Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
CellBasedSimulationArchiver.hpp
1/*
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34*/
35
36#ifndef CELLBASEDSIMULATIONARCHIVER_HPP_
37#define CELLBASEDSIMULATIONARCHIVER_HPP_
38
39// Must be included before any other serialization headers
41
42#include <string>
43
44// The headers below are needed by the templated implementation, which is in this header
45#include <fstream>
46#include <sstream>
47
48#include "ArchiveLocationInfo.hpp"
49#include "ArchiveOpener.hpp"
50#include "FileFinder.hpp"
51#include "SimulationTime.hpp"
52
58template<unsigned ELEMENT_DIM, class SIM, unsigned SPACE_DIM=ELEMENT_DIM>
60{
61public:
62
72 static SIM* Load(const std::string& rArchiveDirectory, const double& rTimeStamp);
73
86 static void Save(SIM* pSim);
87};
88
89template<unsigned ELEMENT_DIM, class SIM, unsigned SPACE_DIM>
90SIM* CellBasedSimulationArchiver<ELEMENT_DIM, SIM, SPACE_DIM>::Load(const std::string& rArchiveDirectory, const double& rTimeStamp)
91{
100 std::ostringstream time_stamp;
101 time_stamp << rTimeStamp;
102 std::string archive_filename = "cell_population_sim_at_time_" + time_stamp.str() + ".arch";
103 std::string mesh_filename = "mesh_" + time_stamp.str();
104 FileFinder archive_dir(rArchiveDirectory + "/archive/", RelativeTo::ChasteTestOutput);
105 ArchiveLocationInfo::SetMeshPathname(archive_dir, mesh_filename);
106
107 // Create an input archive
108 ArchiveOpener<boost::archive::text_iarchive, std::ifstream> arch_opener(archive_dir, archive_filename);
109 boost::archive::text_iarchive* p_arch = arch_opener.GetCommonArchive();
110
111 // Load the simulation
112 SIM* p_sim;
113 (*p_arch) >> p_sim;
114 return p_sim;
115}
116
117template<unsigned ELEMENT_DIM, class SIM, unsigned SPACE_DIM>
119{
120 // Get the simulation time as a string
121 const SimulationTime* p_sim_time = SimulationTime::Instance();
122 assert(p_sim_time->IsStartTimeSetUp());
123 std::ostringstream time_stamp;
124 time_stamp << p_sim_time->GetTime();
125
126 // Set up folder and filename of archive
127 FileFinder archive_dir(pSim->GetOutputDirectory() + "/archive/", RelativeTo::ChasteTestOutput);
128 std::string archive_filename = "cell_population_sim_at_time_" + time_stamp.str() + ".arch";
129 ArchiveLocationInfo::SetMeshFilename(std::string("mesh_") + time_stamp.str());
130
131 // Create output archive
132 ArchiveOpener<boost::archive::text_oarchive, std::ofstream> arch_opener(archive_dir, archive_filename);
133 boost::archive::text_oarchive* p_arch = arch_opener.GetCommonArchive();
134
135 // Archive the simulation (const-ness would be a pain here)
136 (*p_arch) & pSim;
137}
138
139#endif /*CELLBASEDSIMULATIONARCHIVER_HPP_*/
static void SetMeshFilename(const std::string &rFilename)
static void SetMeshPathname(const FileFinder &rDirectory, const std::string &rFilename)
Archive * GetCommonArchive()
static SIM * Load(const std::string &rArchiveDirectory, const double &rTimeStamp)
bool IsStartTimeSetUp() const
double GetTime() const
static SimulationTime * Instance()