Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
NodeLocationWriter.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
5
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7University of Oxford, having an administrative office at Wellington
8Square, Oxford OX1 2JD, UK.
9
10This file is part of Chaste.
11
12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
17 this list of conditions and the following disclaimer in the documentation
18 and/or other materials provided with the distribution.
19 * Neither the name of the University of Oxford nor the names of its
20 contributors may be used to endorse or promote products derived from this
21 software without specific prior written permission.
22
23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
26ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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30HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
31LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
32OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33
34*/
35
36#include "NodeLocationWriter.hpp"
37#include "AbstractCellPopulation.hpp"
38#include "MeshBasedCellPopulation.hpp"
39#include "CaBasedCellPopulation.hpp"
40#include "NodeBasedCellPopulation.hpp"
41#include "PottsBasedCellPopulation.hpp"
42#include "VertexBasedCellPopulation.hpp"
43#include "ImmersedBoundaryCellPopulation.hpp"
44
45template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
50
51template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
53{
54 for (typename AbstractMesh<SPACE_DIM, SPACE_DIM>::NodeIterator node_iter = pCellPopulation->rGetMesh().GetNodeIteratorBegin();
55 node_iter != pCellPopulation->rGetMesh().GetNodeIteratorEnd();
56 ++node_iter)
57 {
58 if (!node_iter->IsDeleted())
59 {
60 const c_vector<double,SPACE_DIM>& position = node_iter->rGetLocation();
61
62 for (unsigned i=0; i<SPACE_DIM; i++)
63 {
64 *this->mpOutStream << position[i] << " ";
65 }
66 }
67 }
68}
69
70template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
72{
73 for (typename AbstractMesh<ELEMENT_DIM, SPACE_DIM>::NodeIterator node_iter = pCellPopulation->rGetMesh().GetNodeIteratorBegin();
74 node_iter != pCellPopulation->rGetMesh().GetNodeIteratorEnd();
75 ++node_iter)
76 {
77 if (!node_iter->IsDeleted())
78 {
79 const c_vector<double,SPACE_DIM>& position = node_iter->rGetLocation();
80
81 for (unsigned i=0; i<SPACE_DIM; i++)
82 {
83 *this->mpOutStream << position[i] << " ";
84 }
85 }
86 }
87}
88
89template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
91{
92 VisitAnyPopulation(pCellPopulation);
93}
94
95template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
97{
98 VisitAnyPopulation(pCellPopulation);
99}
100
101template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
103{
104 VisitAnyPopulation(pCellPopulation);
105}
106
107template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
109{
110 VisitAnyPopulation(pCellPopulation);
111}
112
113template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
115{
116 VisitAnyPopulation(pCellPopulation);
117}
118
119// Explicit instantiation
120template class NodeLocationWriter<1,1>;
121template class NodeLocationWriter<1,2>;
122template class NodeLocationWriter<2,2>;
123template class NodeLocationWriter<1,3>;
124template class NodeLocationWriter<2,3>;
125template class NodeLocationWriter<3,3>;
126
128// Declare identifier for the serializer
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
AbstractMesh< ELEMENT_DIM, SPACE_DIM > & rGetMesh()
MutableMesh< ELEMENT_DIM, SPACE_DIM > & rGetMesh()
void VisitAnyPopulation(AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation)
virtual void Visit(MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)