AbstractParameterisedSystem.hpp

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*/
 
#ifndef ABSTRACTPARAMETERISEDSYSTEM_HPP_
#define ABSTRACTPARAMETERISEDSYSTEM_HPP_
 
#include <vector>
#include <string>
#include <boost/shared_ptr.hpp>
 
#include "AbstractUntemplatedParameterisedSystem.hpp"
 
 
template<typename VECTOR>
class AbstractParameterisedSystem : public AbstractUntemplatedParameterisedSystem
{
friend class TestAbstractCvodeSystem;
 
private:
    std::string GetStateMessage(const std::string& rMessage, VECTOR Y);
 
protected:
    VECTOR mStateVariables;
 
    VECTOR mParameters;
 
    std::string DumpState(const std::string& rMessage);
 
    std::string DumpState(const std::string& rMessage,
                          VECTOR Y);
 
    std::string DumpState(const std::string& rMessage,
                          VECTOR Y,
                          double time);
 
    void CheckParametersOnLoad(const std::vector<double>& rParameters,
                               const std::vector<std::string>& rParameterNames);
 
public:
    AbstractParameterisedSystem(unsigned numberOfStateVariables);
 
    //
    // State variable methods
    //
 
    VECTOR& rGetStateVariables();
 
    VECTOR GetStateVariables();
 
    void SetStateVariables(const VECTOR& rStateVariables);
 
    double GetStateVariable(unsigned index) const;
 
    double GetStateVariable(const std::string& rName) const;
 
    void SetStateVariable(unsigned index, double newValue);
 
    void SetStateVariable(const std::string& rName, double newValue);
 
    virtual void VerifyStateVariables()
    {}
 
    //
    // Initial condition methods
    //
 
    void SetDefaultInitialConditions(const VECTOR& rInitialConditions);
 
    void SetDefaultInitialCondition(unsigned index, double initialCondition);
 
    VECTOR GetInitialConditions() const;
 
    void ResetToInitialConditions();
 
    //
    // Parameter methods
    //
 
    double GetParameter(unsigned index) const;
 
    double GetParameter(const std::string& rName) const;
 
    void SetParameter(const std::string& rName, double value);
 
    void SetParameter(unsigned index, double value);
 
    //
    // "Any variable" methods
    //
 
    double GetAnyVariable(unsigned index, double time=0.0,
                          VECTOR* pDerivedQuantities=NULL);
 
    double GetAnyVariable(const std::string& rName, double time=0.0,
                          VECTOR* pDerivedQuantities=NULL);
 
    void SetAnyVariable(unsigned index, double value);
 
    void SetAnyVariable(const std::string& rName, double value);
 
    //
    // Derived quantity methods
    //
 
    virtual VECTOR ComputeDerivedQuantities(double time,
                                            const VECTOR& rState);
 
    VECTOR ComputeDerivedQuantitiesFromCurrentState(double time);
};
 
#endif /*ABSTRACTPARAMETERISEDSYSTEM_HPP_*/