Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
FibreReader.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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34*/
35
36#ifndef FIBREREADER_HPP_
37#define FIBREREADER_HPP_
38
39#include <string>
40#include <fstream>
41#include <vector>
42
43#include "UblasIncludes.hpp"
44#include "FileFinder.hpp"
45
49typedef enum FibreFileType_
50{
51 AXISYM=0,
52 ORTHO
53} FibreFileType;
54
60template<unsigned DIM>
62{
63private:
65 std::ifstream mDataFile;
66
68 std::string mFilePath;
69
72
77
79 unsigned mNextIndex;
80
82 std::vector<double> mTokens;
83
89 unsigned GetTokensAtNextLine();
90
97
98public:
105 FibreReader(const FileFinder& rFileFinder, FibreFileType fibreFileType);
106
110 ~FibreReader();
111
112
133 void GetFibreSheetAndNormalMatrix(unsigned fibreIndex, c_matrix<double,DIM,DIM>& rFibreMatrix, bool checkOrthogonality=true);
134
149 void GetFibreVector(unsigned fibreIndex, c_vector<double,DIM>& rFibreVector, bool checkNormalised=true);
150
156 {
157 return mNumLinesOfData;
158 }
159
167 void GetAllAxi(std::vector< c_vector<double, DIM> >& direction);
168
178 void GetAllOrtho(std::vector< c_vector<double, DIM> >& first_direction,
179 std::vector< c_vector<double, DIM> >& second_direction,
180 std::vector< c_vector<double, DIM> >& third_direction);
181
185 bool IsBinary()
186 {
187 return mFileIsBinary;
188 }
189};
190
191#endif /*FIBREREADER_HPP_*/
std::vector< double > mTokens
unsigned mNextIndex
void GetFibreVector(unsigned fibreIndex, c_vector< double, DIM > &rFibreVector, bool checkNormalised=true)
unsigned GetTokensAtNextLine()
unsigned mNumLinesOfData
void GetAllAxi(std::vector< c_vector< double, DIM > > &direction)
std::string mFilePath
unsigned mNumItemsPerLine
void GetAllOrtho(std::vector< c_vector< double, DIM > > &first_direction, std::vector< c_vector< double, DIM > > &second_direction, std::vector< c_vector< double, DIM > > &third_direction)
void GetFibreSheetAndNormalMatrix(unsigned fibreIndex, c_matrix< double, DIM, DIM > &rFibreMatrix, bool checkOrthogonality=true)
unsigned GetNumLinesOfData()
void ReadNumLinesOfDataFromFile()
std::ifstream mDataFile