AbstractCellWriter.hpp

/*
 
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This file is part of Chaste.
 
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 * Redistributions of source code must retain the above copyright notice,
   this list of conditions and the following disclaimer.
 * Redistributions in binary form must reproduce the above copyright notice,
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   software without specific prior written permission.
 
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*/
 
#ifndef ABSTRACTCELLWRITER_HPP_
#define ABSTRACTCELLWRITER_HPP_
 
#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
#include "AbstractCellBasedWriter.hpp"
#include "Cell.hpp"
#include "UblasVectorInclude.hpp"
 
// Forward declaration prevents circular include chain
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> class AbstractCellPopulation;
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractCellWriter : public AbstractCellBasedWriter<ELEMENT_DIM, SPACE_DIM>
{
private:
 
    friend class boost::serialization::access;
 
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellBasedWriter<ELEMENT_DIM, SPACE_DIM> >(*this);
        archive & mOutputScalarData;
        archive & mOutputVectorData;
        archive & mVtkCellDataName;
        archive & mVtkVectorCellDataName;
    }
 
protected:
 
    bool mOutputScalarData;
 
    bool mOutputVectorData;
 
    std::string mVtkCellDataName;
 
    std::string mVtkVectorCellDataName;
 
public:
 
    AbstractCellWriter(const std::string& rFileName);
 
    virtual double GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation);
 
    virtual c_vector<double, SPACE_DIM> GetVectorCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation);
 
    virtual void VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)=0;
 
    bool GetOutputScalarData();
 
    bool GetOutputVectorData();
 
    void SetVtkCellDataName(std::string vtkCellDataName);
 
    void SetVtkVectorCellDataName(std::string vtkCellDataName);
 
    std::string GetVtkCellDataName();
 
    std::string GetVtkVectorCellDataName();
};
 
#endif /*ABSTRACTCELLWRITER_HPP_*/