Chaste
Commit::baa90ac2819b962188b7562f2326be23c47859a7
TargetedCellKiller.cpp
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/*
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Copyright (c) 2005-2024, University of Oxford.
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All rights reserved.
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University of Oxford means the Chancellor, Masters and Scholars of the
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University of Oxford, having an administrative office at Wellington
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Square, Oxford OX1 2JD, UK.
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This file is part of Chaste.
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice,
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this list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of the University of Oxford nor the names of its
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contributors may be used to endorse or promote products derived from this
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software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
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GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
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HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
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OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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*/
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#include "TargetedCellKiller.hpp"
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template
<
unsigned
DIM>
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TargetedCellKiller<DIM>::TargetedCellKiller
(
AbstractCellPopulation<DIM>
* pCellPopulation,
unsigned
targetedIndex,
bool
bloodLust)
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:
AbstractCellKiller
<DIM>(pCellPopulation),
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mTargetIndex(targetedIndex),
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mBloodLust(bloodLust)
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{
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}
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template
<
unsigned
DIM>
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unsigned
TargetedCellKiller<DIM>::GetTargetIndex
()
const
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{
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return
mTargetIndex;
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}
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template
<
unsigned
DIM>
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unsigned
TargetedCellKiller<DIM>::GetBloodLust
()
const
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{
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return
mBloodLust;
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}
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template
<
unsigned
DIM>
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void
TargetedCellKiller<DIM>::CheckAndLabelCellsForApoptosisOrDeath
()
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{
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if
(!mBloodLust || this->mpCellPopulation->GetNumRealCells() == 0 || this->mpCellPopulation->GetNumRealCells() < mTargetIndex + 1)
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{
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return
;
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}
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// Mark the cell as killed and store removal information if required.
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this->mpCellPopulation->KillCell(this->mpCellPopulation->GetCellUsingLocationIndex(mTargetIndex),
"TargetedCellKiller"
);
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mBloodLust =
false
;
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}
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template
<
unsigned
DIM>
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void
TargetedCellKiller<DIM>::OutputCellKillerParameters
(out_stream& rParamsFile)
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{
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*rParamsFile <<
"\t\t\t<TargetIndex>"
<< mTargetIndex <<
"</TargetIndex>\n"
;
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*rParamsFile <<
"\t\t\t<BloodLust>"
<< mBloodLust <<
"</BloodLust>\n"
;
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// Call method on direct parent class
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AbstractCellKiller<DIM>::OutputCellKillerParameters
(rParamsFile);
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}
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// Explicit instantiation
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template
class
TargetedCellKiller<1>
;
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template
class
TargetedCellKiller<2>
;
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template
class
TargetedCellKiller<3>
;
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// Serialization for Boost >= 1.36
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#include "
SerializationExportWrapperForCpp.hpp
"
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EXPORT_TEMPLATE_CLASS_SAME_DIMS
(
TargetedCellKiller
)
SerializationExportWrapperForCpp.hpp
EXPORT_TEMPLATE_CLASS_SAME_DIMS
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
Definition
SerializationExportWrapper.hpp:352
AbstractCellKiller
Definition
AbstractCellKiller.hpp:51
AbstractCellKiller::OutputCellKillerParameters
virtual void OutputCellKillerParameters(out_stream &rParamsFile)=0
Definition
AbstractCellKiller.cpp:66
AbstractCellPopulation
Definition
AbstractCellPopulation.hpp:83
TargetedCellKiller
Definition
TargetedCellKiller.hpp:50
TargetedCellKiller::GetBloodLust
unsigned GetBloodLust() const
Definition
TargetedCellKiller.cpp:53
TargetedCellKiller::GetTargetIndex
unsigned GetTargetIndex() const
Definition
TargetedCellKiller.cpp:47
TargetedCellKiller::CheckAndLabelCellsForApoptosisOrDeath
void CheckAndLabelCellsForApoptosisOrDeath()
Definition
TargetedCellKiller.cpp:59
TargetedCellKiller::OutputCellKillerParameters
void OutputCellKillerParameters(out_stream &rParamsFile)
Definition
TargetedCellKiller.cpp:71
TargetedCellKiller::TargetedCellKiller
TargetedCellKiller(AbstractCellPopulation< DIM > *pCellPopulation, unsigned targetedIndex, bool bloodLust=true)
Definition
TargetedCellKiller.cpp:39
cell_based
src
population
killers
TargetedCellKiller.cpp
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