Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
CellwiseSourceEllipticPde.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
5
6University of Oxford means the Chancellor, Masters and Scholars of the
7University of Oxford, having an administrative office at Wellington
8Square, Oxford OX1 2JD, UK.
9
10This file is part of Chaste.
11
12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
17 this list of conditions and the following disclaimer in the documentation
18 and/or other materials provided with the distribution.
19 * Neither the name of the University of Oxford nor the names of its
20 contributors may be used to endorse or promote products derived from this
21 software without specific prior written permission.
22
23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
26ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
27LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
28CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
29GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
30HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
31LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
32OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33
34*/
35
36#ifndef CELLWISESOURCEELLIPTICPDE_HPP_
37#define CELLWISESOURCEELLIPTICPDE_HPP_
38
40#include <boost/serialization/base_object.hpp>
41
42#include "AbstractCellPopulation.hpp"
43#include "AbstractLinearEllipticPde.hpp"
44
63template<unsigned DIM>
65{
66 friend class TestCellBasedEllipticPdes;
67
68private:
69
78 template<class Archive>
79 void serialize(Archive & archive, const unsigned int version)
80 {
81 archive & boost::serialization::base_object<AbstractLinearEllipticPde<DIM, DIM> >(*this);
82 archive & mSourceCoefficient;
83 }
84
85protected:
86
89
92
93public:
94
101 CellwiseSourceEllipticPde(AbstractCellPopulation<DIM, DIM>& rCellPopulation, double sourceCoefficient=0.0);
102
107
111 double GetCoefficient() const;
112
122 virtual double ComputeConstantInUSourceTerm(const ChastePoint<DIM>& rX, Element<DIM,DIM>* pElement);
123
133 virtual double ComputeLinearInUCoeffInSourceTerm(const ChastePoint<DIM>& rX, Element<DIM,DIM>* pElement);
134
142 virtual double ComputeLinearInUCoeffInSourceTermAtNode(const Node<DIM>& rNode);
143
151 virtual c_matrix<double,DIM,DIM> ComputeDiffusionTerm(const ChastePoint<DIM>& rX);
152};
153
156
157namespace boost
158{
159namespace serialization
160{
164template<class Archive, unsigned DIM>
165inline void save_construct_data(
166 Archive & ar, const CellwiseSourceEllipticPde<DIM>* t, const unsigned int file_version)
167{
168 // Save data required to construct instance
169 const AbstractCellPopulation<DIM, DIM>* p_cell_population = &(t->rGetCellPopulation());
170 ar & p_cell_population;
171}
172
176template<class Archive, unsigned DIM>
177inline void load_construct_data(
178 Archive & ar, CellwiseSourceEllipticPde<DIM>* t, const unsigned int file_version)
179{
180 // Retrieve data from archive required to construct new instance
181 AbstractCellPopulation<DIM, DIM>* p_cell_population;
182 ar >> p_cell_population;
183
184 // Invoke inplace constructor to initialise instance
185 ::new(t)CellwiseSourceEllipticPde<DIM>(*p_cell_population);
186}
187}
188} // namespace ...
189
190#endif /*CELLWISESOURCEELLIPTICPDE_HPP_*/
gcov doesn't like this file...
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
virtual double ComputeConstantInUSourceTerm(const ChastePoint< DIM > &rX, Element< DIM, DIM > *pElement)
AbstractCellPopulation< DIM, DIM > & mrCellPopulation
virtual c_matrix< double, DIM, DIM > ComputeDiffusionTerm(const ChastePoint< DIM > &rX)
virtual double ComputeLinearInUCoeffInSourceTerm(const ChastePoint< DIM > &rX, Element< DIM, DIM > *pElement)
virtual double ComputeLinearInUCoeffInSourceTermAtNode(const Node< DIM > &rNode)
friend class boost::serialization::access
const AbstractCellPopulation< DIM > & rGetCellPopulation() const
void serialize(Archive &archive, const unsigned int version)
Definition Node.hpp:59