VertexBasedPopulationSrn< DIM > Class Template Reference

#include <VertexBasedPopulationSrn.hpp>

Collaboration diagram for VertexBasedPopulationSrn< DIM >:

Public Member Functions
	VertexBasedPopulationSrn ()
	~VertexBasedPopulationSrn ()
void	SetVertexCellPopulation (VertexBasedCellPopulation< DIM > *pCellPopulation)
void	UpdateSrnAfterBirthOrDeath (VertexElementMap &rElementMap)
void	RemapCellSrn (std::vector< AbstractSrnModelPtr > parentSrnEdges, CellSrnModel *pCellSrn, const EdgeRemapInfo &rEdgeChange)

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Private Attributes
VertexBasedCellPopulation< DIM > *	mpCellPopulation

Friends
class	boost::serialization::access

Detailed Description

template<unsigned DIM>
class VertexBasedPopulationSrn< DIM >

After topological rearrangments, e.g. T1-3, node merges, or edge splits due to mitosis, junctional SRNs must be updated accordingly. For example, after edge split due to mitosis a new SRN must be created that inherits modified model variables. This class deals with Cell SRN update after a topological change occurs to the cell.

Definition at line 59 of file VertexBasedPopulationSrn.hpp.

Constructor & Destructor Documentation

VertexBasedPopulationSrn()

template<unsigned DIM>

VertexBasedPopulationSrn< DIM >::VertexBasedPopulationSrn

(

)

Default constructor.

Definition at line 40 of file VertexBasedPopulationSrn.cpp.

~VertexBasedPopulationSrn()

template<unsigned DIM>

VertexBasedPopulationSrn< DIM >::~VertexBasedPopulationSrn

(

)

Destructor.

Definition at line 46 of file VertexBasedPopulationSrn.cpp.

Member Function Documentation

RemapCellSrn()

template<unsigned DIM>

void VertexBasedPopulationSrn< DIM >::RemapCellSrn	(	std::vector< AbstractSrnModelPtr >	parentSrnEdges,
		CellSrnModel *	pCellSrn,
		const EdgeRemapInfo &	rEdgeChange
	)

Remaps cell SRN. If an edge has not been modified, the old edge SRN is mapped to its junction. Otherwise, edge SRNs are updated according to the operation performed.

Parameters

parentSrnEdges	Edge SRNs before topology is changed
pCellSrn	pointer to CellSrnModel
rEdgeChange	Contains information about which edge changes occurred

Definition at line 133 of file VertexBasedPopulationSrn.cpp.

References CellSrnModel::AddEdgeSrn(), AbstractSrnModel::GetCell(), EdgeRemapInfo::GetEdgesMapping(), EdgeRemapInfo::GetEdgesStatus(), CellSrnModel::GetInteriorSrn(), CellSrnModel::GetNumEdgeSrn(), and EdgeRemapInfo::GetSplitProportions().

serialize()

template<unsigned DIM>

template<class Archive >

void VertexBasedPopulationSrn< DIM >::serialize ( Archive &  archive, const unsigned int  version  )

inlineprivate

Serialize the object and its member variables.

Note that serialization of the mesh and cells is handled by load/save_construct_data.

Note also that member data related to writers is not saved - output must be set up again by the caller after a restart.

Parameters

archive	the archive
version	the current version of this class

Definition at line 79 of file VertexBasedPopulationSrn.hpp.

SetVertexCellPopulation()

template<unsigned DIM>

void VertexBasedPopulationSrn< DIM >::SetVertexCellPopulation

(

VertexBasedCellPopulation< DIM > *

pCellPopulation

)

Set the cell population.

Parameters

pCellPopulation

pointer to a VertexBasedCellPopulation

Definition at line 51 of file VertexBasedPopulationSrn.cpp.

UpdateSrnAfterBirthOrDeath()

template<unsigned DIM>

void VertexBasedPopulationSrn< DIM >::UpdateSrnAfterBirthOrDeath

(

VertexElementMap &

rElementMap

)

This method iterates over edge operations performed on the mesh and calls on RemapCellSrn() with appropriate arguments

Parameters

rElementMap

the element map to take into account that some elements are deleted after an edge operation is recorded

Definition at line 57 of file VertexBasedPopulationSrn.cpp.

References CellSrnModel::GetEdges(), VertexElementMap::GetNewIndex(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::GetOperationRecorder(), VertexElementMap::IsDeleted(), and VertexBasedCellPopulation< DIM >::rGetMesh().

Friends And Related Symbol Documentation

boost::serialization::access

template<unsigned DIM>

friend class boost::serialization::access

friend

Definition at line 66 of file VertexBasedPopulationSrn.hpp.

Member Data Documentation

mpCellPopulation

template<unsigned DIM>

VertexBasedCellPopulation<DIM>* VertexBasedPopulationSrn< DIM >::mpCellPopulation

private

Pointer to a VertexBasedCellPopulation.

Definition at line 64 of file VertexBasedPopulationSrn.hpp.

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The documentation for this class was generated from the following files:

• cell_based/src/population/srn_update/VertexBasedPopulationSrn.hpp
• cell_based/src/population/srn_update/VertexBasedPopulationSrn.cpp