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| AbstractBackwardEulerCardiacCell (unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) |
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virtual | ~AbstractBackwardEulerCardiacCell () |
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OdeSolution | Compute (double tStart, double tEnd, double tSamp=0.0) |
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void | ComputeExceptVoltage (double tStart, double tEnd) |
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void | SolveAndUpdateState (double tStart, double tEnd) |
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| AbstractCardiacCell (boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) |
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virtual | ~AbstractCardiacCell () |
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void | Init () |
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void | SetTimestep (double dt) |
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void | SetVoltage (double voltage) |
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double | GetVoltage () |
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unsigned | GetNumberOfStateVariables () const |
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unsigned | GetNumberOfParameters () const |
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std::vector< double > | GetStdVecStateVariables () |
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const std::vector< std::string > & | rGetStateVariableNames () const |
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void | SetStateVariables (const std::vector< double > &rVariables) |
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void | SetStateVariable (unsigned index, double newValue) |
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void | SetStateVariable (const std::string &rName, double newValue) |
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double | GetAnyVariable (const std::string &rName, double time=0.0) |
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double | GetParameter (const std::string &rParameterName) |
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double | GetParameter (unsigned parameterIndex) |
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void | SetParameter (const std::string &rParameterName, double value) |
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virtual void | SetState (CellModelState state) |
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virtual void | SetSlowValues (const std::vector< double > &rSlowValues) |
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virtual void | GetSlowValues (std::vector< double > &rSlowValues) |
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virtual bool | IsFastOnly () |
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virtual void | AdjustOutOfRangeSlowValues (std::vector< double > &rSlowValues) |
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virtual unsigned | GetNumSlowValues () |
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| AbstractCardiacCellInterface (boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) |
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virtual | ~AbstractCardiacCellInterface () |
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virtual double | GetIIonic (const std::vector< double > *pStateVariables=NULL)=0 |
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unsigned | GetVoltageIndex () |
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void | SetStimulusFunction (boost::shared_ptr< AbstractStimulusFunction > pStimulus) |
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double | GetStimulus (double time) |
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void | SetIntracellularStimulusFunction (boost::shared_ptr< AbstractStimulusFunction > pStimulus) |
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double | GetIntracellularStimulus (double time) |
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double | GetIntracellularAreaStimulus (double time) |
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void | SetUsedInTissueSimulation (bool tissue=true) |
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virtual boost::shared_ptr< RegularStimulus > | UseCellMLDefaultStimulus () |
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bool | HasCellMLDefaultStimulus () |
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virtual AbstractLookupTableCollection * | GetLookupTableCollection () |
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boost::shared_ptr< AbstractStimulusFunction > | GetStimulusFunction () |
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const boost::shared_ptr< AbstractStimulusFunction > | GetStimulusFunction () const |
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const boost::shared_ptr< AbstractIvpOdeSolver > | GetSolver () const |
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void | SetSolver (boost::shared_ptr< AbstractIvpOdeSolver > pSolver) |
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virtual void | SetVoltageDerivativeToZero (bool clamp=true) |
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void | SetFixedVoltage (double voltage) |
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virtual void | SetStretch (double stretch) |
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virtual double | GetIntracellularCalciumConcentration () |
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| AbstractOdeSystem (unsigned numberOfStateVariables) |
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virtual | ~AbstractOdeSystem () |
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virtual bool | CalculateStoppingEvent (double time, const std::vector< double > &rY) |
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virtual double | CalculateRootFunction (double time, const std::vector< double > &rY) |
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bool | GetUseAnalyticJacobian () |
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const std::vector< double > & | rGetConstStateVariables () const |
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| AbstractParameterisedSystem (unsigned numberOfStateVariables) |
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std::vector< double > & | rGetStateVariables () |
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std::vector< double > | GetStateVariables () |
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void | SetStateVariables (const std::vector< double > &rStateVariables) |
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double | GetStateVariable (unsigned index) const |
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double | GetStateVariable (const std::string &rName) const |
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void | SetStateVariable (unsigned index, double newValue) |
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void | SetStateVariable (const std::string &rName, double newValue) |
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virtual void | VerifyStateVariables () |
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void | SetDefaultInitialConditions (const std::vector< double > &rInitialConditions) |
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void | SetDefaultInitialCondition (unsigned index, double initialCondition) |
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std::vector< double > | GetInitialConditions () const |
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void | ResetToInitialConditions () |
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double | GetParameter (unsigned index) const |
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double | GetParameter (const std::string &rName) const |
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void | SetParameter (const std::string &rName, double value) |
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void | SetParameter (unsigned index, double value) |
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double | GetAnyVariable (unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) |
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double | GetAnyVariable (const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) |
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void | SetAnyVariable (unsigned index, double value) |
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void | SetAnyVariable (const std::string &rName, double value) |
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virtual std::vector< double > | ComputeDerivedQuantities (double time, const std::vector< double > &rState) |
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std::vector< double > | ComputeDerivedQuantitiesFromCurrentState (double time) |
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| AbstractUntemplatedParameterisedSystem (unsigned numberOfStateVariables) |
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virtual | ~AbstractUntemplatedParameterisedSystem () |
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boost::shared_ptr< const AbstractOdeSystemInformation > | GetSystemInformation () const |
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std::string | GetSystemName () const |
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unsigned | GetNumberOfAttributes () const |
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bool | HasAttribute (const std::string &rName) const |
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double | GetAttribute (const std::string &rName) const |
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unsigned | GetNumberOfStateVariables () const |
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const std::vector< std::string > & | rGetStateVariableNames () const |
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const std::vector< std::string > & | rGetStateVariableUnits () const |
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unsigned | GetStateVariableIndex (const std::string &rName) const |
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bool | HasStateVariable (const std::string &rName) const |
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std::string | GetStateVariableUnits (unsigned index) const |
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unsigned | GetNumberOfParameters () const |
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const std::vector< std::string > & | rGetParameterNames () const |
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const std::vector< std::string > & | rGetParameterUnits () const |
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unsigned | GetParameterIndex (const std::string &rName) const |
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bool | HasParameter (const std::string &rName) const |
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std::string | GetParameterUnits (unsigned index) const |
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unsigned | GetNumberOfDerivedQuantities () const |
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const std::vector< std::string > & | rGetDerivedQuantityNames () const |
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const std::vector< std::string > & | rGetDerivedQuantityUnits () const |
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unsigned | GetDerivedQuantityIndex (const std::string &rName) const |
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bool | HasDerivedQuantity (const std::string &rName) const |
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std::string | GetDerivedQuantityUnits (unsigned index) const |
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unsigned | GetAnyVariableIndex (const std::string &rName) const |
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bool | HasAnyVariable (const std::string &rName) const |
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std::string | GetAnyVariableUnits (unsigned index) const |
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std::string | GetAnyVariableUnits (const std::string &rName) const |
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Specialization for the case where there are no non-linear ODEs in the model.
Definition at line 330 of file AbstractBackwardEulerCardiacCell.hpp.