Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
VtkMeshWriter.hpp
1/*
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34*/
35
36#ifndef VTKMESHWRITER_HPP_
37#define VTKMESHWRITER_HPP_
38
39#ifdef CHASTE_VTK
40//Requires "sudo aptitude install libvtk5-dev" or similar
41#define _BACKWARD_BACKWARD_WARNING_H 1 //Cut out the strstream deprecated warning for now (gcc4.3)
42#include <vtkDoubleArray.h>
43#include <vtkCellData.h>
44#include <vtkPointData.h>
45#include <vtkTetra.h>
46#include <vtkTriangle.h>
47#include <vtkLine.h>
48#include <vtkUnstructuredGrid.h>
49#include <vtkUnstructuredGridWriter.h>
50#include <vtkXMLUnstructuredGridWriter.h>
51#include <vtkXMLPUnstructuredGridWriter.h>
52
53#include <vtkDataCompressor.h>
54#include "AbstractTetrahedralMeshWriter.hpp"
55#include "Version.hpp"
56
57
58#include <map>
59
60// Forward declaration prevents circular include chain
61template<unsigned SPACE_DIM>
62class NodesOnlyMesh;
63
70template <unsigned ELEMENT_DIM, unsigned SPACE_DIM>
71class VtkMeshWriter : public AbstractTetrahedralMeshWriter<ELEMENT_DIM, SPACE_DIM>
72{
73
74//Requires "sudo aptitude install libvtk5-dev" or similar
75
76private:
79 std::map<unsigned, unsigned> mGlobalToNodeIndexMap;
81 std::vector<std::vector<unsigned> > mNodesToSendPerProcess;
82 std::vector<std::vector<unsigned> > mNodesToReceivePerProcess;
86
93 vtkUnstructuredGrid* mpVtkUnstructedMesh;
94
99 void MakeVtkMesh();
100
108 void AugmentCellData();
109
110public:
111
119 VtkMeshWriter(const std::string& rDirectory, const std::string& rBaseName, const bool& rCleanDirectory=true);
120
124 void WriteFiles();
125
126
134 void AddCellData(std::string name, std::vector<double> data);
135
143 void AddCellData(std::string name, std::vector<c_vector<double, SPACE_DIM> > data);
144
153 void AddTensorCellData(std::string name, std::vector<c_vector<double,SPACE_DIM*(SPACE_DIM+1)/2> > data);
154
162 void AddTensorCellData(std::string name, std::vector<c_matrix<double,SPACE_DIM,SPACE_DIM> > data);
163
164
172 void AddPointData(std::string name, std::vector<double> data);
173
181 void AddPointData(std::string name, std::vector<c_vector<double, SPACE_DIM> > data);
182
190 void AddTensorPointData(std::string name, std::vector<c_matrix<double,SPACE_DIM,SPACE_DIM> > data);
191
199
213 bool keepOriginalElementIndexing=true);
214
220 void AddProvenance(std::string fileName);
221
225 virtual ~VtkMeshWriter();
226};
227
228#endif //CHASTE_VTK
229
230#endif /*VTKMESHWRITER_HPP_*/
void AddPointData(std::string name, std::vector< double > data)
std::vector< std::vector< unsigned > > mNodesToSendPerProcess
void SetParallelFiles(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)
void AddTensorPointData(std::string name, std::vector< c_matrix< double, SPACE_DIM, SPACE_DIM > > data)
std::map< unsigned, unsigned > mGlobalToNodeIndexMap
void AddProvenance(std::string fileName)
void AddTensorCellData(std::string name, std::vector< c_vector< double, SPACE_DIM *(SPACE_DIM+1)/2 > > data)
void AddCellData(std::string name, std::vector< double > data)
std::vector< std::vector< unsigned > > mNodesToReceivePerProcess
void WriteFilesUsingMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, bool keepOriginalElementIndexing=true)
vtkUnstructuredGrid * mpVtkUnstructedMesh
NodesOnlyMesh< SPACE_DIM > * mpNodesOnlyMesh
virtual ~VtkMeshWriter()