost::shared_ptr::operator->() const 0.80 12.14 0.10 18723548 0.00 0.00 boost::shared_ptr::operator->() const 0.56 12.21 0.07 18718364 0.00 0.00 AbstractCellPopulation<3u, 3u>::Iterator::operator->() 0.56 12.28 0.07 15115 0.00 0.00 AbstractCellPopulation<3u, 3u>::Iterator::Iterator(AbstractCellPopulation<3u, 3u>&, std::_List_iterator >) 0.56 12.35 0.07 100 0.00 0.02 AbstractCellPopulation<3u, 3u>::Iterator::operator++() 0.40 12.40 0.05 57548381 0.00 0.00 AbstractCellPopulation<3u, 3u>::Iterator::IsAtEnd() 0.16 12.42 0.02 1728 0.00 0.00 std::_Rb_tree, boost::shared_ptr, std::_Identity >, std::less >, std::allocator > >::_M_erase(std::_Rb_tree_node >*) 0.16 12.44 0.02 1 0.02 0.26 AbstractCellPopulation<3u, 3u>::Iterator::operator*() 0.08 12.45 0.01 2934847 0.00 0.00 std::_Rb_tree, boost::shared_ptr, std::_Identity >, std::less >, std::allocator > >::_M_drop_node(std::_Rb_tree_node >*) 0.08 12.46 0.01 1728 0.00 0.00 bool AbstractCellProperty::IsType() const 0.00 12.46 0.00 21151 0.00 0.00 void std::__cxx11::basic_string, std::allocator >::_M_construct(char const*, char const*, std::forward_iterator_tag) 0.00 12.46 0.00 14946 0.00 0.00 boost::numeric::ublas::unbounded_array >::operator[](unsigned long) 0.00 12.46 0.00 14946 0.00 0.00 boost::numeric::ublas::unbounded_array >::operator[](unsigned long) const 0.00 12.46 0.00 14879 0.00 0.00 boost::detail::sp_counted_base::weak_release() 0.00 12.46 0.00 14879 0.00 0.00 boost::detail::sp_counted_base::destroy() 0.00 12.46 0.00 7473 0.00 0.00 boost::numeric::ublas::vector_binary, boost::numeric::ublas::vector > >, boost::numeric::ublas::scalar_minus >::operator()(unsigned long) const 0.00 12.46 0.00 7428 0.00 0.00 boost::detail::weak_count::use_count() const 0.00 12.46 0.00 4982 0.00 0.00 boost::mpl::if_c::value, double, double>::type (anonymous namespace)::boost_numeric_ublas_sqrt(double const&) 0.00 12.46 0.00 2491 0.00 0.00 boost::numeric::ublas::unbounded_array >::unbounded_array(unsigned long, std::allocator const&) 0.00 12.46 0.00 2491 0.00 0.00 boost::numeric::ublas::unbounded_array >::~unbounded_array() 0.00 12.46 0.00 2491 0.00 0.00 double boost::numeric::ublas::vector_norm_inf, boost::numeric::ublas::vector > >, boost::numeric::ublas::scalar_minus > >::apply, boost::numeric::ublas::vector > >, boost::numeric::ublas::scalar_minus > >(boost::numeric::ublas::vector_expression, boost::numeric::ublas::vector > >, boost::numeric::ublas::scalar_minus > > const&) 0.00 12.46 0.00 2491 0.00 0.00 double boost::numeric::ublas::vector_norm_inf > > >::apply > > const> >(boost::numeric::ublas::vector_expression > > const> > const&) 0.00 12.46 0.00 2491 0.00 0.00 double boost::numeric::ublas::vector_norm_inf >::apply const> >(boost::numeric::ublas::vector_expression const> > const&) 0.00 12.46 0.00 2491 0.00 0.00 void boost::numeric::ublas::indexing_vector_assign > >, boost::numeric::ublas::c_vector >(boost::numeric::ublas::vector > >&, boost::numeric::ublas::vector_expression > const&) 0.00 12.46 0.00 2491 0.00 0.00 bool boost::numeric::ublas::detail::expression_type_check, boost::numeric::ublas::vector > > >(boost::numeric::ublas::vector_expression > const&, boost::numeric::ublas::vector_expression > > > const&) 0.00 12.46 0.00 2491 0.00 0.00 bool boost::numeric::ublas::detail::equals, boost::numeric::ublas::vector > >, double>(boost::numeric::ublas::vector_expression > const&, boost::numeric::ublas::vector_expression > > > const&, double, double) 0.00 12.46 0.00 2491 0.00 0.00 boost::numeric::ublas::vector_scalar_unary_traits, boost::numeric::ublas::vector > >, boost::numeric::ublas::scalar_minus >, boost::numeric::ublas::vector_norm_inf, boost::numeric::ublas::vector > >, boost::numeric::ublas::scalar_minus > > >::result_type boost::numeric::ublas::norm_inf, boost::numeric::ublas::vector > >, boost::numeric::ublas::scalar_minus > >(boost::numeric::ublas::vector_expression, boost::numeric::ublas::vector > >, boost::numeric::ublas::scalar_minus > > const&) 0.00 12.46 0.00 2491 0.00 0.00 boost::numeric::ublas::vector_scalar_unary_traits > >, boost::numeric::ublas::vector_norm_inf > > > >::result_type boost::numeric::ublas::norm_inf > > >(boost::numeric::ublas::vector_expression > > > const&) 0.00 12.46 0.00 2491 0.00 0.00 boost::numeric::ublas::vector_scalar_unary_traits, boost::numeric::ublas::vector_norm_inf > >::result_type boost::numeric::ublas::norm_inf >(boost::numeric::ublas::vector_expression > const&) 0.00 12.46 0.00 2491 0.00 0.00 boost::numeric::ublas::vector_binary_traits, boost::numeric::ublas::vector > >, boost::numeric::ublas::scalar_minus::value_type, boost::numeric::ublas::vector > >::value_type> >::result_type boost::numeric::ublas::operator-, boost::numeric::ublas::vector > > >(boost::numeric::ublas::vector_expression > const&, boost::numeric::ublas::vector_expression > > > const&) 0.00 12.46 0.00 2491 0.00 0.00 boost::numeric::ublas::vector_binary, boost::numeric::ublas::vector > >, boost::numeric::ublas::scalar_minus >::size() const 0.00 12.46 0.00 2491 0.00 0.00 std::__new_allocator::allocate(unsigned long, void const*) 0.00 12.46 0.00 2482 0.00 0.00 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::zero_vector > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression > > const&) 0.00 12.46 0.00 2482 0.00 0.00 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::zero_vector > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression > > const&, boost::numeric::ublas::sparse_tag) 0.00 12.46 0.00 2482 0.00 0.00 void boost::numeric::ublas::indexing_vector_assign > >, boost::numeric::ublas::zero_vector > >(boost::numeric::ublas::vector > >&, boost::numeric::ublas::vector_expression > > const&) 0.00 12.46 0.00 2482 0.00 0.00 boost::numeric::ublas::zero_vector >::const_iterator::operator==(boost::numeric::ublas::zero_vector >::const_iterator const&) const 0.00 12.46 0.00 2476 0.00 0.00 boost::detail::weak_count::operator=(boost::detail::shared_count const&) 0.00 12.46 0.00 2476 0.00 0.00 boost::detail::shared_count::shared_count(Cell*) 0.00 12.46 0.00 2476 0.00 0.00 boost::detail::sp_counted_impl_p::dispose() 0.00 12.46 0.00 2476 0.00 0.00 boost::detail::sp_counted_impl_p::~sp_counted_impl_p() 0.00 12.46 0.00 2476 0.00 0.00 void boost::detail::sp_pointer_construct(boost::shared_ptr*, Cell*, boost::detail::shared_count&) 0.00 12.46 0.00 2476 0.00 0.00 void boost::enable_shared_from_this::_internal_accept_owner(boost::shared_ptr const*, Cell*) const 0.00 12.46 0.00 1728 0.00 0.00 boost::shared_ptr CellPropertyRegistry::Get() 0.00 12.46 0.00 1728 0.00 0.00 boost::shared_ptr::operator=(boost::shared_ptr const&) 0.00 12.46 0.00 1728 0.00 0.00 boost::shared_ptr::shared_ptr(Cell*) 0.00 12.46 0.00 1728 0.00 0.00 bool AbstractCellProperty::IsType() const 0.00 12.46 0.00 1728 0.00 0.00 boost::shared_ptr::operator->() const 0.00 12.46 0.00 1728 0.00 0.00 std::vector, std::allocator > >::push_back(boost::shared_ptr const&) 0.00 12.46 0.00 1728 0.00 0.00 Node<3u>*& std::vector*, std::allocator*> >::emplace_back*>(Node<3u>*&&) 0.00 12.46 0.00 1728 0.00 0.00 std::vector*, std::allocator*> >::back() 0.00 12.46 0.00 18 0.00 0.00 boost::numeric::ublas::unit_vector >::const_iterator::operator==(boost::numeric::ublas::unit_vector >::const_iterator const&) const 0.00 12.46 0.00 14 0.00 0.00 CxxTest::ErrorPrinter::Adapter::operator<<(char const*) 0.00 12.46 0.00 12 0.00 0.00 CxxTest::TestTracker::tracker() 0.00 12.46 0.00 12 0.00 0.00 CxxTest::Link::active() const 0.00 12.46 0.00 12 0.00 0.00 std::vector*, std::allocator*> >::_M_check_len(unsigned long, char const*) const 0.00 12.46 0.00 12 0.00 0.00 std::__new_allocator*>::allocate(unsigned long, void const*) 0.00 12.46 0.00 12 0.00 0.00 std::vector*, std::allocator*> >::_Guard_alloc::~_Guard_alloc() 0.00 12.46 0.00 12 0.00 0.00 void std::vector*, std::allocator*> >::_M_realloc_append*>(Node<3u>*&&) 0.00 12.46 0.00 9 0.00 0.00 boost::numeric::ublas::unit_vector >::const_iterator::operator++() 0.00 12.46 0.00 9 0.00 0.00 boost::numeric::ublas::c_vector::insert_element(unsigned long, double const&) 0.00 12.46 0.00 9 0.00 0.00 boost::numeric::ublas::unit_vector >::const_iterator::index() const 0.00 12.46 0.00 9 0.00 0.00 boost::numeric::ublas::unit_vector >::const_iterator::operator*() const 0.00 12.46 0.00 9 0.00 0.00 CxxTest::TestTracker::dummyWorld() const 0.00 12.46 0.00 8 0.00 0.00 CxxTest::TestTracker::dummySuite() const 0.00 12.46 0.00 8 0.00 0.00 CxxTest::DummyWorldDescription::suiteDescription(unsigned int) const 0.00 12.46 0.00 7 0.00 0.00 CxxTest::Link::Link() 0.00 12.46 0.00 7 0.00 0.00 CxxTest::Link::~Link() 0.00 12.46 0.00 6 0.00 0.00 CxxTest::TestTracker::setTest(CxxTest::TestDescription const*) 0.00 12.46 0.00 6 0.00 0.00 CxxTest::ErrorPrinter::Adapter::flush() 0.00 12.46 0.00 6 0.00 0.00 CxxTest::List::head() 0.00 12.46 0.00 6 0.00 0.00 boost::numeric::ublas::vector_unary >, boost::numeric::ublas::scalar_negate >::const_iterator::operator==(boost::numeric::ublas::vector_unary >, boost::numeric::ublas::scalar_negate >::const_iterator const&) const 0.00 12.46 0.00 6 0.00 0.00 boost::numeric::ublas::vector_binary_scalar1 >, boost::numeric::ublas::scalar_multiplies >::const_iterator::operator==(boost::numeric::ublas::vector_binary_scalar1 >, boost::numeric::ublas::scalar_multiplies >::const_iterator const&) const 0.00 12.46 0.00 6 0.00 0.00 CxxTest::TestTracker::fixTest(CxxTest::TestDescription const*) const 0.00 12.46 0.00 5 0.00 0.00 boost::shared_ptr >::shared_ptr >(PlaneBoundaryCondition<3u, 3u>*) 0.00 12.46 0.00 5 0.00 0.00 boost::detail::shared_count::shared_count >(PlaneBoundaryCondition<3u, 3u>*) 0.00 12.46 0.00 5 0.00 0.00 boost::detail::sp_counted_impl_p >::dispose() 0.00 12.46 0.00 5 0.00 0.00 boost::detail::sp_counted_impl_p >::~sp_counted_impl_p() 0.00 12.46 0.00 5 0.00 0.00 void boost::detail::sp_pointer_construct, PlaneBoundaryCondition<3u, 3u> >(boost::shared_ptr >*, PlaneBoundaryCondition<3u, 3u>*, boost::detail::shared_count&) 0.00 12.46 0.00 5 0.00 0.00 CxxTest::ErrorPrinter::Adapter::operator<<(void (*)(CxxTest::OutputStream&)) 0.00 12.46 0.00 5 0.00 0.00 bool AbstractCellProperty::IsType() const 0.00 12.46 0.00 5 0.00 0.00 CxxTest::TestTracker::dummyTest() const 0.00 12.46 0.00 5 0.00 0.00 CxxTest::DummySuiteDescription::testDescription(unsigned int) const 0.00 12.46 0.00 5 0.00 0.00 std::_Vector_base, std::allocator > >::~_Vector_base() 0.00 12.46 0.00 5 0.00 0.00 void std::_Destroy*>(boost::shared_ptr*, boost::shared_ptr*) 0.00 12.46 0.00 4 0.00 0.00 CxxTest::TestTracker::setSuite(CxxTest::SuiteDescription const*) 0.00 12.46 0.00 4 0.00 0.00 CxxTest::OutputStream::endl(CxxTest::OutputStream&) 0.00 12.46 0.00 4 0.00 0.00 CxxTest::ErrorFormatter::endl(CxxTest::OutputStream&) 0.00 12.46 0.00 4 0.00 0.00 CxxTest::setMaxDumpSize(unsigned int) 0.00 12.46 0.00 4 0.00 0.00 CxxTest::Link::next() 0.00 12.46 0.00 4 0.00 0.00 CxxTest::TestTracker::fixSuite(CxxTest::SuiteDescription const*) const 0.00 12.46 0.00 4 0.00 0.00 CxxTest::RealTestDescription::suite() const 0.00 12.46 0.00 4 0.00 0.00 CxxTest::StaticSuiteDescription::suite() const 0.00 12.46 0.00 4 0.00 0.00 CxxTest::Link::next() const 0.00 12.46 0.00 4 0.00 0.00 std::vector, std::allocator > >::_M_check_len(unsigned long, char const*) const 0.00 12.46 0.00 4 0.00 0.00 std::__new_allocator >::allocate(unsigned long, void const*) 0.00 12.46 0.00 4 0.00 0.00 std::vector, std::allocator > >::_Guard_alloc::~_Guard_alloc() 0.00 12.46 0.00 4 0.00 0.00 void std::vector, std::allocator > >::_M_realloc_append const&>(boost::shared_ptr const&) 0.00 12.46 0.00 3 0.00 0.00 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::unit_vector > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression > > const&) 0.00 12.46 0.00 3 0.00 0.00 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::unit_vector > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression > > const&, boost::numeric::ublas::sparse_tag) 0.00 12.46 0.00 3 0.00 0.00 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::vector_unary >, boost::numeric::ublas::scalar_negate > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression >, boost::numeric::ublas::scalar_negate > > const&) 0.00 12.46 0.00 3 0.00 0.00 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::vector_unary >, boost::numeric::ublas::scalar_negate > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression >, boost::numeric::ublas::scalar_negate > > const&, boost::numeric::ublas::sparse_tag) 0.00 12.46 0.00 3 0.00 0.00 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::vector_binary_scalar1 >, boost::numeric::ublas::scalar_multiplies > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression >, boost::numeric::ublas::scalar_multiplies > > const&) 0.00 12.46 0.00 3 0.00 0.00 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::vector_binary_scalar1 >, boost::numeric::ublas::scalar_multiplies > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression >, boost::numeric::ublas::scalar_multiplies > > const&, boost::numeric::ublas::sparse_tag) 0.00 12.46 0.00 3 0.00 0.00 void boost::numeric::ublas::indexing_vector_assign > >, boost::numeric::ublas::unit_vector > >(boost::numeric::ublas::vector > >&, boost::numeric::ublas::vector_expression > > const&) 0.00 12.46 0.00 3 0.00 0.00 void boost::numeric::ublas::indexing_vector_assign > >, boost::numeric::ublas::vector_unary >, boost::numeric::ublas::scalar_negate > >(boost::numeric::ublas::vector > >&, boost::numeric::ublas::vector_expression >, boost::numeric::ublas::scalar_negate > > const&) 0.00 12.46 0.00 3 0.00 0.00 void boost::numeric::ublas::indexing_vector_assign > >, boost::numeric::ublas::vector_binary_scalar1 >, boost::numeric::ublas::scalar_multiplies > >(boost::numeric::ublas::vector > >&, boost::numeric::ublas::vector_expression >, boost::numeric::ublas::scalar_multiplies > > const&) 0.00 12.46 0.00 3 0.00 0.00 boost::numeric::ublas::c_vector::c_vector > >(boost::numeric::ublas::vector_expression > > const&) 0.00 12.46 0.00 3 0.00 2.08 boost::numeric::ublas::c_vector::c_vector > >(boost::numeric::ublas::vector_expression > > const&) 0.00 12.46 0.00 3 0.00 0.00 boost::numeric::ublas::c_vector::c_vector >, boost::numeric::ublas::scalar_negate > >(boost::numeric::ublas::vector_expression >, boost::numeric::ublas::scalar_negate > > const&) 0.00 12.46 0.00 3 0.00 0.00 boost::numeric::ublas::c_vector::c_vector >, boost::numeric::ublas::scalar_multiplies > >(boost::numeric::ublas::vector_expression >, boost::numeric::ublas::scalar_multiplies > > const&) 0.00 12.46 0.00 3 0.00 0.00 boost::enable_if >::value_type>, boost::numeric::ublas::vector_binary_scalar1_traits >, boost::numeric::ublas::scalar_multiplies >::value_type> >::result_type>::type boost::numeric::ublas::operator* > >(double const&, boost::numeric::ublas::vector_expression > > const&) 0.00 12.46 0.00 3 0.00 0.00 boost::numeric::ublas::vector_unary_traits >, boost::numeric::ublas::scalar_negate >::value_type> >::result_type boost::numeric::ublas::operator- > >(boost::numeric::ublas::vector_expression > > const&) 0.00 12.46 0.00 3 0.00 0.00 CxxTest::TestTracker::setListener(CxxTest::TestListener*) 0.00 12.46 0.00 3 0.00 0.00 CxxTest::maxDumpSize() 0.00 12.46 0.00 3 0.00 0.00 void CxxTest::doAssertDelta(char const*, unsigned int, char const*, double, char const*, double, char const*, double, char const*) 0.00 12.46 0.00 3 0.00 0.00 CxxTest::RealWorldDescription::suites() 0.00 12.46 0.00 3 0.00 0.00 CxxTest::Link::attach(CxxTest::List&) 0.00 12.46 0.00 3 0.00 0.00 bool CxxTest::delta(double, double, double) 0.00 12.46 0.00 3 0.00 0.00 boost::numeric::ublas::vector_binary_scalar1 >, boost::numeric::ublas::scalar_multiplies >::end() const 0.00 12.46 0.00 2 0.00 0.00 TransitCellProliferativeType::~TransitCellProliferativeType() 0.00 12.46 0.00 2 0.00 0.00 boost::detail::sp_counted_impl_p::dispose() 0.00 12.46 0.00 2 0.00 0.00 boost::detail::sp_counted_impl_p::~sp_counted_impl_p() 0.00 12.46 0.00 2 0.00 0.00 CxxTest::TestTracker::setWorld(CxxTest::WorldDescription const*) 0.00 12.46 0.00 2 0.00 0.00 CxxTest::GlobalFixture::lastGlobalFixture() 0.00 12.46 0.00 2 0.00 0.00 CxxTest::GlobalFixture::nextGlobalFixture() 0.00 12.46 0.00 2 0.00 0.00 CxxTest::GlobalFixture::prevGlobalFixture() 0.00 12.46 0.00 2 0.00 0.00 CxxTest::GlobalFixture::firstGlobalFixture() 0.00 12.46 0.00 2 0.00 0.00 CxxTest::TestDescription::~TestDescription() 0.00 12.46 0.00 2 0.00 0.00 CxxTest::SuiteDescription::~SuiteDescription() 0.00 12.46 0.00 2 0.00 0.00 CxxTest::WorldDescription::~WorldDescription() 0.00 12.46 0.00 2 0.00 0.00 CxxTest::Link::prev() 0.00 12.46 0.00 2 0.00 0.00 CxxTest::List::tail() 0.00 12.46 0.00 2 0.00 0.00 CxxTest::TestTracker::fixWorld(CxxTest::WorldDescription const*) const 0.00 12.46 0.00 2 0.00 0.00 CxxTest::RealSuiteDescription::next() const 0.00 12.46 0.00 2 0.00 0.00 CxxTest::RealSuiteDescription::numTests() const 0.00 12.46 0.00 2 0.00 0.00 CxxTest::RealWorldDescription::firstSuite() const 0.00 12.46 0.00 2 0.00 0.00 CxxTest::RealWorldDescription::numTotalTests() const 0.00 12.46 0.00 2 0.00 0.00 CxxTest::List::head() const 0.00 12.46 0.00 2 0.00 0.00 CxxTest::List::size() const 0.00 12.46 0.00 2 0.00 0.00 std::vector, std::allocator > >::push_back(boost::shared_ptr const&) 0.00 12.46 0.00 2 0.00 0.00 std::__cxx11::basic_string, std::allocator >::basic_string >(char const*, std::allocator const&) 0.00 12.46 0.00 1 0.00 0.00 __static_initialization_and_destruction_0() 0.00 12.46 0.00 1 0.00 0.00 PetscSetup::setUpWorld() 0.00 12.46 0.00 1 0.00 0.00 PetscSetup::tearDownWorld() 0.00 12.46 0.00 1 0.00 0.25 CellsGenerator::GenerateBasicRandom(std::vector, std::allocator > >&, unsigned int, boost::shared_ptr) 0.00 12.46 0.00 1 0.00 0.00 OffLatticeSimulation<3u, 3u>::~OffLatticeSimulation() 0.00 12.46 0.00 1 0.00 0.07 AbstractCellPopulation<3u, 3u>::Begin() 0.00 12.46 0.00 1 0.00 0.00 StemCellProliferativeType::~StemCellProliferativeType() 0.00 12.46 0.00 1 0.00 0.00 WildTypeCellMutationState::~WildTypeCellMutationState() 0.00 12.46 0.00 1 0.00 0.00 AbstractCellBasedTestSuite::setUp() 0.00 12.46 0.00 1 0.00 0.00 AbstractCellBasedTestSuite::tearDown() 0.00 12.46 0.00 1 0.00 11.11 Test3dTissueRepresentativeSimulation::Test3dNodeBasedInBoxWithSloughing() 0.00 12.46 0.00 1 0.00 0.00 AbstractCellBasedWithTimingsTestSuite::setUp() 0.00 12.46 0.00 1 0.00 0.00 AbstractCellBasedWithTimingsTestSuite::tearDown() 0.00 12.46 0.00 1 0.00 0.00 boost::shared_ptr >::shared_ptr >(RepulsionForce<3u>*) 0.00 12.46 0.00 1 0.00 0.00 void boost::shared_ptr::reset(StemCellProliferativeType*) 0.00 12.46 0.00 1 0.00 0.00 void boost::shared_ptr::reset(WildTypeCellMutationState*) 0.00 12.46 0.00 1 0.00 0.00 boost::shared_ptr::shared_ptr(StemCellProliferativeType*) 0.00 12.46 0.00 1 0.00 0.00 boost::shared_ptr::shared_ptr(WildTypeCellMutationState*) 0.00 12.46 0.00 1 0.00 0.00 boost::shared_ptr >::shared_ptr >(PlaneBasedCellKiller<3u>*) 0.00 12.46 0.00 1 0.00 0.00 boost::shared_ptr::shared_ptr(TransitCellProliferativeType*) 0.00 12.46 0.00 1 0.00 0.00 boost::detail::shared_count::shared_count >(RepulsionForce<3u>*) 0.00 12.46 0.00 1 0.00 0.00 boost::detail::shared_count::shared_count >(PlaneBasedCellKiller<3u>*) 0.00 12.46 0.00 1 0.00 0.00 boost::detail::shared_count::shared_count(StemCellProliferativeType*) 0.00 12.46 0.00 1 0.00 0.00 boost::detail::shared_count::shared_count(TransitCellProliferativeType*) 0.00 12.46 0.00 1 0.00 0.00 boost::detail::shared_count::shared_count(WildTypeCellMutationState*) 0.00 12.46 0.00 1 0.00 0.00 boost::detail::sp_counted_impl_p >::dispose() 0.00 12.46 0.00 1 0.00 0.00 boost::detail::sp_counted_impl_p >::~sp_counted_impl_p() 0.00 12.46 0.00 1 0.00 0.00 boost::detail::sp_counted_impl_p >::dispose() 0.00 12.46 0.00 1 0.00 0.00 boost::detail::sp_counted_impl_p >::~sp_counted_impl_p() 0.00 12.46 0.00 1 0.00 0.00 boost::detail::sp_counted_impl_p::dispose() 0.00 12.46 0.00 1 0.00 0.00 boost::detail::sp_counted_impl_p::~sp_counted_impl_p() 0.00 12.46 0.00 1 0.00 0.00 boost::detail::sp_counted_impl_p::dispose() 0.00 12.46 0.00 1 0.00 0.00 boost::detail::sp_counted_impl_p::~sp_counted_impl_p() 0.00 12.46 0.00 1 0.00 0.00 void boost::detail::sp_pointer_construct, RepulsionForce<3u> >(boost::shared_ptr >*, RepulsionForce<3u>*, boost::detail::shared_count&) 0.00 12.46 0.00 1 0.00 0.00 void boost::detail::sp_pointer_construct(boost::shared_ptr*, StemCellProliferativeType*, boost::detail::shared_count&) 0.00 12.46 0.00 1 0.00 0.00 void boost::detail::sp_pointer_construct(boost::shared_ptr*, WildTypeCellMutationState*, boost::detail::shared_count&) 0.00 12.46 0.00 1 0.00 0.00 void boost::detail::sp_pointer_construct, PlaneBasedCellKiller<3u> >(boost::shared_ptr >*, PlaneBasedCellKiller<3u>*, boost::detail::shared_count&) 0.00 12.46 0.00 1 0.00 0.00 void boost::detail::sp_pointer_construct(boost::shared_ptr*, TransitCellProliferativeType*, boost::detail::shared_count&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestRunner::WorldGuard::WorldGuard() 0.00 12.46 0.00 1 0.00 11.11 CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) 0.00 12.46 0.00 1 0.00 11.11 CxxTest::TestRunner::runTest(CxxTest::TestDescription&) 0.00 12.46 0.00 1 0.00 11.11 CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) 0.00 12.46 0.00 1 0.00 11.11 CxxTest::TestRunner::runWorld() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestTracker::enterSuite(CxxTest::SuiteDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestTracker::enterWorld(CxxTest::WorldDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestTracker::initialize() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestTracker::leaveSuite(CxxTest::SuiteDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestTracker::leaveWorld(CxxTest::WorldDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestTracker::enterTest(CxxTest::TestDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestTracker::leaveTest(CxxTest::TestDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestTracker::TestTracker() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::digitToChar(unsigned int) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::ErrorPrinter::Adapter::~Adapter() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::ErrorPrinter::ErrorPrinter(std::ostream&, char const*, char const*) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::ErrorPrinter::~ErrorPrinter() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestListener::leaveSuite(CxxTest::SuiteDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::GlobalFixture::setUp() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::GlobalFixture::tearDown() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::GlobalFixture::GlobalFixture() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::GlobalFixture::~GlobalFixture() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::ErrorFormatter::enterSuite(CxxTest::SuiteDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::ErrorFormatter::enterWorld(CxxTest::WorldDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::ErrorFormatter::leaveWorld(CxxTest::WorldDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::ErrorFormatter::totalTests(CxxTest::OutputStream&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::ErrorFormatter::enterTest(CxxTest::TestDescription const&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::ErrorFormatter::leaveTest(CxxTest::TestDescription const&) 0.00 12.46 0.00 1 0.00 0.00 void CxxTest::doAssertEquals(char const*, unsigned int, char const*, unsigned int, char const*, unsigned int, char const*) 0.00 12.46 0.00 1 0.00 0.00 char* CxxTest::numberToString(unsigned int, char*, unsigned int, unsigned int, unsigned int) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealTestDescription::initialize(CxxTest::List&, CxxTest::SuiteDescription&, unsigned int, char const*) 0.00 12.46 0.00 1 0.00 11.11 CxxTest::RealTestDescription::run() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealTestDescription::next() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealTestDescription::setUp() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealTestDescription::tearDown() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealTestDescription::RealTestDescription(CxxTest::List&, CxxTest::SuiteDescription&, unsigned int, char const*) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::DummyTestDescription::DummyTestDescription() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealSuiteDescription::initialize(char const*, unsigned int, char const*, CxxTest::List&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealSuiteDescription::next() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealSuiteDescription::firstTest() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealSuiteDescription::RealSuiteDescription(char const*, unsigned int, char const*, CxxTest::List&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealWorldDescription::firstSuite() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealWorldDescription::setUp() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealWorldDescription::tearDown() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::DummySuiteDescription::DummySuiteDescription() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::DummySuiteDescription::~DummySuiteDescription() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::DummyWorldDescription::DummyWorldDescription() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::DummyWorldDescription::~DummyWorldDescription() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::StaticSuiteDescription::doInitialize(CxxTest::TestSuite&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::StaticSuiteDescription::setUp() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::StaticSuiteDescription::tearDown() 0.00 12.46 0.00 1 0.00 0.00 CxxTest::StaticSuiteDescription::StaticSuiteDescription(char const*, unsigned int, char const*, CxxTest::TestSuite&, CxxTest::List&) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::Link::detach(CxxTest::List&) 0.00 12.46 0.00 1 0.00 0.00 bool CxxTest::equals(unsigned int, unsigned int) 0.00 12.46 0.00 1 0.00 0.00 CxxTest::TestSuite::~TestSuite() 0.00 12.46 0.00 1 0.00 11.11 TestDescription_Test3dTissueRepresentativeSimulation_Test3dNodeBasedInBoxWithSloughing::runTest() 0.00 12.46 0.00 1 0.00 0.00 TestDescription_Test3dTissueRepresentativeSimulation_Test3dNodeBasedInBoxWithSloughing::TestDescription_Test3dTissueRepresentativeSimulation_Test3dNodeBasedInBoxWithSloughing() 0.00 12.46 0.00 1 0.00 0.00 boost::shared_ptr >::operator->() const 0.00 12.46 0.00 1 0.00 0.00 CxxTest::WorldDescription::strTotalTests(char*) const 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealTestDescription::testName() const 0.00 12.46 0.00 1 0.00 0.00 CxxTest::RealSuiteDescription::suiteName() const 0.00 12.46 0.00 1 0.00 0.00 std::_Vector_base >, std::allocator > > >::~_Vector_base() 0.00 12.46 0.00 1 0.00 0.00 std::_Vector_base >, std::allocator > > >::~_Vector_base() 0.00 12.46 0.00 1 0.00 0.00 std::_Vector_base*, std::allocator*> >::~_Vector_base() 0.00 12.46 0.00 1 0.00 0.00 std::_Vector_base >::~_Vector_base() 0.00 12.46 0.00 1 0.00 0.00 std::__new_allocator >::allocate(unsigned long, void const*) 0.00 12.46 0.00 1 0.00 0.00 std::vector >, std::allocator > > >::~vector() 0.00 12.46 0.00 1 0.00 0.00 std::vector >, std::allocator > > >::~vector() 0.00 12.46 0.00 1 0.00 0.00 std::vector, std::allocator > >::clear() 0.00 12.46 0.00 1 0.00 0.00 std::vector, std::allocator > >::reserve(unsigned long) 0.00 12.46 0.00 1 0.00 0.00 std::vector, std::allocator > >::~vector() 0.00 12.46 0.00 1 0.00 0.00 void std::_Destroy >*>(boost::shared_ptr >*, boost::shared_ptr >*) 0.00 12.46 0.00 1 0.00 0.00 void std::_Destroy >*>(boost::shared_ptr >*, boost::shared_ptr >*) % the percentage of the total running time of the time program used by this function. cumulative a running sum of the number of seconds accounted seconds for by this function and those listed above it. self the number of seconds accounted for by this seconds function alone. This is the major sort for this listing. calls the number of times this function was invoked, if this function is profiled, else blank. self the average number of milliseconds spent in this ms/call function per call, if this function is profiled, else blank. total the average number of milliseconds spent in this ms/call function and its descendents per call, if this function is profiled, else blank. name the name of the function. This is the minor sort for this listing. The index shows the location of the function in the gprof listing. If the index is in parenthesis it shows where it would appear in the gprof listing if it were to be printed. Copyright (C) 2012-2026 Free Software Foundation, Inc. Copying and distribution of this file, with or without modification, are permitted in any medium without royalty provided the copyright notice and this notice are preserved. Call graph (explanation follows) granularity: each sample hit covers 4 byte(s) for 0.08% of 12.46 seconds index % time self children called name [1] 89.2 0.00 11.11 main [1] 0.00 11.11 1/1 CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) [3] 0.00 0.00 1/12 CxxTest::TestTracker::tracker() [99] 0.00 0.00 1/1 CxxTest::ErrorPrinter::ErrorPrinter(std::ostream&, char const*, char const*) [217] 0.00 0.00 1/1 CxxTest::ErrorPrinter::~ErrorPrinter() [218] ----------------------------------------------- 0.00 11.11 1/1 TestDescription_Test3dTissueRepresentativeSimulation_Test3dNodeBasedInBoxWithSloughing::runTest() [8] [2] 89.2 0.00 11.11 1 Test3dTissueRepresentativeSimulation::Test3dNodeBasedInBoxWithSloughing() [2] 0.00 6.25 3/3 boost::numeric::ublas::c_vector::c_vector > >(boost::numeric::ublas::vector_expression > > const&) [11] 2.70 0.00 3/3 boost::numeric::ublas::c_vector::operator()(unsigned long) [15] 0.07 1.49 100/100 AbstractCellPopulation<3u, 3u>::Iterator::operator++() [20] 0.02 0.24 1/1 AbstractCellPopulation<3u, 3u>::Iterator::operator*() [31] 0.00 0.25 1/1 CellsGenerator::GenerateBasicRandom(std::vector, std::allocator > >&, unsigned int, boost::shared_ptr) [32] 0.00 0.07 1/1 AbstractCellPopulation<3u, 3u>::Begin() [37] 0.00 0.01 3/3 boost::numeric::ublas::c_vector::c_vector >, boost::numeric::ublas::scalar_negate > >(boost::numeric::ublas::vector_expression >, boost::numeric::ublas::scalar_negate > > const&) [49] 0.00 0.01 3/3 boost::numeric::ublas::c_vector::c_vector > >(boost::numeric::ublas::vector_expression > > const&) [48] 0.00 0.01 3/3 boost::numeric::ublas::c_vector::c_vector >, boost::numeric::ublas::scalar_multiplies > >(boost::numeric::ublas::vector_expression >, boost::numeric::ublas::scalar_multiplies > > const&) [50] 0.00 0.00 1/1 std::vector, std::allocator > >::~vector() [60] 0.00 0.00 17/40388425 boost::detail::sp_counted_base::release() [29] 0.00 0.00 8/57559825 boost::detail::shared_count::shared_count(boost::detail::shared_count const&) [26] 0.00 0.00 1/1 OffLatticeSimulation<3u, 3u>::~OffLatticeSimulation() [63] 0.00 0.00 1728/1728 Node<3u>*& std::vector*, std::allocator*> >::emplace_back*>(Node<3u>*&&) [95] 0.00 0.00 5/5 boost::shared_ptr >::shared_ptr >(PlaneBoundaryCondition<3u, 3u>*) [120] 0.00 0.00 3/3 boost::numeric::ublas::vector_unary_traits >, boost::numeric::ublas::scalar_negate >::value_type> >::result_type boost::numeric::ublas::operator- > >(boost::numeric::ublas::vector_expression > > const&) [143] 0.00 0.00 3/3 boost::enable_if >::value_type>, boost::numeric::ublas::vector_binary_scalar1_traits >, boost::numeric::ublas::scalar_multiplies >::value_type> >::result_type>::type boost::numeric::ublas::operator* > >(double const&, boost::numeric::ublas::vector_expression > > const&) [142] 0.00 0.00 3/3 void CxxTest::doAssertDelta(char const*, unsigned int, char const*, double, char const*, double, char const*, double, char const*) [146] 0.00 0.00 1/1 boost::shared_ptr::shared_ptr(TransitCellProliferativeType*) [187] 0.00 0.00 1/1 std::_Vector_base >::~_Vector_base() [264] 0.00 0.00 1/2 std::__cxx11::basic_string, std::allocator >::basic_string >(char const*, std::allocator const&) [171] 0.00 0.00 1/1 boost::shared_ptr >::shared_ptr >(RepulsionForce<3u>*) [181] 0.00 0.00 1/1 boost::shared_ptr >::operator->() const [257] 0.00 0.00 1/1 boost::shared_ptr >::shared_ptr >(PlaneBasedCellKiller<3u>*) [186] 0.00 0.00 1/1 void CxxTest::doAssertEquals(char const*, unsigned int, char const*, unsigned int, char const*, unsigned int, char const*) [230] 0.00 0.00 1/1 std::_Vector_base*, std::allocator*> >::~_Vector_base() [263] ----------------------------------------------- 0.00 11.11 1/1 main [1] [3] 89.2 0.00 11.11 1 CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) [3] 0.00 11.11 1/1 CxxTest::TestRunner::runWorld() [6] 0.00 0.00 2/12 CxxTest::TestTracker::tracker() [99] 0.00 0.00 2/3 CxxTest::TestTracker::setListener(CxxTest::TestListener*) [144] ----------------------------------------------- 0.00 11.11 1/1 CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) [5] [4] 89.2 0.00 11.11 1 CxxTest::TestRunner::runTest(CxxTest::TestDescription&) [4] 0.00 11.11 1/1 CxxTest::RealTestDescription::run() [7] 0.00 0.00 2/12 CxxTest::TestTracker::tracker() [99] 0.00 0.00 1/3 CxxTest::maxDumpSize() [145] 0.00 0.00 1/1 CxxTest::RealTestDescription::setUp() [234] 0.00 0.00 1/1 CxxTest::TestTracker::enterTest(CxxTest::TestDescription const&) [212] 0.00 0.00 1/1 CxxTest::RealTestDescription::tearDown() [235] 0.00 0.00 1/4 CxxTest::setMaxDumpSize(unsigned int) [133] 0.00 0.00 1/1 CxxTest::TestTracker::leaveTest(CxxTest::TestDescription const&) [213] ----------------------------------------------- 0.00 11.11 1/1 CxxTest::TestRunner::runWorld() [6] [5] 89.2 0.00 11.11 1 CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) [5] 0.00 11.11 1/1 CxxTest::TestRunner::runTest(CxxTest::TestDescription&) [4] 0.00 0.00 2/12 CxxTest::TestTracker::tracker() [99] 0.00 0.00 1/3 CxxTest::maxDumpSize() [145] 0.00 0.00 1/1 CxxTest::TestTracker::enterSuite(CxxTest::SuiteDescription const&) [207] 0.00 0.00 1/1 CxxTest::StaticSuiteDescription::setUp() [250] 0.00 0.00 1/1 CxxTest::RealSuiteDescription::firstTest() [240] 0.00 0.00 1/1 CxxTest::RealTestDescription::next() [233] 0.00 0.00 1/12 CxxTest::Link::active() const [100] 0.00 0.00 1/1 CxxTest::StaticSuiteDescription::tearDown() [251] 0.00 0.00 1/1 CxxTest::TestTracker::leaveSuite(CxxTest::SuiteDescription const&) [210] 0.00 0.00 1/4 CxxTest::setMaxDumpSize(unsigned int) [133] ----------------------------------------------- 0.00 11.11 1/1 CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) [3] [6] 89.2 0.00 11.11 1 CxxTest::TestRunner::runWorld() [6] 0.00 11.11 1/1 CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) [5] 0.00 0.00 2/12 CxxTest::TestTracker::tracker() [99] 0.00 0.00 1/7 CxxTest::Link::Link() [112] 0.00 0.00 1/1 CxxTest::TestRunner::WorldGuard::WorldGuard() [206] 0.00 0.00 1/1 CxxTest::RealWorldDescription::setUp() [243] 0.00 0.00 1/1 CxxTest::TestTracker::enterWorld(CxxTest::WorldDescription const&) [208] 0.00 0.00 1/1 CxxTest::RealWorldDescription::firstSuite() [242] 0.00 0.00 1/1 CxxTest::RealSuiteDescription::next() [239] 0.00 0.00 1/12 CxxTest::Link::active() const [100] 0.00 0.00 1/1 CxxTest::RealWorldDescription::tearDown() [244] 0.00 0.00 1/1 CxxTest::TestTracker::leaveWorld(CxxTest::WorldDescription const&) [211] 0.00 0.00 1/4 CxxTest::setMaxDumpSize(unsigned int) [133] 0.00 0.00 1/2 CxxTest::WorldDescription::~WorldDescription() [161] ----------------------------------------------- 0.00 11.11 1/1 CxxTest::TestRunner::runTest(CxxTest::TestDescription&) [4] [7] 89.2 0.00 11.11 1 CxxTest::RealTestDescription::run() [7] 0.00 11.11 1/1 TestDescription_Test3dTissueRepresentativeSimulation_Test3dNodeBasedInBoxWithSloughing::runTest() [8] ----------------------------------------------- 0.00 11.11 1/1 CxxTest::RealTestDescription::run() [7] [8] 89.2 0.00 11.11 1 TestDescription_Test3dTissueRepresentativeSimulation_Test3dNodeBasedInBoxWithSloughing::runTest() [8] 0.00 11.11 1/1 Test3dTissueRepresentativeSimulation::Test3dNodeBasedInBoxWithSloughing() [2] ----------------------------------------------- 0.00 6.25 2482/2482 boost::numeric::ublas::c_vector::c_vector > >(boost::numeric::ublas::vector_expression > > const&) [11] [9] 50.1 0.00 6.25 2482 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::zero_vector > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression > > const&) [9] 0.00 6.25 2482/2482 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::zero_vector > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression > > const&, boost::numeric::ublas::sparse_tag) [10] ----------------------------------------------- 0.00 6.25 2482/2482 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::zero_vector > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression > > const&) [9] [10] 50.1 0.00 6.25 2482 void boost::numeric::ublas::vector_assign, boost::numeric::ublas::zero_vector > >(boost::numeric::ublas::c_vector&, boost::numeric::ublas::vector_expression