Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
PostProcessingWriter.hpp
1/*
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34*/
35
36#ifndef POSTPROCESSINGWRITER_HPP_
37#define POSTPROCESSINGWRITER_HPP_
38
39
40#include "Hdf5DataReader.hpp"
41#include "PropagationPropertiesCalculator.hpp"
42#include "AbstractTetrahedralMesh.hpp"
43#include <string>
44
56template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
58{
59 friend class TestPostProcessingWriter;
60
61private:
63 std::string mHdf5File;
64 std::string mVoltageName;
68 unsigned mLo;
69 unsigned mHi;
73public:
85 const FileFinder& rDirectory,
86 const std::string& rHdf5FileName,
87 const std::string& rVoltageName = "V",
88 hsize_t hdf5DataWriterChunkSize=0);
89
95
100
116 void WriteAboveThresholdDepolarisationFile(double threshold);
117
118private:
119
145 void WriteVariablesOverTimeAtNodes(std::vector<unsigned>& rNodeIndices);
146
159 void WriteApdMapFile(double repolarisationPercentage, double threshold);
160
161
173 void WriteUpstrokeTimeMap(double threshold);
174
186 void WriteMaxUpstrokeVelocityMap(double threshold);
187
200 void WriteConductionVelocityMap(unsigned originNode, std::vector<double> distancesFromOriginNode);
201
211 void WriteGenericFileToMeshalyzer(std::vector<std::vector<double> >& rDataPayload, const std::string& rFolder, const std::string& rFileName);
212
222 void WriteOutputDataToHdf5(const std::vector<std::vector<double> >& rDataPayload,
223 const std::string& rDatasetName,
224 const std::string& rDatasetUnit,
225 const std::string& rUnlimitedVariableName = "PaceNumber",
226 const std::string& rUnlimitedVariableUnit = "dimensionless");
227
240 std::string ConvertToHdf5FriendlyString(double threshold);
241};
242
243#endif /*POSTPROCESSINGWRITER_HPP_*/
void WriteMaxUpstrokeVelocityMap(double threshold)
void WriteConductionVelocityMap(unsigned originNode, std::vector< double > distancesFromOriginNode)
void WriteVariablesOverTimeAtNodes(std::vector< unsigned > &rNodeIndices)
void WriteUpstrokeTimeMap(double threshold)
void WriteGenericFileToMeshalyzer(std::vector< std::vector< double > > &rDataPayload, const std::string &rFolder, const std::string &rFileName)
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > & mrMesh
std::string ConvertToHdf5FriendlyString(double threshold)
void WriteApdMapFile(double repolarisationPercentage, double threshold)
void WriteOutputDataToHdf5(const std::vector< std::vector< double > > &rDataPayload, const std::string &rDatasetName, const std::string &rDatasetUnit, const std::string &rUnlimitedVariableName="PaceNumber", const std::string &rUnlimitedVariableUnit="dimensionless")
void WriteAboveThresholdDepolarisationFile(double threshold)
PropagationPropertiesCalculator * mpCalculator