Here is a list of all documented class members with links to the class documentation for each member:

- s -

• S1S2Stimulus() : S1S2Stimulus
• SafeNodePositionUpdate() : AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
• SampleRandomField() : OffLatticeRandomFieldGenerator< SPACE_DIM >, UniformGridRandomFieldGenerator< SPACE_DIM >
• SampleRandomFieldAtTime() : OffLatticeRandomFieldGenerator< SPACE_DIM >, UniformGridRandomFieldGenerator< SPACE_DIM >
• save() : AbstractCardiacCellWithModifiers< CARDIAC_CELL >, AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >, AbstractCvodeSystem, AbstractDynamicallyLoadableEntity, AbstractOdeSystem, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, BidomainProblem< DIM >, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• Save() : CardiacSimulationArchiver< PROBLEM_CLASS >, CellBasedSimulationArchiver< ELEMENT_DIM, SIM, SPACE_DIM >
• save() : Electrodes< DIM >, ExtendedBidomainProblem< DIM >, HeartConfig, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, MutableMesh< ELEMENT_DIM, SPACE_DIM >, NodesOnlyMesh< SPACE_DIM >, PottsMesh< DIM >, RandomNumberGenerator, SerializableSingleton< SINGLETON_CLASS >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
• SaveBoundaryConditions() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SaveCardiacCells() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• SaveCurrentLocations() : AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
• SaveCurrentNodeLocations() : AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
• SaveExtendedBidomainCells() : ExtendedBidomainTissue< SPACE_DIM >
• SaveExtracellularStimulus() : ExtendedBidomainTissue< SPACE_DIM >
• sCa : CorriasBuistSMCModified
• Scale() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, Cylindrical2dVertexMesh, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, PetscVecTools
• ScaleDistanceDownFromVoronoi() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
• ScaleMaterialParameters() : AbstractMaterialLaw< DIM >, CompressibleMooneyRivlinMaterialLaw< DIM >, MooneyRivlinMaterialLaw< DIM >, PoleZeroMaterialLaw< DIM >
• ScaleSrnVariables() : AbstractOdeSrnModel, AbstractSrnModel
• ScaleUpToVoronoiCoordinate() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
• ScheduleForDeletion() : DynamicModelLoaderRegistry
• SchemaLocationsMap : HeartConfig
• SchmidCostaExponentialLaw2d() : SchmidCostaExponentialLaw2d
• SendCellsToNeighbourProcesses() : NodeBasedCellPopulation< DIM >
• SendObject() : ObjectCommunicator< CLASS >
• SendRecvObject() : ObjectCommunicator< CLASS >
• serialize() : AbstractBackwardEulerCardiacCell< SIZE >, AbstractBackwardEulerCardiacCell< 0u >, AbstractBoundaryCondition< SPACE_DIM >, AbstractBoxDomainPdeModifier< DIM >, AbstractCaBasedDivisionRule< SPACE_DIM >, AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCaSwitchingUpdateRule< DIM >, AbstractCaUpdateRule< DIM >, AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >, AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM >, AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >, AbstractCellCycleModel, AbstractCellCycleModelOdeSolver, AbstractCellKiller< SPACE_DIM >, AbstractCellMutationState, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >, AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >, AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >, AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >, AbstractCellProliferativeType, AbstractCellProperty, AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >, AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractCentreBasedDivisionRule< ELEMENT_DIM, SPACE_DIM >, AbstractChasteRegion< SPACE_DIM >, AbstractCvodeCell, AbstractCvodeCellWithDataClamp, AbstractForce< ELEMENT_DIM, SPACE_DIM >, AbstractGeneralizedRushLarsenCardiacCell, AbstractGrowingDomainPdeModifier< DIM >, AbstractImmersedBoundaryDivisionRule< SPACE_DIM >, AbstractImmersedBoundaryForce< DIM >, AbstractIvpOdeSolver, AbstractLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >, AbstractLinearParabolicPde< ELEMENT_DIM, SPACE_DIM >, AbstractLinearPde< ELEMENT_DIM, SPACE_DIM >, AbstractMesh< ELEMENT_DIM, SPACE_DIM >, AbstractModifier, AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >, AbstractOdeBasedCellCycleModel, AbstractOdeBasedPhaseBasedCellCycleModel, AbstractOdeSrnModel, AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractOneStepIvpOdeSolver, AbstractOnLatticeCellPopulation< DIM >, AbstractOutputModifier, AbstractPdeModifier< DIM >, AbstractPhaseBasedCellCycleModel, AbstractPottsUpdateRule< DIM >, AbstractRushLarsenCardiacCell, AbstractSimpleCellCycleModel, AbstractSimpleGenerationalCellCycleModel, AbstractSimplePhaseBasedCellCycleModel, AbstractSrnModel, AbstractStimulusFunction, AbstractTargetAreaModifier< DIM >, AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >, AbstractUpdateRule< DIM >, AbstractVanLeeuwen2009WntSwatCellCycleModel, AbstractVertexBasedDivisionRule< SPACE_DIM >, AbstractWntOdeBasedCellCycleModel, ActivationOutputModifier, AdhesionPottsUpdateRule< DIM >, Alarcon2004OxygenBasedCellCycleModel, Alarcon2004OxygenBasedCellCycleOdeSystem, AlwaysDivideCellCycleModel, ApcOneHitCellMutationState, ApcTwoHitCellMutationState, ApoptoticCellKiller< SPACE_DIM >, ApoptoticCellProperty, AveragedSourceEllipticPde< DIM >, AveragedSourceParabolicPde< DIM >, BackwardEulerIvpOdeSolver, BernoulliTrialCellCycleModel, BetaCateninOneHitCellMutationState, BiasedBernoulliTrialCellCycleModel, BidomainTissue< SPACE_DIM >, BidomainWithBathProblem< DIM >, BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >, BuskeAdhesiveForce< DIM >, BuskeCompressionForce< DIM >, BuskeElasticForce< DIM >, CaBasedCellPopulation< DIM >, Cell, CellAgesWriter< ELEMENT_DIM, SPACE_DIM >, CellAncestor, CellAncestorWriter< ELEMENT_DIM, SPACE_DIM >, CellAppliedForceWriter< ELEMENT_DIM, SPACE_DIM >, CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >, CellCycleModelOdeHandler, CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >, CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >, CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >, CellCycleTimesGenerator, CellData, CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >, CellDeltaNotchWriter< ELEMENT_DIM, SPACE_DIM >, CellDivisionInfo< SPACE_DIM >, CellDivisionLocationsWriter< ELEMENT_DIM, SPACE_DIM >, CellEdgeData, CellId, CellIdWriter< ELEMENT_DIM, SPACE_DIM >, CellLabel, CellLabelWriter< ELEMENT_DIM, SPACE_DIM >, CellLocationIndexWriter< ELEMENT_DIM, SPACE_DIM >, CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >, CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >, CellPopulationAdjacencyMatrixWriter< ELEMENT_DIM, SPACE_DIM >, CellPopulationAreaWriter< ELEMENT_DIM, SPACE_DIM >, CellPopulationElementWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativePhasesWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >, CellPropertyCollection, CellPropertyRegistry, CellRadiusWriter< ELEMENT_DIM, SPACE_DIM >, CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >, CellRosetteRankWriter< ELEMENT_DIM, SPACE_DIM >, CellSrnModel, CellVecData, CellVolumesWriter< ELEMENT_DIM, SPACE_DIM >, CellwiseSourceEllipticPde< DIM >, CellwiseSourceParabolicPde< DIM >, ChasteCuboid< SPACE_DIM >, ChasteEllipsoid< SPACE_DIM >, ChasteNodesList< SPACE_DIM >, ChastePoint< DIM >, ChemotacticForce< DIM >, ChemotaxisPottsUpdateRule< DIM >, CML_noble_varghese_kohl_noble_1998_basic_with_sac, ConstBoundaryCondition< SPACE_DIM >, ContactInhibitionCellCycleModel, CorriasBuistICCModified, CorriasBuistSMCModified, CryptCentreBasedDivisionRule< ELEMENT_DIM, SPACE_DIM >, CryptProjectionForce, CryptShovingCaBasedDivisionRule, CryptSimulation1d, CryptSimulation2d, CryptSimulationBoundaryCondition< DIM >, CryptVertexBasedDivisionRule< SPACE_DIM >, CvodeAdaptor, Cylindrical2dMesh, Cylindrical2dNodesOnlyMesh, Cylindrical2dVertexMesh, DefaultCellProliferativeType, DeltaNotchEdgeInteriorTrackingModifier< DIM >, DeltaNotchEdgeOdeSystem, DeltaNotchEdgeSrnModel, DeltaNotchEdgeTrackingModifier< DIM >, DeltaNotchInteriorOdeSystem, DeltaNotchInteriorSrnModel, DeltaNotchOdeSystem, DeltaNotchSrnModel, DeltaNotchTrackingModifier< DIM >, DifferentialAdhesionGeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >, DifferentialAdhesionPottsUpdateRule< DIM >, DifferentiatedCellProliferativeType, DiffusionCaUpdateRule< DIM >, DiffusionForce< DIM >, DistributedBoxCollection< DIM >, DistributedQuadraticMesh< DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, DistributedVectorFactory, DivisionBiasTrackingModifier< DIM >, DummyModifier, Edge< SPACE_DIM >, EdgeOperation, EdgeRemapInfo, ElementAttributes< ELEMENT_DIM, SPACE_DIM >, EllipticBoxDomainPdeModifier< DIM >, EllipticGrowingDomainPdeModifier< DIM >, EulerIvpOdeSolver, ExclusionCaBasedDivisionRule< SPACE_DIM >, ExponentialG1GenerationalCellCycleModel, ExtendedBidomainTissue< SPACE_DIM >, ExtrinsicPullModifier< DIM >, FactorModifier, FakeBathCell, FarhadifarForce< DIM >, FixedCentreBasedDivisionRule< ELEMENT_DIM, SPACE_DIM >, FixedG1GenerationalCellCycleModel, FixedModifier, FixedSequenceCellCycleModel, FixedVertexBasedDivisionRule< SPACE_DIM >, FluidSource< SPACE_DIM >, ForwardEulerNumericalMethod< ELEMENT_DIM, SPACE_DIM >, GammaG1CellCycleModel, GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >, Goldbeter1991OdeSystem, Goldbeter1991SrnModel, GRL1IvpOdeSolver, GRL2IvpOdeSolver, HeterotypicBoundaryLengthWriter< ELEMENT_DIM, SPACE_DIM >, HeunIvpOdeSolver, ImmersedBoundaryBoundaryCellWriter< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryElement< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryKinematicFeedbackForce< DIM >, ImmersedBoundaryLinearDifferentialAdhesionForce< DIM >, ImmersedBoundaryLinearInteractionForce< DIM >, ImmersedBoundaryLinearMembraneForce< DIM >, ImmersedBoundaryMorseInteractionForce< DIM >, ImmersedBoundaryMorseMembraneForce< DIM >, ImmersedBoundaryNeighbourNumberWriter< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundarySimulationModifier< DIM >, ImmersedBoundarySvgWriter< DIM >, IsolatedLabelledCellKiller< DIM >, LabelDependentBernoulliTrialCellCycleModel, LegacyCellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >, LinearSpringWithVariableSpringConstantsForce< DIM >, LinearSystem, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, MeshBasedCellPopulationWithGhostNodes< DIM >, Mirams2010WntOdeSystem, MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >, MockEulerIvpOdeSolver, MonodomainProblem< ELEMENT_DIM, SPACE_DIM >, MonodomainPurkinjeProblem< ELEMENT_DIM, SPACE_DIM >, MonodomainTissue< ELEMENT_DIM, SPACE_DIM >, MultiStimulus, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >, NagaiHondaDifferentialAdhesionForce< DIM >, NagaiHondaForce< DIM >, NoCellCycleModel, Node< SPACE_DIM >, NodeAttributes< SPACE_DIM >, NodeBasedCellPopulation< DIM >, NodeBasedCellPopulationWithBuskeUpdate< DIM >, NodeBasedCellPopulationWithParticles< DIM >, NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >, NodeVelocityWriter< ELEMENT_DIM, SPACE_DIM >, NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, NormallyDistributedTargetAreaModifier< DIM >, NullSrnModel, OffLatticeRandomFieldGenerator< SPACE_DIM >, OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >, OnLatticeSimulation< DIM >, ParabolicBoxDomainPdeModifier< DIM >, ParabolicGrowingDomainPdeModifier< DIM >, PeriodicNodesOnlyMesh< SPACE_DIM >, PlanarPolarisedFarhadifarForce< DIM >, PlaneBasedCellKiller< DIM >, PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >, PopulationTestingForce< ELEMENT_DIM, SPACE_DIM >, PottsBasedCellPopulation< DIM >, PottsElement< DIM >, QuadraticMesh< DIM >, RadialCellDataDistributionWriter< ELEMENT_DIM, SPACE_DIM >, RadialSloughingCellKiller, RandomCaSwitchingUpdateRule< DIM >, RandomCellKiller< DIM >, RandomDirectionCentreBasedDivisionRule< ELEMENT_DIM, SPACE_DIM >, RandomDirectionVertexBasedDivisionRule< SPACE_DIM >, RegularStimulus, RegularStimulusZeroNetCharge, RepulsionForce< DIM >, RKC21IvpOdeSolver, RungeKutta2IvpOdeSolver, RungeKutta4IvpOdeSolver, RungeKuttaFehlbergIvpOdeSolver, S1S2Stimulus, ShortAxisImmersedBoundaryDivisionRule< SPACE_DIM >, ShortAxisVertexBasedDivisionRule< SPACE_DIM >, ShovingCaBasedDivisionRule< SPACE_DIM >, SimpleOxygenBasedCellCycleModel, SimpleStimulus, SimpleTargetAreaModifier< DIM >, SimpleWntCellCycleModel, SimulationTime, SingleOdeWntCellCycleModel, SingleTraceOutputModifier, SlidingBoundaryCondition< DIM >, SloughingCellKiller< DIM >, SphereGeometryBoundaryCondition< DIM >, SteadyStateRestitutionStimulus, StemCellProliferativeType, StochasticOxygenBasedCellCycleModel, StochasticWntCellCycleModel, SurfaceAreaConstraintPottsUpdateRule< DIM >, T1SwapInfo< SPACE_DIM >, T2SwapCellKiller< DIM >, T2SwapInfo< SPACE_DIM >, T3SwapInfo< SPACE_DIM >, TargetAreaLinearGrowthModifier< DIM >, TargetedCellKiller< DIM >, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, TimeModifier, TimeStepper, Toroidal2dMesh, Toroidal2dVertexMesh, TransitCellProliferativeType, TysonNovak2001OdeSystem, TysonNovakCellCycleModel, UniformCellCycleModel, UniformG1GenerationalCellCycleModel, UniformGridRandomFieldGenerator< SPACE_DIM >, UniformSourceEllipticPde< DIM >, UniformSourceParabolicPde< DIM >, VanLeeuwen2009WntSwatCellCycleModelHypothesisOne, VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo, VanLeeuwen2009WntSwatCellCycleOdeSystem, VertexBasedCellPopulation< DIM >, VertexBasedPopulationSrn< DIM >, VertexCryptBoundaryForce< DIM >, VertexElement< ELEMENT_DIM, SPACE_DIM >, VertexIntersectionSwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >, VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >, VertexT1SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >, VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >, VertexT3SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >, VolumeConstraintPottsUpdateRule< DIM >, VolumeDependentAveragedSourceEllipticPde< DIM >, VolumeTrackingModifier< DIM >, VonMisesVertexBasedDivisionRule< SPACE_DIM >, VoronoiDataWriter< ELEMENT_DIM, SPACE_DIM >, WelikyOsterForce< DIM >, WildTypeCellMutationState, WntCellCycleModel, WntCellCycleOdeSystem, WntConcentration< DIM >, ZeroStimulus
• Set() : LogFile, ProcessSpecificArchive< Archive >
• SetAbsoluteMovementThreshold() : AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetAbsoluteTemperature() : DiffusionForce< DIM >
• SetAbsoluteTolerance() : LinearSystem
• SetActiveTensionValue() : ConstantActiveTension
• SetAdditionalFieldNames() : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
• SetAdditiveNormalNoise() : AbstractImmersedBoundaryForce< DIM >, ImmersedBoundarySimulationModifier< DIM >
• SetAdhesionEnergyParameter() : BuskeAdhesiveForce< DIM >
• SetAgeToStartGrowing() : TargetAreaLinearGrowthModifier< DIM >
• SetAlignment() : Hdf5DataWriter
• SetAmFirstCell() : ExtendedBidomainTissue< SPACE_DIM >
• SetAmGap() : ExtendedBidomainTissue< SPACE_DIM >
• SetAmSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
• SetAncestor() : Cell
• SetAnyVariable() : AbstractParameterisedSystem< VECTOR >
• SetApdMaps() : HeartConfig
• SetApexToBase() : StreeterFibreGenerator< SPACE_DIM >
• SetApoptosisTime() : Cell
• SetApoptoticSpringCompressionStiffness() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetApoptoticSprings() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetApoptoticSpringTensionStiffness() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetAppliedToPurkinjeCellModel() : PurkinjeVentricularJunctionStimulus
• SetApplyAnisotropicCrossFibreTension() : ElectroMechanicsProblemDefinition< DIM >
• SetApplyExtrinsicPullToAllNodes() : ExtrinsicPullModifier< DIM >
• SetApplyIsotropicCrossFibreTension() : ElectroMechanicsProblemDefinition< DIM >
• SetApplyNormalPressureOnDeformedSurface() : ContinuumMechanicsProblemDefinition< DIM >
• SetArchiveDirectory() : ArchiveLocationInfo, OutputFileHandler
• SetAreaBasedDampingConstant() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetAreaBasedDampingConstantParameter() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetAreaElasticityParameter() : FarhadifarForce< DIM >
• SetAsBoundaryNode() : Node< SPACE_DIM >
• SetAsContractionOnFirstDimension() : FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
• SetAsContractionOnFourthDimension() : FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
• SetAsContractionOnSecondDimension() : FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
• SetAsContractionOnThirdDimension() : FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
• SetAssociatedElementIndex() : FluidSource< SPACE_DIM >
• SetAttribute() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• SetAverageNodeSpacing() : ImmersedBoundaryElement< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryElement< 1, SPACE_DIM >
• SetBathConductivity() : HeartConfig
• SetBathMultipleConductivities() : HeartConfig
• SetBcsOnBoxBoundary() : AbstractBoxDomainPdeModifier< DIM >
• SetBetaCateninDivisionThreshold() : SingleOdeWntCellCycleModel
• SetBetaCateninSprings() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetBetaCatSpringScaler() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetBirthTime() : AbstractCellCycleModel, AbstractOdeBasedCellCycleModel, AbstractOdeBasedPhaseBasedCellCycleModel, Cell
• SetBodyForce() : ContinuumMechanicsProblemDefinition< DIM >
• SetBottomCellAncestors() : CryptSimulation2d
• SetBoundaryConditions() : AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
• SetBoundaryConditionsContainer() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetBoundaryLineTensionParameter() : FarhadifarForce< DIM >
• SetBoundedVoroniTesselationLengthCutoff() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetBoundVoronoiTessellation() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetCaBasedDivisionRule() : CaBasedCellPopulation< DIM >
• SetCacheReplication() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• SetCalciumAndVoltage() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, AbstractCardiacMechanicsSolverInterface< DIM >
• SetCalculateNodeNeighbours() : DistributedBoxCollection< DIM >, NodesOnlyMesh< SPACE_DIM >
• SetCapacitance() : HeartConfig
• SetCarbonMonoxideScaleFactor() : CorriasBuistICCModified, CorriasBuistSMCModified
• SetCell() : AbstractCellCycleModel, AbstractSrnModel, CellSrnModel
• SetCellAncestorsToLocationIndices() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetCellBoundaryAdhesionEnergyParameter() : AdhesionPottsUpdateRule< DIM >
• SetCellCellAdhesionEnergyParameter() : AdhesionPottsUpdateRule< DIM >
• SetCellCycleDuration() : AbstractSimpleCellCycleModel, UniformCellCycleModel
• SetCellCycleModel() : Cell
• SetCellIntracellularStimulus() : HeartConfigRelatedCellFactory< SPACE_DIM >
• SetCellParameters() : HeartConfigRelatedCellFactory< SPACE_DIM >
• SetCellPopulation() : AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >, WntConcentration< DIM >
• SetCellProliferativeType() : Cell
• SetCellPropertyRegistry() : CellPropertyCollection
• SetCellRearrangementRatio() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• SetCellRearrangementThreshold() : ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• SetCellToCellSpringConst() : ImmersedBoundaryLinearDifferentialAdhesionForce< DIM >
• SetCellUsingLocationIndex() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetCentreBasedDivisionRule() : AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetChangeOfBasisMatrix() : AbstractMaterialLaw< DIM >
• SetCharacteristicNodeSpacing() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
• SetCheckForInternalIntersections() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• SetCheckForT3Swaps() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• SetCheckNumberOfProcessesOnLoad() : DistributedVectorFactory
• SetCheckpointSimulation() : HeartConfig
• SetChunkSize() : Hdf5DataWriter
• SetCmFirstCell() : ExtendedBidomainTissue< SPACE_DIM >
• SetCmSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
• SetCommentForInfoFile() : ColumnDataWriter
• SetCompatibleExtracellularStimulus() : AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >, ElectrodesStimulusFactory< DIM >
• SetCompressionEnergyParameter() : BuskeCompressionForce< DIM >
• SetComputeAverageStressPerElementDuringSolve() : AbstractNonlinearElasticitySolver< DIM >
• SetConcentrationParameter() : VonMisesVertexBasedDivisionRule< SPACE_DIM >
• SetConductionVelocityMaps() : HeartConfig
• SetConductivityHeterogeneities() : HeartConfig
• SetConductivityHeterogeneitiesEllipsoid() : HeartConfig
• SetConductivityModifier() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• SetConstantConductivities() : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >, AxisymmetricConductivityTensors< ELEMENT_DIM, SPACE_DIM >
• SetConstantFibreSheetDirections() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, AbstractCardiacMechanicsSolverInterface< DIM >
• SetConstantWntValueForTesting() : WntConcentration< DIM >
• SetContractionCellFactory() : ElectroMechanicsProblemDefinition< DIM >
• SetContractionModel() : ElectroMechanicsProblemDefinition< DIM >
• SetContractionModelOdeTimestep() : ElectroMechanicsProblemDefinition< DIM >
• SetCoordinate() : ChastePoint< DIM >
• SetCriticalHypoxicDuration() : SimpleOxygenBasedCellCycleModel
• SetCryptLength() : WntConcentration< DIM >
• SetCryptProjectionParameterA() : WntConcentration< DIM >
• SetCryptProjectionParameterB() : WntConcentration< DIM >
• SetCurrentHypoxiaOnsetTime() : SimpleOxygenBasedCellCycleModel
• SetCurrentSolution() : AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• SetCurrentTime() : AbstractNonlinearElasticitySolver< DIM >
• SetCutOffLength() : AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >
• SetDampingConstantMutant() : AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetDampingConstantNormal() : AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetDataOnAllCells() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetDefaultCellMutationStateAndProliferativeTypeOrdering() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetDefaultInitialCondition() : AbstractOdeSystemInformation, AbstractParameterisedSystem< VECTOR >
• SetDefaultInitialConditions() : AbstractOdeSystemInformation, AbstractParameterisedSystem< VECTOR >
• SetDefaultIonicModel() : HeartConfig
• SetDefaultSchemaLocations() : HeartConfig
• SetDefaultVisualizer() : XmlTransforms
• SetDeformationAffectsElectrophysiology() : ElectroMechanicsProblemDefinition< DIM >
• SetDeformationEnergyParameter() : BuskeElasticForce< DIM >, SurfaceAreaConstraintPottsUpdateRule< DIM >, VolumeConstraintPottsUpdateRule< DIM >
• SetDeleted() : NodeMap, VertexElementMap
• SetDelta() : DeltaNotchEdgeSrnModel, DeltaNotchInteriorSrnModel
• SetDensity() : ContinuumMechanicsProblemDefinition< DIM >
• SetDependentVariableName() : AbstractPdeModifier< DIM >
• SetDiffusionCoefficient() : PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetDiffusionParameter() : DiffusionCaUpdateRule< DIM >
• SetDimension() : AbstractCellCycleModel
• SetDistanceForT3SwapChecking() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• SetDistributedVectorFactory() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• SetDivisionProbability() : BernoulliTrialCellCycleModel, LabelDependentBernoulliTrialCellCycleModel
• SetDomain() : HeartConfig
• SetDrugDose() : HeartConfig
• SetDt() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >, CellCycleModelOdeHandler
• SetDuration() : RegularStimulus
• SetEdgeBasedSpringConstant() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetEdgeHelper() : MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >, VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >
• SetEdgeLocalIndex() : AbstractSrnModel
• SetEdgeModelIndicator() : AbstractSrnModel
• SetElectrodeParameters() : HeartConfig
• SetElectrodes() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, BidomainProblem< DIM >
• SetElement() : PetscMatTools, PetscVecTools
• SetElementDivisionSpacing() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
• SetElementIndex() : EdgeOperation
• SetElementIndex2() : EdgeOperation
• SetElementOwnerships() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• SetElementRestLength() : ImmersedBoundaryLinearMembraneForce< DIM >, ImmersedBoundaryMorseMembraneForce< DIM >
• SetElementSpringConst() : ImmersedBoundaryLinearMembraneForce< DIM >
• SetElementWellDepth() : ImmersedBoundaryMorseMembraneForce< DIM >
• SetEmptySites() : CaBasedCellPopulation< DIM >
• SetEndTime() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• SetEndTimeAndNumberOfTimeSteps() : SimulationTime
• SetEpsilon() : DiscreteSystemForceCalculator
• SetEpsilonForNumericalJacobian() : BackwardEulerIvpOdeSolver
• SetEquilibriumVolume() : ContactInhibitionCellCycleModel
• SetExperimentalData() : AbstractCvodeCellWithDataClamp
• SetExtendedBidomainParameters() : ExtendedBidomainProblem< DIM >
• SetExtracellularConductivities() : HeartConfig
• SetExtracellularStimulusFactory() : ExtendedBidomainProblem< DIM >
• SetFakeIccStimulusPresent() : CorriasBuistSMCModified
• SetFibreLength() : HeartConfig
• SetFibreOrientationFile() : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
• SetFileName() : AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
• SetFineCoarseMeshPair() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, AbstractCardiacMechanicsSolverInterface< DIM >
• SetFirstAttribute() : ElementAttributes< ELEMENT_DIM, SPACE_DIM >
• SetFixedChunkSize() : Hdf5DataWriter
• SetFixedExtracellularPotentialNodes() : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >, BidomainProblem< DIM >, ExtendedBidomainProblem< DIM >
• SetFixedNodes() : SolidMechanicsProblemDefinition< DIM >
• SetFixedSchemaLocations() : HeartConfig
• SetFixedVoltage() : AbstractCardiacCellInterface
• SetFluidSource() : ImmersedBoundaryElement< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryElement< 1, SPACE_DIM >
• SetForceCollection() : AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
• SetForceReset() : AbstractCvodeSystem, CvodeAdaptor
• SetFractionOfVDDRInPU() : CorriasBuistICCModified
• SetFromFactory() : DistributedVectorFactory
• SetG1Duration() : AbstractSimplePhaseBasedCellCycleModel, ExponentialG1GenerationalCellCycleModel, FixedSequenceCellCycleModel, GammaG1CellCycleModel, SimpleWntCellCycleModel, UniformG1GenerationalCellCycleModel
• SetG2Duration() : AbstractPhaseBasedCellCycleModel
• SetGeneration() : AbstractSimpleGenerationalCellCycleModel
• SetGGap() : ExtendedBidomainTissue< SPACE_DIM >
• SetGgapHeterogeneities() : ExtendedBidomainProblem< DIM >, ExtendedBidomainTissue< SPACE_DIM >
• SetGhostNodes() : MeshBasedCellPopulationWithGhostNodes< DIM >
• SetGrowthDuration() : NormallyDistributedTargetAreaModifier< DIM >, SimpleTargetAreaModifier< DIM >
• SetGrowthRate() : TargetAreaLinearGrowthModifier< DIM >
• SetHaloOffset() : Cylindrical2dMesh
• SetHaloScalingFactor() : Cylindrical2dMesh
• SetHasBath() : ExtendedBidomainProblem< DIM >
• SetHdf5DataReader() : PropagationPropertiesCalculator
• SetHdf5DataWriterTargetChunkSizeAndAlignment() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetHeartGeometryInformation() : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
• SetHeight() : Toroidal2dVertexMesh
• SetHeterotypicSpringConstantMultiplier() : DifferentialAdhesionGeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
• SetHomotypicLabelledSpringConstantMultiplier() : DifferentialAdhesionGeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
• SetHypoxicConcentration() : SimpleOxygenBasedCellCycleModel
• SetIc50Value() : HeartConfig
• SetIdentityBlockToLhsMatrix() : MonodomainPurkinjeSolver< ELEMENT_DIM, SPACE_DIM >
• SetIfPopulationHasActiveSources() : ImmersedBoundaryCellPopulation< DIM >
• SetIfSourceIsAssociatedWithElement() : FluidSource< SPACE_DIM >
• SetIgnoreCommentLines() : FileComparison
• SetIgnoreLinesBeginningWith() : FileComparison
• SetImmersedBoundaryDivisionRule() : ImmersedBoundaryCellPopulation< DIM >
• SetIncludeActiveTension() : AbstractNonlinearElasticitySolver< DIM >
• SetIndex() : AbstractElement< ELEMENT_DIM, SPACE_DIM >, Edge< SPACE_DIM >, FluidSource< SPACE_DIM >, Node< SPACE_DIM >
• SetInitialBoxCollection() : NodesOnlyMesh< SPACE_DIM >
• SetInitialCondition() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetInitialConditions() : AbstractOdeSrnModel
• SetInitialConditionVector() : OdeLinearSystemSolver
• SetInitialConvergenceParameters() : AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
• SetInputParameters() : AbstractContractionModel, ConstantActiveTension, FakeBathContractionModel, Kerchoffs2003ContractionModel, Nash2004ContractionModel, NhsContractionModel, NonPhysiologicalContractionModel
• SetInteractionDistance() : ImmersedBoundaryCellPopulation< DIM >
• SetInteriorSrnModel() : CellSrnModel
• SetIntracellularCalciumConcentration() : NhsContractionModel
• SetIntracellularConductivities() : HeartConfig
• SetIntracellularConductivitiesForSecondCell() : ExtendedBidomainProblem< DIM >
• SetIntracellularConductivitiesSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
• SetIntracellularStimulusFunction() : AbstractCardiacCellInterface
• SetIonicModelRegions() : HeartConfig
• SetIP3Concentration() : CorriasBuistICCModified
• SetIsBoundaryElement() : ImmersedBoundaryElement< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryElement< 1, SPACE_DIM >
• SetIsLabelled() : Alarcon2004OxygenBasedCellCycleOdeSystem
• SetIsParticle() : Node< SPACE_DIM >, NodeAttributes< SPACE_DIM >
• SetItem() : CellData, CellEdgeData, CellVecData
• SetIterateRandomlyOverUpdateRuleCollection() : AbstractOnLatticeCellPopulation< DIM >
• SetKspAbsoluteTolerance() : AbstractNonlinearElasticitySolver< DIM >, StokesFlowSolver< DIM >
• SetKSPPreconditioner() : HeartConfig
• SetKSPSolver() : HeartConfig
• SetKspSolverAndPcType() : AbstractNonlinearElasticitySolver< DIM >
• SetKspType() : LinearSystem
• SetLabelledCellBoundaryAdhesionEnergyParameter() : DifferentialAdhesionPottsUpdateRule< DIM >
• SetLabelledCellCellAdhesionEnergyParameter() : DifferentialAdhesionPottsUpdateRule< DIM >
• SetLabelledCellLabelledCellAdhesionEnergyParameter() : DifferentialAdhesionPottsUpdateRule< DIM >
• SetLabelledCellToCellSpringConst() : ImmersedBoundaryLinearDifferentialAdhesionForce< DIM >
• SetLabelledCellToLabelledCellSpringConst() : ImmersedBoundaryLinearDifferentialAdhesionForce< DIM >
• SetLabelledDivisionProbability() : LabelDependentBernoulliTrialCellCycleModel
• SetLaminaRestLength() : ImmersedBoundaryLinearMembraneForce< DIM >, ImmersedBoundaryMorseMembraneForce< DIM >
• SetLaminaRestLengthMult() : ImmersedBoundaryLinearInteractionForce< DIM >, ImmersedBoundaryMorseInteractionForce< DIM >
• SetLaminaSpringConst() : ImmersedBoundaryLinearMembraneForce< DIM >
• SetLaminaSpringConstMult() : ImmersedBoundaryLinearInteractionForce< DIM >
• SetLaminaWellDepth() : ImmersedBoundaryMorseMembraneForce< DIM >
• SetLaminaWellDepthMult() : ImmersedBoundaryMorseInteractionForce< DIM >
• SetLastTime() : CellCycleModelOdeHandler
• SetLineTensionParameter() : FarhadifarForce< DIM >
• SetLoadBalanceFrequency() : NodeBasedCellPopulation< DIM >
• SetLoadBalanceMesh() : NodeBasedCellPopulation< DIM >
• SetLoader() : AbstractDynamicallyLoadableEntity
• SetLogged() : Cell
• SetLogInfo() : StreeterFibreGenerator< SPACE_DIM >
• SetMagnitude() : RegularStimulus
• SetMainDatasetRawChunkCache() : AbstractHdf5Access
• SetMaterialLaw() : SolidMechanicsProblemDefinition< DIM >
• SetMatrixElement() : LinearSystem
• SetMatrixIsConstant() : LinearSystem
• SetMatrixIsNotAssembled() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetMatrixIsSymmetric() : LinearSystem
• SetMatrixRow() : LinearSystem
• SetMatrixToAssemble() : AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
• SetMatureCellTargetSurfaceArea() : SurfaceAreaConstraintPottsUpdateRule< DIM >
• SetMatureCellTargetVolume() : VolumeConstraintPottsUpdateRule< DIM >
• SetMaxCellCycleDuration() : UniformCellCycleModel
• SetMaxDivisionProbability() : BiasedBernoulliTrialCellCycleModel
• SetMaximumInteractionDistance() : NodesOnlyMesh< SPACE_DIM >
• SetMaxNumPaces() : AbstractSteadyStateRunner
• SetMaxSteps() : AbstractCellCycleModelOdeSolver, AbstractCvodeSystem, CvodeAdaptor
• SetMaxTimestep() : AbstractCvodeCell
• SetMaxTransitGenerations() : AbstractSimpleGenerationalCellCycleModel
• SetMaxUpstrokeVelocityMaps() : HeartConfig
• SetMDuration() : AbstractPhaseBasedCellCycleModel
• SetMeanParameter() : VonMisesVertexBasedDivisionRule< SPACE_DIM >
• SetMechanicsMesh() : AbstractContractionCellFactory< DIM >
• SetMechanicsSolveTimestep() : ElectroMechanicsProblemDefinition< DIM >
• SetMeinekeDivisionRestingSpringLength() : GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
• SetMeinekeDivisionSeparation() : AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetMeinekeSpringGrowthDuration() : GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
• SetMeinekeSpringStiffness() : GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
• SetMesh() : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >, AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >, AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >
• SetMeshFilename() : ArchiveLocationInfo
• SetMeshFileName() : HeartConfig
• SetMeshHasChangedSinceLoading() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• SetMeshOperationTracking() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• SetMeshPartitioning() : HeartConfig
• SetMeshPathname() : ArchiveLocationInfo
• SetMeshWidth() : AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
• SetMessage() : Exception
• SetMinCellCycleDuration() : UniformCellCycleModel
• SetMinimalReset() : AbstractCvodeSystem, CvodeAdaptor
• SetMinimumDivisionAge() : BernoulliTrialCellCycleModel, BiasedBernoulliTrialCellCycleModel, LabelDependentBernoulliTrialCellCycleModel
• SetMinimumGapDuration() : AbstractPhaseBasedCellCycleModel
• SetMinimumNodeDomainBoundarySeparation() : NodesOnlyMesh< SPACE_DIM >
• SetModifier() : AbstractCardiacCellWithModifiers< CARDIAC_CELL >
• SetMutantSprings() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetMutationState() : Cell, Mirams2010WntOdeSystem, VanLeeuwen2009WntSwatCellCycleOdeSystem, WntCellCycleOdeSystem
• SetNagaiHondaCellBoundaryAdhesionEnergyParameter() : NagaiHondaForce< DIM >
• SetNagaiHondaCellCellAdhesionEnergyParameter() : NagaiHondaForce< DIM >
• SetNagaiHondaDeformationEnergyParameter() : NagaiHondaForce< DIM >
• SetNagaiHondaLabelledCellBoundaryAdhesionEnergyParameter() : NagaiHondaDifferentialAdhesionForce< DIM >
• SetNagaiHondaLabelledCellCellAdhesionEnergyParameter() : NagaiHondaDifferentialAdhesionForce< DIM >
• SetNagaiHondaLabelledCellLabelledCellAdhesionEnergyParameter() : NagaiHondaDifferentialAdhesionForce< DIM >
• SetNagaiHondaMembraneSurfaceEnergyParameter() : NagaiHondaForce< DIM >
• SetNagaiHondaTargetAreaParameter() : NagaiHondaForce< DIM >
• SetNamespace() : XmlTools
• SetNeighbourDist() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
• SetNeighboursSetUp() : Node< SPACE_DIM >, NodeAttributes< SPACE_DIM >
• SetNewIndex() : NodeMap, VertexElementMap
• SetNoBirth() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• SetNode() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractOnLatticeCellPopulation< DIM >, Cylindrical2dMesh, Cylindrical2dNodesOnlyMesh, Cylindrical2dVertexMesh, ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, MutableMesh< ELEMENT_DIM, SPACE_DIM >, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, NodesOnlyMesh< SPACE_DIM >, PeriodicNodesOnlyMesh< SPACE_DIM >, Toroidal2dMesh, Toroidal2dVertexMesh, VertexBasedCellPopulation< DIM >
• SetNodeForAverageOfPhiZeroed() : BidomainProblem< DIM >, ExtendedBidomainProblem< DIM >
• SetNodeNeighbourUpdateFrequency() : ImmersedBoundarySimulationModifier< DIM >
• SetNodePermutation() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
• SetNodes() : Edge< SPACE_DIM >
• SetNodesPerProcessorFilename() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetNoElectricsOutput() : CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
• SetNoiseLengthScale() : ImmersedBoundarySimulationModifier< DIM >
• SetNoiseSkip() : ImmersedBoundarySimulationModifier< DIM >
• SetNoiseStrength() : ImmersedBoundarySimulationModifier< DIM >
• SetNonConstantConductivities() : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
• SetNonlinearSolver() : AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetNormalNoiseMean() : AbstractImmersedBoundaryForce< DIM >
• SetNormalNoiseStdDev() : AbstractImmersedBoundaryForce< DIM >
• SetNotch() : DeltaNotchEdgeSrnModel, DeltaNotchInteriorSrnModel
• SetNullBasis() : LinearSystem
• SetNumberOfTimeSteps() : OdeSolution
• SetNumericalMethod() : OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
• SetNumGridPtsX() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
• SetNumGridPtsXAndY() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
• SetNumGridPtsY() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
• SetNumIncrementsForInitialDeformation() : ElectroMechanicsProblemDefinition< DIM >
• SetNumRadialBins() : RadialCellDataDistributionWriter< ELEMENT_DIM, SPACE_DIM >
• SetNumSweepsPerTimestep() : PottsBasedCellPopulation< DIM >
• SetOdePdeAndPrintingTimeSteps() : HeartConfig
• SetOdeSystem() : CellCycleModelOdeHandler
• SetOdeSystemInformation() : OdeSolution
• SetOdeTimeStep() : HeartConfig
• SetOffsetNewBoundaryNodes() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetOption() : PetscMatTools, PetscTools
• SetOptions() : CellMLToSharedLibraryConverter
• SetOriginalFactory() : DistributedVectorFactory
• SetOutputCellRearrangementLocations() : VertexBasedCellPopulation< DIM >
• SetOutputCellVelocities() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• SetOutputDeformationGradientsAndStress() : CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
• SetOutputDirectory() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >, ExecutableSupport, HeartConfig, LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetOutputDirectoryAndPrefix() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetOutputDivisionLocations() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• SetOutputFilenamePrefix() : HeartConfig
• SetOutputGradient() : AbstractPdeModifier< DIM >
• SetOutputNodeRegionToVtk() : ImmersedBoundaryCellPopulation< DIM >
• SetOutputNodes() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetOutputResultsForChasteVisualizer() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetOutputSolutionAtPdeNodes() : AbstractPdeModifier< DIM >
• SetOutputToParallelVtk() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetOutputToTxt() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetOutputToVtk() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetOutputUsingOriginalNodeOrdering() : HeartConfig
• SetOutputVariables() : HeartConfig
• SetOwnership() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• SetParallelFiles() : VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
• SetParameter() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell, AbstractParameterisedSystem< VECTOR >
• SetParameters() : PoleZeroMaterialLaw< DIM >
• SetParametersFile() : HeartConfig
• SetParticles() : NodeBasedCellPopulationWithParticles< DIM >
• SetPath() : FileFinder
• SetPcType() : LinearSystem
• SetPdeSolution() : AbstractOdeSystemForCoupledPdeSystem
• SetPdeTimeStep() : HeartConfig
• SetPdeTimeStepAndNextTime() : PdeSimulationTime
• SetPerimeterContractilityParameter() : FarhadifarForce< DIM >
• SetPeriod() : RegularStimulus
• SetPlanarPolarisedLineTensionMultiplier() : PlanarPolarisedFarhadifarForce< DIM >
• SetPoint() : Node< SPACE_DIM >
• SetPrecision() : LogFile
• SetPrecondMatrixIsDifferentFromLhs() : LinearSystem
• SetPrescribedFlowNodes() : StokesFlowProblemDefinition< DIM >
• SetPressureScaling() : ContinuumMechanicsProblemDefinition< DIM >
• SetPrintingTimeStep() : HeartConfig
• SetPrintingTimestepMultiple() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetProcessRegion() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• SetProteinConcentrationsForTestsOnly() : CellCycleModelOdeHandler
• SetProtorosetteFormationProbability() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• SetProtorosetteResolutionProbabilityPerTimestep() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• SetPseudoEcgElectrodePositions() : HeartConfig
• SetPurkinjeCapacitance() : HeartConfig
• SetPurkinjeCellModel() : PurkinjeVentricularJunctionStimulus
• SetPurkinjeConductivity() : HeartConfig
• SetPurkinjeSurfaceAreaToVolumeRatio() : HeartConfig
• SetQuiescentConcentration() : SimpleOxygenBasedCellCycleModel
• SetQuiescentVolumeFraction() : ContactInhibitionCellCycleModel
• SetRadius() : Node< SPACE_DIM >, NodeAttributes< SPACE_DIM >
• SetRandomSeed() : CellCycleTimesGenerator, OffLatticeRandomFieldGenerator< SPACE_DIM >, UniformGridRandomFieldGenerator< SPACE_DIM >
• SetRate() : CellCycleTimesGenerator, ExponentialG1GenerationalCellCycleModel, FixedSequenceCellCycleModel
• SetReadBufferSize() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
• SetReferenceTargetArea() : AbstractTargetAreaModifier< DIM >
• SetRegion() : Node< SPACE_DIM >, NodeAttributes< SPACE_DIM >
• SetRegionNames() : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
• SetRelativeTolerance() : LinearSystem
• SetReMeshFrequency() : ImmersedBoundaryCellPopulation< DIM >
• SetRequestedNodalTimeTraces() : HeartConfig
• SetRestLength() : ImmersedBoundaryLinearDifferentialAdhesionForce< DIM >, ImmersedBoundaryLinearInteractionForce< DIM >, ImmersedBoundaryMorseInteractionForce< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetRestrictVertexMovementBoolean() : VertexBasedCellPopulation< DIM >
• SetReynoldsNumber() : ImmersedBoundarySimulationModifier< DIM >
• SetRhsVectorElement() : LinearSystem
• SetRosetteResolutionProbabilityPerTimestep() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• SetRow() : PetscMatTools
• SetRowForAverageOfPhiZeroed() : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >
• SetS2ExperimentPeriodIndex() : S1S2Stimulus
• SetSamplingMultiple() : ImmersedBoundarySvgWriter< DIM >
• SetSamplingTimeStep() : LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetSamplingTimestepMultiple() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• SetScale() : GammaG1CellCycleModel
• SetScaleBoundByEdgeLength() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetScaleFactor() : NaturalNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetSDuration() : AbstractPhaseBasedCellCycleModel
• SetSercaPumpScaleFactor() : CorriasBuistICCModified
• SetShape() : GammaG1CellCycleModel
• SetSheetDimensions() : HeartConfig
• SetSimulatedToTime() : AbstractSrnModel
• SetSimulationDuration() : HeartConfig
• SetSizeOfOdeSystem() : AbstractCellCycleModelOdeSolver
• SetSlabDimensions() : HeartConfig
• SetSlowValues() : AbstractCardiacCell
• SetSolver() : AbstractCardiacCellInterface
• SetSolverName() : OdeSolution
• SetSolverType() : ElectroMechanicsProblemDefinition< DIM >
• SetSolveUsingSnes() : SolidMechanicsProblemDefinition< DIM >
• SetSpaceDimension() : HeartConfig
• SetSpeed() : ExtrinsicPullModifier< DIM >
• SetSplitProportions() : EdgeRemapInfo
• SetSpringConst() : ImmersedBoundaryKinematicFeedbackForce< DIM >, ImmersedBoundaryLinearInteractionForce< DIM >
• SetSrnModel() : Cell
• SetStartTime() : RegularStimulus, SimpleStimulus, SimulationTime
• SetState() : AbstractCardiacCell
• SetStateVariable() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell, AbstractParameterisedSystem< VECTOR >
• SetStateVariables() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell, AbstractParameterisedSystem< VECTOR >, CellCycleModelOdeHandler
• SetStemCellG1Duration() : AbstractPhaseBasedCellCycleModel, ExponentialG1GenerationalCellCycleModel, FixedSequenceCellCycleModel
• SetStimulusFunction() : AbstractCardiacCellInterface
• SetStopTime() : RegularStimulus
• SetStrength() : FluidSource< SPACE_DIM >
• SetStretch() : AbstractCardiacCellInterface, AbstractContractionModel, CML_noble_varghese_kohl_noble_1998_basic_with_sac
• SetStretchAndStretchRate() : AbstractContractionModel, ConstantActiveTension, FakeBathContractionModel, Kerchoffs2003ContractionModel, Nash2004ContractionModel, NhsContractionModel, NonPhysiologicalContractionModel
• SetSurfaceAreaToVolumeRatio() : HeartConfig
• SetSurfaceFiles() : StreeterFibreGenerator< SPACE_DIM >
• SetSvgSize() : ImmersedBoundarySvgWriter< DIM >
• SetSwitchingParameter() : RandomCaSwitchingUpdateRule< DIM >
• SetT2Threshold() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• SetTableProperties() : AbstractLookupTableCollection
• SetTakeFullFirstNewtonStep() : AbstractNonlinearElasticitySolver< DIM >
• SetTargetAreaParameter() : FarhadifarForce< DIM >
• SetTargetChunkSize() : Hdf5DataWriter
• SetTemperature() : PottsBasedCellPopulation< DIM >
• SetThrowsStepSizeException() : ImmersedBoundaryCellPopulation< DIM >
• SetTime() : PdeSimulationTime
• SetTimeAdaptivityController() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetTimes() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetTimestep() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell
• SetTimeStep() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetTimestep() : AbstractLookupTableCollection
• SetTissueAndBathIdentifiers() : HeartConfig
• SetTolerance() : SimpleNewtonNonlinearSolver
• SetTolerances() : AbstractCellCycleModelOdeSolver, AbstractCvodeSystem, CvodeAdaptor
• SetTractionBoundaryConditions() : ContinuumMechanicsProblemDefinition< DIM >
• SetTransitCellG1Duration() : AbstractPhaseBasedCellCycleModel, ExponentialG1GenerationalCellCycleModel, FixedSequenceCellCycleModel
• SetType() : WntConcentration< DIM >
• SetUnlimitedDatasetId() : AbstractHdf5Access
• setUp() : AbstractCellBasedTestSuite, AbstractCellBasedWithTimingsTestSuite
• Setup() : AbstractFileComparison
• SetUpAdditionalStoppingTimes() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, BidomainProblem< DIM >
• SetupAllLocalBoxes() : DistributedBoxCollection< DIM >, ObsoleteBoxCollection< DIM >
• SetUpBoxCollection() : Cylindrical2dNodesOnlyMesh, NodesOnlyMesh< SPACE_DIM >, PeriodicNodesOnlyMesh< SPACE_DIM >
• SetUpBoxes() : FineCoarseMeshPair< DIM >
• SetUpBoxesOnCoarseMesh() : FineCoarseMeshPair< DIM >
• SetUpBoxesOnFineMesh() : FineCoarseMeshPair< DIM >
• SetupChangeOfBasisMatrix() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, AbstractNonlinearElasticitySolver< DIM >
• SetupCommentLines() : FileComparison
• SetupConstantMemberVariables() : ImmersedBoundarySimulationModifier< DIM >
• SetupCvode() : AbstractCvodeSystem, CvodeAdaptor
• SetUpdateCellPopulationRule() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• SetUpdateNodesInRandomOrder() : AbstractOnLatticeCellPopulation< DIM >
• SetUpdatingTimestepMultiple() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• SetupGivenLinearSystem() : AbstractAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, INTERPOLATION_LEVEL >
• SetupGradients() : CellwiseDataGradient< DIM >
• SetupHaloBoxes() : DistributedBoxCollection< DIM >
• SetUpHaloCells() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• SetupInitialSolutionVector() : ParabolicBoxDomainPdeModifier< DIM >
• SetupInterleavedVectorScatterGather() : PetscVecTools
• SetupLinearSystem() : AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, BidomainSolver< ELEMENT_DIM, SPACE_DIM >, ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM >, LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, MonodomainPurkinjeSolver< ELEMENT_DIM, SPACE_DIM >, MonodomainSolver< ELEMENT_DIM, SPACE_DIM >, OperatorSplittingMonodomainSolver< ELEMENT_DIM, SPACE_DIM >, SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >, SimpleLinearParabolicSolver< ELEMENT_DIM, SPACE_DIM >
• SetupLocalBoxes() : ObsoleteBoxCollection< DIM >
• SetupLocalBoxesHalfOnly() : DistributedBoxCollection< DIM >, ObsoleteBoxCollection< DIM >
• SetupMat() : PetscTools
• SetupSolve() : AbstractBoxDomainPdeModifier< DIM >, AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >, AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM >, AbstractPdeModifier< DIM >, AbstractTargetAreaModifier< DIM >, CryptSimulation2d, DeltaNotchEdgeInteriorTrackingModifier< DIM >, DeltaNotchEdgeTrackingModifier< DIM >, DeltaNotchTrackingModifier< DIM >, DivisionBiasTrackingModifier< DIM >, EllipticBoxDomainPdeModifier< DIM >, EllipticGrowingDomainPdeModifier< DIM >, ExtrinsicPullModifier< DIM >, ImmersedBoundarySimulationModifier< DIM >, ImmersedBoundarySvgWriter< DIM >, OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >, ParabolicBoxDomainPdeModifier< DIM >, ParabolicGrowingDomainPdeModifier< DIM >, VolumeTrackingModifier< DIM >
• SetupSourceTerms() : AveragedSourceEllipticPde< DIM >, AveragedSourceParabolicPde< DIM >, VolumeDependentAveragedSourceEllipticPde< DIM >
• SetUpSourceTermsForAveragedSourcePde() : AbstractPdeModifier< DIM >
• SetUpstrokeTimeMaps() : HeartConfig
• setUpWorld() : PetscSetup
• SetUseAbsoluteTolerance() : HeartConfig
• SetUseAdaptiveTimestep() : AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
• SetUseCellProliferativeTypeDependentG1Duration() : SimpleWntCellCycleModel
• SetUseDefaultCardiacMaterialLaw() : ElectroMechanicsProblemDefinition< DIM >
• SetUsedInTissueSimulation() : AbstractCardiacCellInterface
• SetUseFixedNumberIterations() : LinearSystem
• SetUseFixedNumberIterationsLinearSolver() : HeartConfig
• SetUseFixedSchemaLocation() : HeartConfig
• SetUseHdf5DataWriterCache() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetUseJiggledBottomCells() : CryptSimulationBoundaryCondition< DIM >
• SetUseJiggledNodesOnPlane() : PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
• SetUseMassLumping() : HeartConfig
• SetUseMassLumpingForPrecond() : HeartConfig
• SetUsePetscDirectSolve() : AbstractNonlinearElasticitySolver< DIM >
• SetUseReactionDiffusionOperatorSplitting() : HeartConfig
• SetUseRelativeTolerance() : HeartConfig
• SetUserSuppliedExtracellularStimulus() : ExtendedBidomainTissue< SPACE_DIM >
• SetUseStateVariableInterpolation() : HeartConfig
• SetUseTimeAdaptivityController() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetUseUpdateNodeLocation() : AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
• SetUseVariableRadii() : NodeBasedCellPopulation< DIM >
• SetVariableFibreSheetDirections() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, AbstractCardiacMechanicsSolverInterface< DIM >
• SetVariableFibreSheetDirectionsFile() : ElectroMechanicsProblemDefinition< DIM >
• SetVariableName() : RadialCellDataDistributionWriter< ELEMENT_DIM, SPACE_DIM >
• SetVectorToAssemble() : AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
• SetVentricularCellModel() : PurkinjeVentricularJunctionStimulus
• SetVerboseDuringSolve() : ContinuumMechanicsProblemDefinition< DIM >
• SetVertexBasedDivisionRule() : VertexBasedCellPopulation< DIM >
• SetVertexCellPopulation() : VertexBasedPopulationSrn< DIM >
• SetViscosity() : DiffusionForce< DIM >, StokesFlowProblemDefinition< DIM >
• SetVisualizerOutputPrecision() : HeartConfig
• SetVisualizeWithCmgui() : HeartConfig
• SetVisualizeWithMeshalyzer() : HeartConfig
• SetVisualizeWithParallelVtk() : HeartConfig
• SetVisualizeWithVtk() : HeartConfig
• SetVoltage() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell
• SetVoltageDerivativeToZero() : AbstractCardiacCellInterface, AbstractCvodeCell
• SetVtkCellDataName() : AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
• SetVtkVectorCellDataName() : AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
• SetWatchedPosition() : CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
• SetWelikyOsterAreaParameter() : WelikyOsterForce< DIM >
• SetWelikyOsterPerimeterParameter() : WelikyOsterForce< DIM >
• SetWellDepth() : ImmersedBoundaryMorseInteractionForce< DIM >
• SetWellWidth() : ImmersedBoundaryMorseInteractionForce< DIM >, ImmersedBoundaryMorseMembraneForce< DIM >
• SetWidth() : Toroidal2dVertexMesh
• SetWntChemotaxis() : CryptProjectionForce
• SetWntChemotaxisStrength() : CryptProjectionForce
• SetWntConcentrationParameter() : WntConcentration< DIM >
• SetWntLabelledThreshold() : SimpleWntCellCycleModel
• SetWntStemThreshold() : SimpleWntCellCycleModel
• SetWntTransitThreshold() : SimpleWntCellCycleModel
• SetWriteCellVtkResults() : VertexBasedCellPopulation< DIM >
• SetWriteEdgeVtkResults() : VertexBasedCellPopulation< DIM >
• SetWriteElementWiseStrains() : VtkNonlinearElasticitySolutionWriter< DIM >
• SetWriteFileAsBinary() : AbstractPerElementWriter< ELEMENT_DIM, SPACE_DIM, DATA_SIZE >, FibreWriter< DIM >
• SetWriteFilesAsBinary() : TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >
• SetWriteInfo() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetWriteOutput() : AbstractContinuumMechanicsSolver< DIM >
• SetWriteOutputEachNewtonIteration() : AbstractNonlinearElasticitySolver< DIM >
• SetWriteStats() : SimpleNewtonNonlinearSolver
• SetWriteVtkAsPoints() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SetZeroDirichletNodes() : ContinuumMechanicsProblemDefinition< DIM >
• SetZeroDisplacementNodes() : SolidMechanicsProblemDefinition< DIM >
• SetZeroFieldSums() : ImmersedBoundarySimulationModifier< DIM >
• SetZeroFlowNodes() : StokesFlowProblemDefinition< DIM >
• ShareCoarseElementData() : FineCoarseMeshPair< DIM >
• ShareFineElementData() : FineCoarseMeshPair< DIM >
• ShortAxisImmersedBoundaryDivisionRule() : ShortAxisImmersedBoundaryDivisionRule< SPACE_DIM >
• ShortAxisVertexBasedDivisionRule() : ShortAxisVertexBasedDivisionRule< SPACE_DIM >
• ShouldAssembleMatrixTermForPressureOnDeformedBc() : AbstractNonlinearElasticitySolver< DIM >
• ShouldSkipThisElement() : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ShovingCaBasedDivisionRule() : ShovingCaBasedDivisionRule< SPACE_DIM >
• ShowCopyright() : ExecutableSupport
• ShowParallelLaunching() : ExecutableSupport
• Shuffle() : RandomNumberGenerator
• SIG_FILE_NAME : OutputFileHandler
• sigma() : boost::random::normal_distribution_v165< RealType >::param_type, boost::random::normal_distribution_v165< RealType >
• SimpleDataWriter() : SimpleDataWriter
• SimpleLinearEllipticSolver() : SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >
• SimpleLinearParabolicSolver() : SimpleLinearParabolicSolver< ELEMENT_DIM, SPACE_DIM >
• SimpleNewtonNonlinearSolver() : SimpleNewtonNonlinearSolver
• SimpleNonlinearEllipticSolver() : SimpleNonlinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >
• SimpleOxygenBasedCellCycleModel() : SimpleOxygenBasedCellCycleModel
• SimpleStimulus() : SimpleStimulus
• SimpleTargetAreaModifier() : SimpleTargetAreaModifier< DIM >
• SimpleWntCellCycleModel() : SimpleWntCellCycleModel
• SimulateFullActionPotential : AbstractUntemplatedConvergenceTester
• SimulateToCurrentTime() : AbstractOdeSrnModel, AbstractSrnModel, CellSrnModel, DeltaNotchEdgeSrnModel, DeltaNotchInteriorSrnModel, DeltaNotchSrnModel, Goldbeter1991SrnModel, NullSrnModel
• SimulationSetupHook() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, VertexBasedCellPopulation< DIM >
• SimulationTime() : SimulationTime
• SingleDistance() : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
• SingleOdeWntCellCycleModel() : SingleOdeWntCellCycleModel
• SingleTraceOutputModifier() : SingleTraceOutputModifier
• Size() : QuadraturePointsGroup< DIM >, VertexElementMap
• SkipHeaderLines() : AbstractFileComparison
• SlidingBoundaryCondition() : SlidingBoundaryCondition< DIM >
• SloughingCellKiller() : SloughingCellKiller< DIM >
• SmoothStructureTensors() : PapillaryFibreCalculator
• SolidMechanicsProblemDefinition() : SolidMechanicsProblemDefinition< DIM >
• Solve() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, AbstractCardiacMechanicsSolverInterface< DIM >, AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >, AbstractCvodeSystem, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, AbstractIvpOdeSolver, AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, AbstractNonlinearElasticitySolver< DIM >, AbstractNonlinearSolver, AbstractOneStepIvpOdeSolver, AbstractStaticLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >, CardiacNewtonSolver< SIZE, CELLTYPE >, CvodeAdaptor, ExplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, LinearSystem, RungeKuttaFehlbergIvpOdeSolver, SimpleNewtonNonlinearSolver, SimplePetscNonlinearSolver, StokesFlowSolver< DIM >
• SolveAndUpdateState() : AbstractBackwardEulerCardiacCell< SIZE >, AbstractBackwardEulerCardiacCell< 0u >, AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell, AbstractGeneralizedRushLarsenCardiacCell, AbstractRushLarsenCardiacCell
• SolveAndUpdateStateVariable() : AbstractCellCycleModelOdeSolver, AbstractIvpOdeSolver
• SolveAndWriteResultsToFile() : LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SolveBoundaryElementMapping() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PottsMesh< DIM >, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
• SolveCellSystems() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >, ExtendedBidomainTissue< SPACE_DIM >
• SolveElementMapping() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PottsMesh< DIM >, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
• SolveLinearSystem() : BackwardEulerIvpOdeSolver, CardiacNewtonSolver< SIZE, CELLTYPE >
• SolveNavierStokesSpectral() : ImmersedBoundarySimulationModifier< DIM >
• SolveNodeMapping() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, NodesOnlyMesh< SPACE_DIM >, PottsMesh< DIM >, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
• SolveNonSnes() : AbstractNonlinearElasticitySolver< DIM >
• SolveOdeToTime() : CellCycleModelOdeHandler
• SolveOneTimeStep() : OdeLinearSystemSolver
• SolveSnes() : AbstractNonlinearElasticitySolver< DIM >
• SPACING : ColumnDataWriter
• SPATIAL_BLOCK_SIZE_ELEMENTAL : AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >, ContinuumMechanicsNeumannBcsAssembler< DIM >, StokesFlowAssembler< DIM >
• SpecifyOrdering() : CellPropertyRegistry
• SphereGeometryBoundaryCondition() : SphereGeometryBoundaryCondition< DIM >
• SplitEdge() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• SplitEdgeSrn() : AbstractSrnModel, DeltaNotchEdgeSrnModel
• SplitLongEdges() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• SpringIterator() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
• SpringsBegin() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• SpringsEnd() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• StandardNormalRandomDeviate() : RandomNumberGenerator
• StandardStartup() : ExecutableSupport
• StartApoptosis() : Cell
• StartApoptosisOnCell() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• StartupWithoutShowingCopyright() : ExecutableSupport
• SteadyStateRestitutionStimulus() : SteadyStateRestitutionStimulus
• SteadyStateRunner() : SteadyStateRunner
• StemCellProliferativeType() : StemCellProliferativeType
• STENCIL_SIZE : AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >, CompressibleNonlinearElasticitySolver< DIM >, ContinuumMechanicsNeumannBcsAssembler< DIM >, IncompressibleNonlinearElasticitySolver< DIM >
• StepSizeException() : StepSizeException
• StiffnessMatrixAssembler() : StiffnessMatrixAssembler< ELEMENT_DIM, SPACE_DIM >
• Stimulus : AbstractUntemplatedConvergenceTester
• StimulusBoundaryCondition() : StimulusBoundaryCondition< SPACE_DIM >
• StochasticOxygenBasedCellCycleModel() : StochasticOxygenBasedCellCycleModel
• StochasticWntCellCycleModel() : StochasticWntCellCycleModel
• StokesFlowAssembler() : StokesFlowAssembler< DIM >
• StokesFlowPreconditionerAssembler() : StokesFlowPreconditionerAssembler< DIM >
• StokesFlowProblemDefinition() : StokesFlowProblemDefinition< DIM >
• StokesFlowSolver() : StokesFlowSolver< DIM >
• StopFaking() : FileFinder
• StoppingEventHasOccurred() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• StoppingEventOccurred() : AbstractCellCycleModelOdeSolver, AbstractIvpOdeSolver
• StreeterFibreGenerator() : StreeterFibreGenerator< SPACE_DIM >
• StressPerElementWriter() : StressPerElementWriter< DIM >
• Stretch : DataAtQuadraturePoint_
• StretchLastTimeStep : DataAtQuadraturePoint_
• Stripe() : DistributedVector::Stripe
• subsystemInformation : CombinedOdeSystemInformation::InstancePointers
• SuperellipseGenerator() : SuperellipseGenerator
• SuppressOutput() : AbstractSteadyStateRunner
• SurfaceAreaConstraintPottsUpdateRule() : SurfaceAreaConstraintPottsUpdateRule< DIM >
• SurfaceBasisFunction : AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SwitchOff() : Electrodes< DIM >
• SwitchOn() : Electrodes< DIM >
• SwitchWriteMode() : PetscMatTools
• SwitchWriteModeLhsMatrix() : LinearSystem