Toroidal2dMesh.hpp

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*/
#ifndef TOROIDAL2DMESH_HPP_
#define TOROIDAL2DMESH_HPP_
 
#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
 
#include <cmath>
#include <map>
 
#include "MutableMesh.hpp"
#include "TrianglesMeshWriter.hpp"
 
class Toroidal2dMesh : public MutableMesh<2,2>
{
    friend class TestToroidal2dMesh;
private:
 
    double mWidth;
 
    double mHeight;
 
    std::vector<unsigned> mLeftOriginals;
 
    std::vector<unsigned> mLeftImages;
 
    std::map<unsigned, unsigned> mImageToLeftOriginalNodeMap;
 
    std::vector<unsigned> mRightOriginals;
 
    std::vector<unsigned> mRightImages;
 
    std::map<unsigned, unsigned> mImageToRightOriginalNodeMap;
 
    std::set<unsigned> mLeftPeriodicBoundaryElementIndices;
 
    std::set<unsigned> mRightPeriodicBoundaryElementIndices;
 
    std::vector<unsigned> mBottomOriginals;
 
    std::vector<unsigned> mBottomImages;
 
    std::map<unsigned, unsigned> mImageToBottomOriginalNodeMap;
 
    std::vector<unsigned> mTopOriginals;
 
    std::vector<unsigned> mTopImages;
 
    std::map<unsigned, unsigned> mImageToTopOriginalNodeMap;
 
    std::set<unsigned> mBottomPeriodicBoundaryElementIndices;
 
    std::set<unsigned> mTopPeriodicBoundaryElementIndices;
 
 
    bool mMismatchedBoundaryElements;
 
    void CreateMirrorNodes();
 
    void ReconstructCylindricalMesh();
 
    void ReconstructToroidalMesh();
 
    void CorrectCylindricalNonPeriodicMesh();
 
    void CorrectToroidalNonPeriodicMesh();
 
 
    void GenerateVectorsOfElementsStraddlingCylindricalPeriodicBoundaries();
 
    void GenerateVectorsOfElementsStraddlingToroidalPeriodicBoundaries();
 
    unsigned GetCorrespondingCylindricalNodeIndex(unsigned nodeIndex);
 
    unsigned GetCorrespondingToroidalNodeIndex(unsigned nodeIndex);
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<MutableMesh<2,2> >(*this);
        archive & mWidth;
        archive & mHeight;
    }
 
public:
 
    Toroidal2dMesh(double width, double depth);
 
    Toroidal2dMesh(double width, double depth, std::vector<Node<2>*> nodes);
 
    ~Toroidal2dMesh();
 
    void ReMesh(NodeMap& rMap);
 
    c_vector<double, 2> GetVectorFromAtoB(const c_vector<double, 2>& rLocation1, const c_vector<double, 2>& rLocation2);
 
    void SetNode(unsigned index, ChastePoint<2> point, bool concreteMove);
 
    double GetWidth(const unsigned& rDimension) const;
 
    unsigned AddNode(Node<2>* pNewNode);
 
    bool GetInstanceOfMismatchedBoundaryNodes();
 
    void RefreshMesh();
};
 
namespace boost
{
namespace serialization
{
template<class Archive>
inline void save_construct_data(
    Archive & ar, const Toroidal2dMesh * t, const unsigned int file_version)
{
    // Save data required to construct instance
    const double width = t->GetWidth(0);
    ar & width;
    const double depth = t->GetWidth(1);
    ar & depth;
}
 
template<class Archive>
inline void load_construct_data(
    Archive & ar, Toroidal2dMesh * t, const unsigned int file_version)
{
    // Retrieve data from archive required to construct new instance
    double width;
    ar & width;
    double depth;
    ar & depth;
 
    // Invoke inplace constructor to initialise instance
    ::new(t)Toroidal2dMesh(width,depth);
}
}
} // namespace ...
 
#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(Toroidal2dMesh)
 
#endif /*TOROIDAL2DMESH_HPP_*/