Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
CryptSimulation1d.hpp
1/*
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34*/
35
36#ifndef CRYPTSIMULATION1D_HPP_
37#define CRYPTSIMULATION1D_HPP_
38
40#include <boost/serialization/base_object.hpp>
41
42#include <cmath>
43#include <iostream>
44
45#include "WntConcentration.hpp"
46#include "CryptSimulationBoundaryCondition.hpp"
47#include "OffLatticeSimulation.hpp"
48#include "MeshBasedCellPopulation.hpp"
49#include "CryptCentreBasedDivisionRule.hpp"
50
56{
57 // Allow tests to access private members to test private functions
58 friend class TestCryptSimulation1d;
59
60private:
61
70 template<class Archive>
71 void serialize(Archive & archive, const unsigned int version)
72 {
73 archive & boost::serialization::base_object<OffLatticeSimulation<1> >(*this);
74
76 archive & p_wnt_wrapper;
77 }
78
81
82public:
83
93 bool deleteCellPopulationInDestructor=false,
94 bool initialiseCells=true);
95
101 virtual ~CryptSimulation1d();
102
111 void OutputSimulationParameters(out_stream& rParamsFile);
112};
113
114// Declare identifier for the serializer
117
118namespace boost
119{
120namespace serialization
121{
125template<class Archive>
126inline void save_construct_data(
127 Archive & ar, const CryptSimulation1d * t, const unsigned int file_version)
128{
129 // Save data required to construct instance
130 const AbstractCellPopulation<1>* p_cell_population = &(t->rGetCellPopulation());
131 ar & p_cell_population;
132}
133
137template<class Archive>
138inline void load_construct_data(
139 Archive & ar, CryptSimulation1d * t, const unsigned int file_version)
140{
141 // Retrieve data from archive required to construct new instance
142 AbstractCellPopulation<1>* p_cell_population;
143 ar & p_cell_population;
144
145 // Invoke inplace constructor to initialise instance, last two variables set extra
146 // member variables to be deleted as they are loaded from archive and to not initialise sells.
147 ::new(t)CryptSimulation1d(*p_cell_population, true, false);
148}
149}
150} // namespace
151
152#endif /*CRYPTSIMULATION1D_HPP_*/
gcov doesn't like this file...
#define CHASTE_CLASS_EXPORT(T)
void serialize(Archive &archive, const unsigned int version)
MeshBasedCellPopulation< 1 > * mpStaticCastCellPopulation
friend class boost::serialization::access
void OutputSimulationParameters(out_stream &rParamsFile)
SerializableSingleton< SINGLETON_CLASS > * GetSerializationWrapper() const
static WntConcentration * Instance()