Chaste
Commit::baa90ac2819b962188b7562f2326be23c47859a7
AbstractCaSwitchingUpdateRule.hpp
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/*
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Copyright (c) 2005-2024, University of Oxford.
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All rights reserved.
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University of Oxford means the Chancellor, Masters and Scholars of the
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University of Oxford, having an administrative office at Wellington
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Square, Oxford OX1 2JD, UK.
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This file is part of Chaste.
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice,
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this list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of the University of Oxford nor the names of its
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contributors may be used to endorse or promote products derived from this
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software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
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GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
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HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
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OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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*/
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#ifndef ABSTRACTCASWITCHINGUPDATERULE_HPP_
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#define ABSTRACTCASWITCHINGUPDATERULE_HPP_
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#include "AbstractUpdateRule.hpp"
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#include "CaBasedCellPopulation.hpp"
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template
<
unsigned
DIM>
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class
PottsBasedCellPopulation
;
// Circular definition
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template
<
unsigned
DIM>
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class
AbstractCaSwitchingUpdateRule
:
public
AbstractUpdateRule
<DIM>
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{
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friend
class
boost::serialization::access
;
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template
<
class
Archive>
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void
serialize
(Archive & archive,
const
unsigned
int
version)
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{
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archive & boost::serialization::base_object<AbstractUpdateRule<DIM> >(*this);
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}
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public
:
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AbstractCaSwitchingUpdateRule
();
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virtual
~AbstractCaSwitchingUpdateRule
();
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double
virtual
EvaluateSwitchingProbability
(
unsigned
currentNodeIndex,
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unsigned
neighbourNodeIndex,
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CaBasedCellPopulation<DIM>
& rCellPopulation,
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double
dt,
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double
deltaX)=0;
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virtual
void
OutputUpdateRuleParameters
(out_stream& rParamsFile);
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};
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#endif
/*ABSTRACTCASWITCHINGUPDATERULE_HPP_*/
AbstractCaSwitchingUpdateRule
Definition
AbstractCaSwitchingUpdateRule.hpp:50
AbstractCaSwitchingUpdateRule::AbstractCaSwitchingUpdateRule
AbstractCaSwitchingUpdateRule()
Definition
AbstractCaSwitchingUpdateRule.cpp:39
AbstractCaSwitchingUpdateRule::OutputUpdateRuleParameters
virtual void OutputUpdateRuleParameters(out_stream &rParamsFile)
Definition
AbstractCaSwitchingUpdateRule.cpp:50
AbstractCaSwitchingUpdateRule::serialize
void serialize(Archive &archive, const unsigned int version)
Definition
AbstractCaSwitchingUpdateRule.hpp:61
AbstractCaSwitchingUpdateRule::EvaluateSwitchingProbability
virtual double EvaluateSwitchingProbability(unsigned currentNodeIndex, unsigned neighbourNodeIndex, CaBasedCellPopulation< DIM > &rCellPopulation, double dt, double deltaX)=0
AbstractCaSwitchingUpdateRule::access
friend class boost::serialization::access
Definition
AbstractCaSwitchingUpdateRule.hpp:52
AbstractCaSwitchingUpdateRule::~AbstractCaSwitchingUpdateRule
virtual ~AbstractCaSwitchingUpdateRule()
Definition
AbstractCaSwitchingUpdateRule.cpp:45
AbstractUpdateRule
Definition
AbstractUpdateRule.hpp:49
CaBasedCellPopulation
Definition
CaBasedCellPopulation.hpp:65
PottsBasedCellPopulation
Definition
PottsBasedCellPopulation.hpp:61
cell_based
src
population
update_rules
AbstractCaSwitchingUpdateRule.hpp
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