Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
AbstractCardiacCellFactory.hpp
1/*
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35
36
37#ifndef ABSTRACTCARDIACCELLFACTORY_HPP_
38#define ABSTRACTCARDIACCELLFACTORY_HPP_
39
40#include <boost/shared_ptr.hpp>
41
42#include "AbstractCardiacCellInterface.hpp"
43#include "AbstractTetrahedralMesh.hpp"
44#include "AbstractIvpOdeSolver.hpp"
45#include "EulerIvpOdeSolver.hpp"
46#include "HeartGeometryInformation.hpp"
47#include "HeartRegionCodes.hpp"
48#include "ZeroStimulus.hpp"
49
65#ifdef DOXYGEN_CHASTE_ISSUE_199 // See https://github.com/Chaste/Chaste/issues/199
66template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
67#else
68template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
69#endif
71{
72private:
77
83
84protected:
86 boost::shared_ptr<ZeroStimulus> mpZeroStimulus;
88 boost::shared_ptr<AbstractIvpOdeSolver> mpSolver;
89
90public:
101
109
118 virtual void FinaliseCellCreation(std::vector< AbstractCardiacCellInterface* >* pCellsDistributed,
119 unsigned lo, unsigned hi);
120
125 virtual void FillInCellularTransmuralAreas();
126
130 virtual unsigned GetNumberOfCells();
131
137 AbstractCardiacCellFactory(boost::shared_ptr<AbstractIvpOdeSolver> pSolver = boost::shared_ptr<AbstractIvpOdeSolver>(new EulerIvpOdeSolver));
142
147
152
159
164};
165
166#endif /*ABSTRACTCARDIACCELLFACTORY_HPP_*/
virtual AbstractCardiacCellInterface * CreateCardiacCellForNode(Node< SPACE_DIM > *pNode)
virtual void SetMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * GetMesh()
virtual void FinaliseCellCreation(std::vector< AbstractCardiacCellInterface * > *pCellsDistributed, unsigned lo, unsigned hi)
void SetHeartGeometryInformation(HeartGeometryInformation< SPACE_DIM > *pHeartGeometryInformation)
boost::shared_ptr< AbstractIvpOdeSolver > mpSolver
HeartGeometryInformation< SPACE_DIM > * mpHeartGeometryInformation
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * mpMesh
boost::shared_ptr< ZeroStimulus > mpZeroStimulus
virtual AbstractCardiacCellInterface * CreateCardiacCellForTissueNode(Node< SPACE_DIM > *pNode)=0
HeartGeometryInformation< SPACE_DIM > * GetHeartGeometryInformation()
Definition Node.hpp:59