WntCellCycleOdeSystem.hpp

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*/
 
#ifndef WNTCELLCYCLEODESYSTEM_HPP_
#define WNTCELLCYCLEODESYSTEM_HPP_
 
#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
#include <boost/serialization/shared_ptr.hpp>
 
#include <cmath>
#include <iostream>
 
#include "AbstractOdeSystem.hpp"
#include "AbstractCellMutationState.hpp"
 
class WntCellCycleOdeSystem : public AbstractOdeSystem
{
private:
 
    double mk2d;
    double mk3d;
    double mk34d;
    double mk43d;
    double mk23d;
    double mad;
    double mJ11d;
    double mJ12d;
    double mJ13d;
    double mJ61d;
    double mJ62d;
    double mJ63d;
    double mKm1d;
    double mkpd;
    double mphi_r;
    double mphi_i;
    double mphi_j;
    double mphi_p;
    double ma2d;
    double ma3d;
    double ma4d;
    double ma5d;
    double mk16d;
    double mk61d;
    double mPhiE2F1;
 
    boost::shared_ptr<AbstractCellMutationState> mpMutationState;
 
    double mWntLevel;
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractOdeSystem>(*this);
    }
 
public:
 
    WntCellCycleOdeSystem(double wntLevel=0.0,
                          boost::shared_ptr<AbstractCellMutationState> pMutationState=boost::shared_ptr<AbstractCellMutationState>(),
                          std::vector<double> stateVariables=std::vector<double>());
 
    ~WntCellCycleOdeSystem();
 
    void Init();
 
    void SetMutationState(boost::shared_ptr<AbstractCellMutationState> pMutationState);
 
    const boost::shared_ptr<AbstractCellMutationState> GetMutationState() const;
 
    void EvaluateYDerivatives(double time, const std::vector<double>& rY, std::vector<double>& rDY);
 
    bool CalculateStoppingEvent(double time, const std::vector<double>& rY);
 
    double CalculateRootFunction(double time, const std::vector<double>& rY);
 
    double GetWntLevel() const;
};
 
// Declare identifier for the serializer
#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(WntCellCycleOdeSystem)
 
namespace boost
{
namespace serialization
{
template<class Archive>
inline void save_construct_data(
    Archive & ar, const WntCellCycleOdeSystem * t, const unsigned int file_version)
{
    // Save data required to construct instance
    const double wnt_level = t->GetWntLevel();
    ar & wnt_level;
 
    const boost::shared_ptr<AbstractCellMutationState> p_mutation_state = t->GetMutationState();
    ar & p_mutation_state;
 
    const std::vector<double>& state_variables = t->rGetConstStateVariables();
    ar & state_variables;
}
 
template<class Archive>
inline void load_construct_data(
    Archive & ar, WntCellCycleOdeSystem * t, const unsigned int file_version)
{
    // Retrieve data from archive required to construct new instance
    double wnt_level;
    ar & wnt_level;
 
    boost::shared_ptr<AbstractCellMutationState> p_mutation_state;
    ar & p_mutation_state;
 
    std::vector<double> state_variables;
    ar & state_variables;
 
    // Invoke inplace constructor to initialise instance
    ::new(t)WntCellCycleOdeSystem(wnt_level, p_mutation_state, state_variables);
}
}
} // namespace ...
 
#endif /*WNTCELLCYCLEODESYSTEM_HPP_*/