Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
ColumnDataReader.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
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15 this list of conditions and the following disclaimer.
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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34*/
35
36#ifndef _COLUMNDATAREADER_HPP_
37#define _COLUMNDATAREADER_HPP_
38
39#include "AbstractDataReader.hpp"
40
41#include <string>
42#include <vector>
43#include <map>
44
45#include "FileFinder.hpp"
46
51{
52private:
53
54 std::map<std::string, int> mVariablesToColumns;
55 std::map<std::string, std::string> mVariablesToUnits;
59 std::string mInfoFilename;
60 std::string mDataFilename;
61 std::string mAncillaryFilename;
62 std::vector<double> mValues;
63 unsigned mFieldWidth;
70 void PushColumnEntryFromLine(const std::string& rLine, int col);
71
78 void ReadColumnFromFile(const std::string& rFilename, int col);
79
87 void ReadValueFromFile(const std::string& rFilename, int col, int row);
88
96 void CheckFiles(const std::string& rDirectory, const std::string& rBaseName);
97
98public:
99
117 ColumnDataReader(const std::string& rDirectory,
118 const std::string& rBaseName,
119 bool makeAbsolute=true);
120
128 ColumnDataReader(const FileFinder& rDirectory,
129 const std::string& rBaseName);
130
136 std::vector<double> GetValues(const std::string& rVariableName);
137
144 std::vector<double> GetValues(const std::string& rVariableName, int fixedDimension);
145
149 std::vector<double> GetUnlimitedDimensionValues();
150
156 bool HasValues(const std::string& rVariableName);
157
161 unsigned GetFieldWidth();
162};
163
164#endif //_COLUMNDATAREADER_HPP_
std::string mInfoFilename
std::string mAncillaryFilename
void ReadColumnFromFile(const std::string &rFilename, int col)
void CheckFiles(const std::string &rDirectory, const std::string &rBaseName)
bool HasValues(const std::string &rVariableName)
std::string mDataFilename
void ReadValueFromFile(const std::string &rFilename, int col, int row)
void PushColumnEntryFromLine(const std::string &rLine, int col)
std::map< std::string, std::string > mVariablesToUnits
std::map< std::string, int > mVariablesToColumns
std::vector< double > GetUnlimitedDimensionValues()
std::vector< double > GetValues(const std::string &rVariableName)
std::vector< double > mValues