AbstractExtendedBidomainSolver.hpp

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*/
 
 
#ifndef ABSTRACTEXTENDEDBIDOMAINSOLVER_HPP_
#define ABSTRACTEXTENDEDBIDOMAINSOLVER_HPP_
 
#include "AbstractDynamicLinearPdeSolver.hpp"
#include "ExtendedBidomainTissue.hpp"
#include "HeartConfig.hpp"
#include "ExtendedBidomainAssembler.hpp"
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractExtendedBidomainSolver
    : public AbstractDynamicLinearPdeSolver<ELEMENT_DIM,SPACE_DIM,3>
{
 
protected:
 
    bool mBathSimulation;
 
 
    ExtendedBidomainTissue<SPACE_DIM>* mpExtendedBidomainTissue;
 
    BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,3>* mpBoundaryConditions;
 
    ExtendedBidomainAssembler<ELEMENT_DIM,SPACE_DIM>* mpExtendedBidomainAssembler;
 
    HeartConfig* mpConfig;
 
    bool mNullSpaceCreated;
 
    std::vector<unsigned> mFixedExtracellularPotentialNodes;
 
     unsigned mRowForAverageOfPhiZeroed;
 
 
    void InitialiseForSolve(Vec initialSolution);
 
 
    virtual void CheckCompatibilityCondition();
 
 
    void PrepareForSetupLinearSystem(Vec existingSolution);
 
    virtual void FinaliseLinearSystem(Vec existingSolution);
 
 
    virtual Vec GenerateNullBasis() const;
 
public:
 
    AbstractExtendedBidomainSolver(bool bathSimulation,
                         AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
                         ExtendedBidomainTissue<SPACE_DIM>* pTissue,
                         BoundaryConditionsContainer<ELEMENT_DIM, SPACE_DIM, 3>* pBcc);
 
    virtual ~AbstractExtendedBidomainSolver();
 
    void SetFixedExtracellularPotentialNodes(std::vector<unsigned> fixedExtracellularPotentialNodes);
 
     void SetRowForAverageOfPhiZeroed(unsigned rowMeanPhiEZero);
 
     BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,3>* GetBoundaryConditions()
     {
         return mpBoundaryConditions;
     }
};
 
#endif /*ABSTRACTEXTENDEDBIDOMAINSOLVER_HPP_*/