Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
ParabolicGrowingDomainPdeModifier.hpp
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34*/
35
36#ifndef PARABOLICGROWINGDOMAINPDEMODIFIER_HPP_
37#define PARABOLICGROWINGDOMAINPDEMODIFIER_HPP_
38
40#include <boost/serialization/base_object.hpp>
41
42#include "AbstractGrowingDomainPdeModifier.hpp"
43#include "BoundaryConditionsContainer.hpp"
44
60template<unsigned DIM>
62{
63 friend class TestParabolicGrowingDomainPdeModifier;
64
65private:
66
76 template<class Archive>
77 void serialize(Archive & archive, const unsigned int version)
78 {
79 archive & boost::serialization::base_object<AbstractGrowingDomainPdeModifier<DIM> >(*this);
80 }
81
82public:
83
94 boost::shared_ptr<AbstractBoundaryCondition<DIM> > pBoundaryCondition=boost::shared_ptr<AbstractBoundaryCondition<DIM> >(),
95 bool isNeumannBoundaryCondition=true,
96 Vec solution=nullptr);
97
102
110 virtual void UpdateAtEndOfTimeStep(AbstractCellPopulation<DIM,DIM>& rCellPopulation);
111
120 virtual void SetupSolve(AbstractCellPopulation<DIM,DIM>& rCellPopulation, std::string outputDirectory);
121
127 virtual std::shared_ptr<BoundaryConditionsContainer<DIM,DIM,1> > ConstructBoundaryConditionsContainer();
128
135
142 void OutputSimulationModifierParameters(out_stream& rParamsFile);
143};
144
147
148namespace boost
149{
150namespace serialization
151{
152template<class Archive, unsigned DIM>
153inline void save_construct_data(
154 Archive & ar, const ParabolicGrowingDomainPdeModifier<DIM> * t, const unsigned int file_version)
155{
156 if (t->GetSolution())
157 {
158 std::string archive_filename = ArchiveLocationInfo::GetArchiveDirectory() + "solution.vec";
159 PetscTools::DumpPetscObject(t->GetSolution(), archive_filename);
160 }
161}
162
163template<class Archive, unsigned DIM>
164inline void load_construct_data(
165 Archive & ar, ParabolicGrowingDomainPdeModifier<DIM> * t, const unsigned int file_version)
166{
167 Vec solution = nullptr;
168
169 std::string archive_filename = ArchiveLocationInfo::GetArchiveDirectory() + "solution.vec";
170 FileFinder file_finder(archive_filename, RelativeTo::Absolute);
171
172 if (file_finder.Exists())
173 {
174 PetscTools::ReadPetscObject(solution, archive_filename);
175 }
176
178 boost::shared_ptr<AbstractBoundaryCondition<DIM> >(),
179 true,
180 solution);
181}
182}
183} // namespace ...
184
185#endif /*PARABOLICGROWINGDOMAINPDEMODIFIER_HPP_*/
gcov doesn't like this file...
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
static std::string GetArchiveDirectory()
virtual void SetupSolve(AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory)
virtual std::shared_ptr< BoundaryConditionsContainer< DIM, DIM, 1 > > ConstructBoundaryConditionsContainer()
void serialize(Archive &archive, const unsigned int version)
void OutputSimulationModifierParameters(out_stream &rParamsFile)
virtual void UpdateAtEndOfTimeStep(AbstractCellPopulation< DIM, DIM > &rCellPopulation)
void UpdateSolutionVector(AbstractCellPopulation< DIM, DIM > &rCellPopulation)
static void DumpPetscObject(const Mat &rMat, const std::string &rOutputFileFullPath)
static void ReadPetscObject(Mat &rMat, const std::string &rOutputFileFullPath, Vec rParallelLayout=nullptr)