Chaste
Commit::1fd4e48e3990e67db148bc1bc4cf6991a0049d0c
CellProliferativeTypesCountWriter.cpp
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/*
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Copyright (c) 2005-2024, University of Oxford.
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All rights reserved.
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University of Oxford means the Chancellor, Masters and Scholars of the
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University of Oxford, having an administrative office at Wellington
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Square, Oxford OX1 2JD, UK.
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This file is part of Chaste.
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice,
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this list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of the University of Oxford nor the names of its
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contributors may be used to endorse or promote products derived from this
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software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
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GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
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HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
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OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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*/
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#include "CellProliferativeTypesCountWriter.hpp"
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#include "AbstractCellPopulation.hpp"
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#include "MeshBasedCellPopulation.hpp"
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#include "CaBasedCellPopulation.hpp"
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#include "NodeBasedCellPopulation.hpp"
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#include "PottsBasedCellPopulation.hpp"
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#include "VertexBasedCellPopulation.hpp"
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#include "ImmersedBoundaryCellPopulation.hpp"
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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CellProliferativeTypesCountWriter<ELEMENT_DIM, SPACE_DIM>::CellProliferativeTypesCountWriter
()
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:
AbstractCellPopulationCountWriter
<ELEMENT_DIM, SPACE_DIM>(
"celltypes.dat"
)
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{
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
CellProliferativeTypesCountWriter<ELEMENT_DIM, SPACE_DIM>::VisitAnyPopulation
(
AbstractCellPopulation<SPACE_DIM, SPACE_DIM>
* pCellPopulation)
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{
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std::vector<unsigned> proliferative_type_count = pCellPopulation->
GetCellProliferativeTypeCount
();
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if
(
PetscTools::AmMaster
())
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{
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for
(
unsigned
i=0; i<proliferative_type_count.size(); i++)
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{
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*this->mpOutStream << proliferative_type_count[i] <<
"\t"
;
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}
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}
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
CellProliferativeTypesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
MeshBasedCellPopulation<ELEMENT_DIM, SPACE_DIM>
* pCellPopulation)
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{
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std::vector<unsigned> proliferative_type_count = pCellPopulation->
GetCellProliferativeTypeCount
();
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if
(
PetscTools::AmMaster
())
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{
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for
(
unsigned
i=0; i<proliferative_type_count.size(); i++)
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{
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*this->mpOutStream << proliferative_type_count[i] <<
"\t"
;
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}
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}
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
CellProliferativeTypesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
CaBasedCellPopulation<SPACE_DIM>
* pCellPopulation)
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{
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VisitAnyPopulation(pCellPopulation);
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
CellProliferativeTypesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
NodeBasedCellPopulation<SPACE_DIM>
* pCellPopulation)
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{
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VisitAnyPopulation(pCellPopulation);
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
CellProliferativeTypesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
PottsBasedCellPopulation<SPACE_DIM>
* pCellPopulation)
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{
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VisitAnyPopulation(pCellPopulation);
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
CellProliferativeTypesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
VertexBasedCellPopulation<SPACE_DIM>
* pCellPopulation)
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{
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VisitAnyPopulation(pCellPopulation);
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
CellProliferativeTypesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
ImmersedBoundaryCellPopulation<SPACE_DIM>
* pCellPopulation)
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{
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VisitAnyPopulation(pCellPopulation);
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}
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// Explicit instantiation
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template
class
CellProliferativeTypesCountWriter<1,1>
;
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template
class
CellProliferativeTypesCountWriter<1,2>
;
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template
class
CellProliferativeTypesCountWriter<2,2>
;
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template
class
CellProliferativeTypesCountWriter<1,3>
;
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template
class
CellProliferativeTypesCountWriter<2,3>
;
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template
class
CellProliferativeTypesCountWriter<3,3>
;
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#include "
SerializationExportWrapperForCpp.hpp
"
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// Declare identifier for the serializer
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EXPORT_TEMPLATE_CLASS_ALL_DIMS
(
CellProliferativeTypesCountWriter
)
SerializationExportWrapperForCpp.hpp
EXPORT_TEMPLATE_CLASS_ALL_DIMS
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
Definition
SerializationExportWrapper.hpp:358
AbstractCellPopulationCountWriter
Definition
AbstractCellPopulationCountWriter.hpp:63
AbstractCellPopulation
Definition
AbstractCellPopulation.hpp:83
AbstractCellPopulation::GetCellProliferativeTypeCount
std::vector< unsigned > GetCellProliferativeTypeCount()
Definition
AbstractCellPopulation.cpp:230
CaBasedCellPopulation
Definition
CaBasedCellPopulation.hpp:65
CellProliferativeTypesCountWriter
Definition
CellProliferativeTypesCountWriter.hpp:50
CellProliferativeTypesCountWriter::VisitAnyPopulation
void VisitAnyPopulation(AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation)
Definition
CellProliferativeTypesCountWriter.cpp:52
CellProliferativeTypesCountWriter::Visit
virtual void Visit(MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
Definition
CellProliferativeTypesCountWriter.cpp:66
CellProliferativeTypesCountWriter::CellProliferativeTypesCountWriter
CellProliferativeTypesCountWriter()
Definition
CellProliferativeTypesCountWriter.cpp:46
ImmersedBoundaryCellPopulation
Definition
ImmersedBoundaryCellPopulation.hpp:58
MeshBasedCellPopulation
Definition
MeshBasedCellPopulation.hpp:65
NodeBasedCellPopulation
Definition
NodeBasedCellPopulation.hpp:53
PetscTools::AmMaster
static bool AmMaster()
Definition
PetscTools.cpp:120
PottsBasedCellPopulation
Definition
PottsBasedCellPopulation.hpp:61
VertexBasedCellPopulation
Definition
VertexBasedCellPopulation.hpp:63
cell_based
src
writers
population_count_writers
CellProliferativeTypesCountWriter.cpp
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