Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
Cylindrical2dNodesOnlyMesh.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
5
6University of Oxford means the Chancellor, Masters and Scholars of the
7University of Oxford, having an administrative office at Wellington
8Square, Oxford OX1 2JD, UK.
9
10This file is part of Chaste.
11
12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
17 this list of conditions and the following disclaimer in the documentation
18 and/or other materials provided with the distribution.
19 * Neither the name of the University of Oxford nor the names of its
20 contributors may be used to endorse or promote products derived from this
21 software without specific prior written permission.
22
23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
26ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
27LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
28CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
29GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
30HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
31LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
32OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33
34*/
35
36#ifndef CYLINDRICAL2DNODESONLYMESH_HPP_
37#define CYLINDRICAL2DNODESONLYMESH_HPP_
38
40#include <boost/serialization/base_object.hpp>
41
42#include "NodesOnlyMesh.hpp"
43
53{
54private:
58 double mWidth;
59
60 friend class TestCylindrical2dNodesOnlyMesh;
61
75 template<class Archive>
76 void serialize(Archive & archive, const unsigned int version)
77 {
78 archive & boost::serialization::base_object<NodesOnlyMesh<2> >(*this);
79 archive & mWidth;
80 }
81
82public:
83
89 Cylindrical2dNodesOnlyMesh(double width);
90
99 virtual void SetUpBoxCollection(double cutOffLength, c_vector<double, 2*2> domainSize, int numLocalRows = PETSC_DECIDE, c_vector<bool,2> isDimPeriodic = unit_vector<bool>(2,0));
100
111 c_vector<double, 2> GetVectorFromAtoB(const c_vector<double, 2>& rLocation1, const c_vector<double, 2>& rLocation2);
112
122 double GetWidth(const unsigned& rDimension) const;
123
134 void SetNode(unsigned nodeIndex, ChastePoint<2> point, bool concreteMove = false);
135
142 unsigned AddNode(Node<2>* pNewNode);
143
150 void RefreshMesh();
151};
152
153namespace boost
154{
155namespace serialization
156{
160template<class Archive>
161inline void save_construct_data(
162 Archive & ar, const Cylindrical2dNodesOnlyMesh * t, const unsigned int file_version)
163{
164 // Save data required to construct instance
165 const double width = t->GetWidth(0);
166 ar & width;
167}
168
172template<class Archive>
173inline void load_construct_data(
174 Archive & ar, Cylindrical2dNodesOnlyMesh * t, const unsigned int file_version)
175{
176 // Retrieve data from archive required to construct new instance
177 double width;
178 ar & width;
179
180 // Invoke inplace constructor to initialise instance
181 ::new(t)Cylindrical2dNodesOnlyMesh(width);
182}
183}
184} // namespace ...
185
188
189#endif /*CYLINDRICAL2DNODESONLYMESH_HPP_*/
gcov doesn't like this file...
#define CHASTE_CLASS_EXPORT(T)
double GetWidth(const unsigned &rDimension) const
unsigned AddNode(Node< 2 > *pNewNode)
virtual void SetUpBoxCollection(double cutOffLength, c_vector< double, 2 *2 > domainSize, int numLocalRows=PETSC_DECIDE, c_vector< bool, 2 > isDimPeriodic=unit_vector< bool >(2, 0))
void serialize(Archive &archive, const unsigned int version)
void SetNode(unsigned nodeIndex, ChastePoint< 2 > point, bool concreteMove=false)
c_vector< double, 2 > GetVectorFromAtoB(const c_vector< double, 2 > &rLocation1, const c_vector< double, 2 > &rLocation2)
friend class boost::serialization::access
Definition Node.hpp:59