Chaste
Commit::baa90ac2819b962188b7562f2326be23c47859a7
NodeBasedCellPopulationWithBuskeUpdate.hpp
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/*
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Copyright (c) 2005-2024, University of Oxford.
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All rights reserved.
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University of Oxford means the Chancellor, Masters and Scholars of the
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University of Oxford, having an administrative office at Wellington
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Square, Oxford OX1 2JD, UK.
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This file is part of Chaste.
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice,
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this list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of the University of Oxford nor the names of its
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contributors may be used to endorse or promote products derived from this
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software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
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GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
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HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
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OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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*/
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#ifndef NODEBASEDCELLPOPULATIONWITHBUSKEUPDATE_HPP_
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#define NODEBASEDCELLPOPULATIONWITHBUSKEUPDATE_HPP_
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#include "NodeBasedCellPopulation.hpp"
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#include "
ChasteSerialization.hpp
"
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#include <boost/serialization/base_object.hpp>
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template
<
unsigned
DIM>
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class
NodeBasedCellPopulationWithBuskeUpdate
:
public
NodeBasedCellPopulation
<DIM>
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{
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friend
class
TestNodeBasedCellPopulationWithBuskeUpdate;
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private
:
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friend
class
boost::serialization::access
;
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template
<
class
Archive>
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void
serialize
(Archive & archive,
const
unsigned
int
version)
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{
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archive & boost::serialization::base_object<NodeBasedCellPopulation<DIM> >(*this);
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}
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public
:
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NodeBasedCellPopulationWithBuskeUpdate
(
NodesOnlyMesh<DIM>
& rMesh,
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std::vector<CellPtr>& rCells,
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const
std::vector<unsigned> locationIndices=std::vector<unsigned>(),
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bool
deleteMesh=
false
);
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NodeBasedCellPopulationWithBuskeUpdate
(
NodesOnlyMesh<DIM>
& rMesh);
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virtual
void
UpdateNodeLocations
(
double
dt);
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void
OutputCellPopulationParameters
(out_stream& rParamsFile);
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};
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#include "
SerializationExportWrapper.hpp
"
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EXPORT_TEMPLATE_CLASS_SAME_DIMS
(
NodeBasedCellPopulationWithBuskeUpdate
)
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namespace
boost
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{
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namespace
serialization
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{
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template
<
class
Archive,
unsigned
DIM>
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inline
void
save_construct_data(
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Archive & ar,
const
NodeBasedCellPopulationWithBuskeUpdate<DIM>
* t,
const
unsigned
int
file_version)
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{
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// Save data required to construct instance
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const
NodesOnlyMesh<DIM>
* p_mesh = &(t->rGetMesh());
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ar & p_mesh;
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}
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template
<
class
Archive,
unsigned
DIM>
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inline
void
load_construct_data(
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Archive & ar,
NodeBasedCellPopulationWithBuskeUpdate<DIM>
* t,
const
unsigned
int
file_version)
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{
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// Retrieve data from archive required to construct new instance
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NodesOnlyMesh<DIM>
* p_mesh;
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ar >> p_mesh;
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// Invoke inplace constructor to initialise instance
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::new(t)
NodeBasedCellPopulationWithBuskeUpdate<DIM>
(*p_mesh);
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}
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}
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}
// namespace ...
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#endif
/*NODEBASEDCELLPOPULATIONWITHBUSKEUPDATE_HPP_*/
ChasteSerialization.hpp
SerializationExportWrapper.hpp
gcov doesn't like this file...
EXPORT_TEMPLATE_CLASS_SAME_DIMS
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
Definition
SerializationExportWrapper.hpp:352
NodeBasedCellPopulationWithBuskeUpdate
Definition
NodeBasedCellPopulationWithBuskeUpdate.hpp:51
NodeBasedCellPopulationWithBuskeUpdate::UpdateNodeLocations
virtual void UpdateNodeLocations(double dt)
Definition
NodeBasedCellPopulationWithBuskeUpdate.cpp:57
NodeBasedCellPopulationWithBuskeUpdate::OutputCellPopulationParameters
void OutputCellPopulationParameters(out_stream &rParamsFile)
Definition
NodeBasedCellPopulationWithBuskeUpdate.cpp:202
NodeBasedCellPopulationWithBuskeUpdate::access
friend class boost::serialization::access
Definition
NodeBasedCellPopulationWithBuskeUpdate.hpp:57
NodeBasedCellPopulationWithBuskeUpdate::serialize
void serialize(Archive &archive, const unsigned int version)
Definition
NodeBasedCellPopulationWithBuskeUpdate.hpp:68
NodeBasedCellPopulation
Definition
NodeBasedCellPopulation.hpp:53
NodesOnlyMesh
Definition
NodesOnlyMesh.hpp:53
cell_based
src
population
NodeBasedCellPopulationWithBuskeUpdate.hpp
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