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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <NodeVelocityWriter.hpp>
Public Member Functions | |
NodeVelocityWriter () | |
virtual void | Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (ImmersedBoundaryCellPopulation< SPACE_DIM > *pCellPopulation) |
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AbstractCellPopulationWriter (const std::string &rFileName) | |
virtual void | WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
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AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
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virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing the velocities of the nodes associated with a cell population to file.
The output file is called nodevelocities.dat by default.
Definition at line 52 of file NodeVelocityWriter.hpp.
NodeVelocityWriter< ELEMENT_DIM, SPACE_DIM >::NodeVelocityWriter | ( | ) |
Default constructor.
Definition at line 46 of file NodeVelocityWriter.cpp.
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 64 of file NodeVelocityWriter.hpp.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is not defined for use with a CaBasedCellPopulation.
pCellPopulation | a pointer to the CaBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 97 of file NodeVelocityWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is not defined for use with a ImmersedBoundaryCellPopulation.
pCellPopulation | a pointer to the ImmersedBoundaryCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 186 of file NodeVelocityWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the location of each Node.
Outputs a line of space-separated values of the form: ... [node index] [node x-pos] [node y-pos] [node z-pos] [node x-vel] [node y-vel] [node z-vel]...
where z-pos and z-vel are used in 3 dimensions. Here the indexing of nodes is as given by the NodeIterator.
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the MeshBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 52 of file NodeVelocityWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellUsingLocationIndex(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetDampingConstant(), SimulationTime::GetTimeStep(), SimulationTime::Instance(), AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::IsGhostNode(), and MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::rGetMesh().
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virtual |
Visit the population and write the location of each Node.
Outputs a line of space-separated values of the form: ... [node index] [node x-pos] [node y-pos] [node z-pos] [node x-vel] [node y-vel] [node z-vel]...
where z-pos and z-vel are used in 3 dimensions. Here the indexing of nodes is as given by the NodeIterator.
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the NodeBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 103 of file NodeVelocityWriter.cpp.
References NodeBasedCellPopulation< DIM >::GetCellUsingLocationIndex(), AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetDampingConstant(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNodeIteratorBegin(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNodeIteratorEnd(), SimulationTime::GetTimeStep(), SimulationTime::Instance(), AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::IsGhostNode(), and NodeBasedCellPopulation< DIM >::rGetMesh().
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is not defined for use with a PottsBasedCellPopulation.
pCellPopulation | a pointer to the PottsBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 148 of file NodeVelocityWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the location of each Node.
Outputs a line of space-separated values of the form: ... [node index] [node x-pos] [node y-pos] [node z-pos] [node x-vel] [node y-vel] [node z-vel]...
where z-pos and z-vel are used in 3 dimensions. Here the indexing of nodes is as given by the NodeIterator.
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the VertexBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 154 of file NodeVelocityWriter.cpp.
References VertexBasedCellPopulation< DIM >::GetDampingConstant(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNodeIteratorBegin(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNodeIteratorEnd(), SimulationTime::GetTimeStep(), SimulationTime::Instance(), and VertexBasedCellPopulation< DIM >::rGetMesh().
Needed for serialization.
Definition at line 56 of file NodeVelocityWriter.hpp.