Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
CellSrnModel.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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15 this list of conditions and the following disclaimer.
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34*/
35
36#ifndef CELLSRNMODEL_HPP_
37#define CELLSRNMODEL_HPP_
38
39#include <vector>
41#include "ClassIsAbstract.hpp"
42#include <boost/serialization/base_object.hpp>
43#include <boost/serialization/vector.hpp>
44#include "AbstractSrnModel.hpp"
45#include "CellCycleModelOdeHandler.hpp"
46#include "SimulationTime.hpp"
47
48typedef boost::shared_ptr<AbstractSrnModel> AbstractSrnModelPtr;
49
57{
58
59private:
60
69 template<class Archive>
70 void serialize(Archive & archive, const unsigned int version)
71 {
72 archive & boost::serialization::base_object<AbstractSrnModel>(*this);
73 archive & mEdgeSrnModels;
74 archive & mpInteriorSrnModel;
75 }
76
78 std::vector<boost::shared_ptr<AbstractSrnModel>> mEdgeSrnModels;
79
84 using abstractsrnmodel_t = std::vector<AbstractSrnModelPtr>;
85
87 boost::shared_ptr<AbstractSrnModel> mpInteriorSrnModel;
88
89protected:
90
95 CellSrnModel(const CellSrnModel &rModel);
96
97public:
98
103 using iterator = abstractsrnmodel_t::iterator;
104
109 using const_iterator = abstractsrnmodel_t::const_iterator;
110
115 iterator begin() { return mEdgeSrnModels.begin(); }
116
121 iterator end() { return mEdgeSrnModels.end(); }
122
127 const_iterator begin() const { return mEdgeSrnModels.begin(); }
128
133 const_iterator end() const { return mEdgeSrnModels.end(); }
134
139 const_iterator cbegin() const { return mEdgeSrnModels.cbegin(); }
140
145 const_iterator cend() const { return mEdgeSrnModels.cend(); }
146
150 CellSrnModel();
151
156
160 virtual void Initialise();
161
167 virtual void ResetForDivision();
168
172 virtual void SimulateToCurrentTime();
173
179
185 void AddEdgeSrn(std::vector<AbstractSrnModelPtr> edgeSrns);
186
192 void AddEdgeSrnModel(AbstractSrnModelPtr pEdgeSrn);
193
199 unsigned GetNumEdgeSrn() const;
200
207 AbstractSrnModelPtr GetEdgeSrn(unsigned index) const;
208
214 const std::vector<AbstractSrnModelPtr>& GetEdges() const;
215
221 void SetInteriorSrnModel(AbstractSrnModelPtr pInteriorSrn);
222
228 AbstractSrnModelPtr GetInteriorSrn() const;
229
235 virtual void SetCell(CellPtr pCell);
236};
237
238// Declare identifier for the serializer
241
242#endif /* CELLSRNMODEL_HPP_ */
gcov doesn't like this file...
#define CHASTE_CLASS_EXPORT(T)
void AddEdgeSrn(std::vector< AbstractSrnModelPtr > edgeSrns)
unsigned GetNumEdgeSrn() const
abstractsrnmodel_t::const_iterator const_iterator
AbstractSrnModelPtr GetEdgeSrn(unsigned index) const
virtual void Initialise()
virtual AbstractSrnModel * CreateSrnModel()
virtual void SetCell(CellPtr pCell)
virtual void ResetForDivision()
const std::vector< AbstractSrnModelPtr > & GetEdges() const
const_iterator end() const
const_iterator begin() const
iterator end()
std::vector< boost::shared_ptr< AbstractSrnModel > > mEdgeSrnModels
abstractsrnmodel_t::iterator iterator
const_iterator cend() const
friend class boost::serialization::access
void AddEdgeSrnModel(AbstractSrnModelPtr pEdgeSrn)
void serialize(Archive &archive, const unsigned int version)
void SetInteriorSrnModel(AbstractSrnModelPtr pInteriorSrn)
iterator begin()
std::vector< AbstractSrnModelPtr > abstractsrnmodel_t
boost::shared_ptr< AbstractSrnModel > mpInteriorSrnModel
AbstractSrnModelPtr GetInteriorSrn() const
virtual void SimulateToCurrentTime()
const_iterator cbegin() const