AbstractBackwardEulerCardiacCell(unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractBackwardEulerCardiacCell< 0u > | inline |
AbstractCardiacCell(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCell | |
AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCellInterface | |
AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
AdjustOutOfRangeSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | virtual |
boost::serialization::access | AbstractBackwardEulerCardiacCell< 0u > | friend |
CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
CalculateStoppingEvent(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
CheckForArchiveFix() | AbstractCardiacCell | private |
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | protected |
Compute(double tStart, double tEnd, double tSamp=0.0) | AbstractBackwardEulerCardiacCell< 0u > | inlinevirtual |
ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | virtual |
ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
ComputeExceptVoltage(double tStart, double tEnd) | AbstractBackwardEulerCardiacCell< 0u > | inlinevirtual |
ComputeOneStepExceptVoltage(double tStart)=0 | AbstractBackwardEulerCardiacCell< 0u > | protectedpure virtual |
DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | protected |
DumpState(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | protected |
DumpState(const std::string &rMessage, std::vector< double > Y, double time) | AbstractParameterisedSystem< std::vector< double > > | protected |
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | AbstractBackwardEulerCardiacCell< 0u > | inlineprivatevirtual |
GetAnyVariable(const std::string &rName, double time=0.0) | AbstractCardiacCell | virtual |
AbstractOdeSystem::GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
AbstractOdeSystem::GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetIIonic(const std::vector< double > *pStateVariables=NULL)=0 | AbstractCardiacCellInterface | pure virtual |
GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
GetIntracellularAreaStimulus(double time) | AbstractCardiacCellInterface | |
GetIntracellularCalciumConcentration() | AbstractCardiacCellInterface | virtual |
GetIntracellularStimulus(double time) | AbstractCardiacCellInterface | |
GetLookupTableCollection() | AbstractCardiacCellInterface | inlinevirtual |
GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfParameters() const | AbstractCardiacCell | virtual |
GetNumberOfStateVariables() const | AbstractCardiacCell | virtual |
GetNumSlowValues() | AbstractCardiacCell | virtual |
GetParameter(const std::string &rParameterName) | AbstractCardiacCell | virtual |
GetParameter(unsigned parameterIndex) | AbstractCardiacCell | virtual |
AbstractOdeSystem::GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
AbstractOdeSystem::GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | virtual |
GetSolver() const | AbstractCardiacCellInterface | |
GetStateMessage(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | private |
GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetStdVecStateVariables() | AbstractCardiacCell | virtual |
GetStimulus(double time) | AbstractCardiacCellInterface | |
GetStimulusFunction() | AbstractCardiacCellInterface | |
GetStimulusFunction() const | AbstractCardiacCellInterface | |
GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
GetUseAnalyticJacobian() | AbstractOdeSystem | |
GetVoltage() | AbstractCardiacCell | virtual |
GetVoltageIndex() | AbstractCardiacCellInterface | |
HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasCellMLDefaultStimulus() | AbstractCardiacCellInterface | |
HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
Init() | AbstractCardiacCell | |
IsFastOnly() | AbstractCardiacCell | virtual |
load(Archive &archive, const unsigned int version) | AbstractOdeSystem | inlineprivate |
mDt | AbstractCardiacCell | protected |
mFixedVoltage | AbstractCardiacCellInterface | protected |
mHasDefaultStimulusFromCellML | AbstractCardiacCellInterface | protected |
mIsUsedInTissue | AbstractCardiacCellInterface | protected |
mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | protected |
mParameters | AbstractParameterisedSystem< std::vector< double > > | protected |
mpIntracellularStimulus | AbstractCardiacCellInterface | protected |
mpOdeSolver | AbstractCardiacCellInterface | protected |
mpSystemInfo | AbstractUntemplatedParameterisedSystem | protected |
mSetVoltageDerivativeToZero | AbstractCardiacCellInterface | protected |
mStateVariables | AbstractParameterisedSystem< std::vector< double > > | protected |
mUseAnalyticJacobian | AbstractOdeSystem | protected |
mVoltageIndex | AbstractCardiacCellInterface | protected |
ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | virtual |
rGetConstStateVariables() const | AbstractOdeSystem | |
rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetStateVariableNames() const | AbstractCardiacCell | virtual |
rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
save(Archive &archive, const unsigned int version) const | AbstractOdeSystem | inlineprivate |
serialize(Archive &archive, const unsigned int version) | AbstractBackwardEulerCardiacCell< 0u > | inlineprivate |
SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
SetFixedVoltage(double voltage) | AbstractCardiacCellInterface | |
SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
SetParameter(const std::string &rParameterName, double value) | AbstractCardiacCell | virtual |
AbstractOdeSystem::SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetSlowValues(const std::vector< double > &rSlowValues) | AbstractCardiacCell | virtual |
SetSolver(boost::shared_ptr< AbstractIvpOdeSolver > pSolver) | AbstractCardiacCellInterface | |
SetState(CellModelState state) | AbstractCardiacCell | virtual |
SetStateVariable(unsigned index, double newValue) | AbstractCardiacCell | virtual |
SetStateVariable(const std::string &rName, double newValue) | AbstractCardiacCell | virtual |
SetStateVariables(const std::vector< double > &rVariables) | AbstractCardiacCell | virtual |
AbstractOdeSystem::SetStateVariables(const std::vector< double > &rStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
SetStretch(double stretch) | AbstractCardiacCellInterface | inlinevirtual |
SetTimestep(double dt) | AbstractCardiacCell | virtual |
SetUsedInTissueSimulation(bool tissue=true) | AbstractCardiacCellInterface | |
SetVoltage(double voltage) | AbstractCardiacCell | virtual |
SetVoltageDerivativeToZero(bool clamp=true) | AbstractCardiacCellInterface | virtual |
SolveAndUpdateState(double tStart, double tEnd) | AbstractBackwardEulerCardiacCell< 0u > | inlinevirtual |
UpdateTransmembranePotential(double time)=0 | AbstractBackwardEulerCardiacCell< 0u > | protectedpure virtual |
UseCellMLDefaultStimulus() | AbstractCardiacCellInterface | virtual |
VerifyStateVariables() | AbstractParameterisedSystem< std::vector< double > > | inlinevirtual |
~AbstractBackwardEulerCardiacCell() | AbstractBackwardEulerCardiacCell< 0u > | inlinevirtual |
~AbstractCardiacCell() | AbstractCardiacCell | virtual |
~AbstractCardiacCellInterface() | AbstractCardiacCellInterface | virtual |
~AbstractOdeSystem() | AbstractOdeSystem | virtual |
~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | virtual |