Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
AveragedSourceEllipticPde.hpp
1/*
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34*/
35
36#ifndef AVERAGEDSOURCEELLIPTICPDE_HPP_
37#define AVERAGEDSOURCEELLIPTICPDE_HPP_
38
40#include <boost/serialization/base_object.hpp>
41#include <boost/serialization/vector.hpp>
42
43#include "AbstractCellPopulation.hpp"
44#include "TetrahedralMesh.hpp"
45#include "AbstractLinearEllipticPde.hpp"
46
67template<unsigned DIM>
69{
70 friend class TestCellBasedEllipticPdes;
71
72private:
73
82 template<class Archive>
83 void serialize(Archive & archive, const unsigned int version)
84 {
85 archive & boost::serialization::base_object<AbstractLinearEllipticPde<DIM, DIM> >(*this);
86 archive & mSourceCoefficient;
87 archive & mDiffusionCoefficient;
89 }
90
91protected:
92
95
98
101
103 std::vector<double> mCellDensityOnCoarseElements;
104
105public:
106
115 double sourceCoefficient=0.0,
116 double diffusionCoefficient=1.0);
117
122
126 double GetCoefficient() const;
127
134 void virtual SetupSourceTerms(TetrahedralMesh<DIM,DIM>& rCoarseMesh, std::map<CellPtr, unsigned>* pCellPdeElementMap=nullptr);
135
146
157
165 c_matrix<double,DIM,DIM> ComputeDiffusionTerm(const ChastePoint<DIM>& rX);
166
172 double GetUptakeRateForElement(unsigned elementIndex);
173};
174
177
178namespace boost
179{
180namespace serialization
181{
185template<class Archive, unsigned DIM>
186inline void save_construct_data(
187 Archive & ar, const AveragedSourceEllipticPde<DIM>* t, const unsigned int file_version)
188{
189 // Save data required to construct instance
190 const AbstractCellPopulation<DIM>* p_cell_population = &(t->rGetCellPopulation());
191 ar & p_cell_population;
192}
193
197template<class Archive, unsigned DIM>
198inline void load_construct_data(
199 Archive & ar, AveragedSourceEllipticPde<DIM>* t, const unsigned int file_version)
200{
201 // Retrieve data from archive required to construct new instance
202 AbstractCellPopulation<DIM>* p_cell_population;
203 ar >> p_cell_population;
204
205 // Invoke inplace constructor to initialise instance
206 ::new(t)AveragedSourceEllipticPde<DIM>(*p_cell_population);
207}
208}
209} // namespace ...
210
211#endif /*AVERAGEDSOURCEELLIPTICPDE_HPP_*/
gcov doesn't like this file...
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
double GetUptakeRateForElement(unsigned elementIndex)
c_matrix< double, DIM, DIM > ComputeDiffusionTerm(const ChastePoint< DIM > &rX)
double ComputeConstantInUSourceTerm(const ChastePoint< DIM > &rX, Element< DIM, DIM > *pElement)
void serialize(Archive &archive, const unsigned int version)
std::vector< double > mCellDensityOnCoarseElements
AbstractCellPopulation< DIM > & mrCellPopulation
virtual void SetupSourceTerms(TetrahedralMesh< DIM, DIM > &rCoarseMesh, std::map< CellPtr, unsigned > *pCellPdeElementMap=nullptr)
double ComputeLinearInUCoeffInSourceTerm(const ChastePoint< DIM > &rX, Element< DIM, DIM > *pElement)
friend class boost::serialization::access
const AbstractCellPopulation< DIM > & rGetCellPopulation() const