Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
AbstractTargetAreaModifier.cpp
1/*
2
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34*/
35
36#include "AbstractTargetAreaModifier.hpp"
37
38template<unsigned DIM>
44
45template<unsigned DIM>
49
50template<unsigned DIM>
52{
53 UpdateTargetAreas(rCellPopulation);
54}
55
56template<unsigned DIM>
57void AbstractTargetAreaModifier<DIM>::SetupSolve(AbstractCellPopulation<DIM,DIM>& rCellPopulation, std::string outputDirectory)
58{
59 /*
60 * We must update CellData in SetupSolve(), otherwise it will not have been
61 * fully initialised by the time we enter the main time loop.
62 */
63 UpdateTargetAreas(rCellPopulation);
64}
65
66template<unsigned DIM>
68{
69 // Loop over the list of cells, rather than using the population iterator, so as to include dead cells
70 for (std::list<CellPtr>::iterator cell_iter = rCellPopulation.rGetCells().begin();
71 cell_iter != rCellPopulation.rGetCells().end();
72 ++cell_iter)
73 {
74 UpdateTargetAreaOfCell(*cell_iter);
75 }
76}
77
78template<unsigned DIM>
80{
81 return mReferenceTargetArea;
82}
83
84template<unsigned DIM>
86{
87 assert(referenceTargetArea >= 0.0);
88 mReferenceTargetArea = referenceTargetArea;
89}
90
91template<unsigned DIM>
93{
94 *rParamsFile << "\t\t\t<ReferenceTargetArea>" << mReferenceTargetArea << "</ReferenceTargetArea>\n";
95
96 // Next, call method on direct parent class
98}
99
100// Explicit instantiation
101template class AbstractTargetAreaModifier<1>;
102template class AbstractTargetAreaModifier<2>;
103template class AbstractTargetAreaModifier<3>;
virtual void OutputSimulationModifierParameters(out_stream &rParamsFile)=0
std::list< CellPtr > & rGetCells()
void SetReferenceTargetArea(double referenceTargetArea)
virtual void OutputSimulationModifierParameters(out_stream &rParamsFile)
void UpdateTargetAreas(AbstractCellPopulation< DIM, DIM > &rCellPopulation)
virtual void UpdateAtEndOfTimeStep(AbstractCellPopulation< DIM, DIM > &rCellPopulation)
virtual void SetupSolve(AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory)