Here is a list of all documented functions with links to the class documentation for each member:
- g -
- gamma_distribution_v165() : boost::random::gamma_distribution_v165< RealType >
- GammaG1CellCycleModel() : GammaG1CellCycleModel
- GammaRandomDeviate() : RandomNumberGenerator
- GaussianQuadratureRule() : GaussianQuadratureRule< ELEMENT_DIM >
- GeneralisedLinearSpringForce() : GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GeneralPlaneStimulusCellFactory() : GeneralPlaneStimulusCellFactory< CELL, ELEMENT_DIM, SPACE_DIM >
- Generate() : CryptCellsGenerator< CELL_CYCLE_MODEL >
- GenerateBasic() : CellsGenerator< CELL_CYCLE_MODEL, DIM >
- GenerateBasicRandom() : CellsGenerator< CELL_CYCLE_MODEL, DIM >
- GenerateCellCycleTimeSequence() : CellCycleTimesGenerator
- GenerateEdgesFromElements() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GenerateFeMesh() : AbstractBoxDomainPdeModifier< DIM >, AbstractGrowingDomainPdeModifier< DIM >
- GenerateGivenLocationIndices() : CellsGenerator< CELL_CYCLE_MODEL, DIM >
- GenerateListOfDatasets() : AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
- GenerateMapIndex() : Edge< SPACE_DIM >
- GenerateNullBasis() : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >
- GenerateParallelCells() : ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >
- GenerateRemovalInformation() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GenerateStochasticG2Duration() : StochasticOxygenBasedCellCycleModel, StochasticWntCellCycleModel
- GenerateVectorsOfElementsStraddlingCylindricalPeriodicBoundaries() : Toroidal2dMesh
- GenerateVectorsOfElementsStraddlingPeriodicBoundaries() : Cylindrical2dMesh
- GenerateVectorsOfElementsStraddlingToroidalPeriodicBoundaries() : Toroidal2dMesh
- GenerateVerticesFromElementCircumcentres() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GenericEventHandler() : GenericEventHandler< NUM_EVENTS, CONCRETE >
- GeometricPartitioning() : NodePartitioner< ELEMENT_DIM, SPACE_DIM >
- Get() : CellPropertyRegistry, ProcessSpecificArchive< Archive >
- Get_d2W_dI1() : AbstractIsotropicCompressibleMaterialLaw< DIM >, AbstractIsotropicIncompressibleMaterialLaw< DIM >, CompressibleMooneyRivlinMaterialLaw< DIM >, ExponentialMaterialLaw< DIM >, MooneyRivlinMaterialLaw< DIM >, PolynomialMaterialLaw3d
- Get_d2W_dI1I2() : AbstractIsotropicCompressibleMaterialLaw< DIM >, AbstractIsotropicIncompressibleMaterialLaw< DIM >, CompressibleMooneyRivlinMaterialLaw< DIM >, ExponentialMaterialLaw< DIM >, MooneyRivlinMaterialLaw< DIM >, PolynomialMaterialLaw3d
- Get_d2W_dI1I3() : AbstractIsotropicCompressibleMaterialLaw< DIM >, CompressibleMooneyRivlinMaterialLaw< DIM >
- Get_d2W_dI2() : AbstractIsotropicCompressibleMaterialLaw< DIM >, AbstractIsotropicIncompressibleMaterialLaw< DIM >, CompressibleMooneyRivlinMaterialLaw< DIM >, ExponentialMaterialLaw< DIM >, MooneyRivlinMaterialLaw< DIM >, PolynomialMaterialLaw3d
- Get_d2W_dI2I3() : AbstractIsotropicCompressibleMaterialLaw< DIM >, CompressibleMooneyRivlinMaterialLaw< DIM >
- Get_d2W_dI3() : AbstractIsotropicCompressibleMaterialLaw< DIM >, CompressibleMooneyRivlinMaterialLaw< DIM >
- Get_dW_dI1() : AbstractIsotropicCompressibleMaterialLaw< DIM >, AbstractIsotropicIncompressibleMaterialLaw< DIM >, CompressibleMooneyRivlinMaterialLaw< DIM >, ExponentialMaterialLaw< DIM >, MooneyRivlinMaterialLaw< DIM >, PolynomialMaterialLaw3d
- Get_dW_dI2() : AbstractIsotropicCompressibleMaterialLaw< DIM >, AbstractIsotropicIncompressibleMaterialLaw< DIM >, CompressibleMooneyRivlinMaterialLaw< DIM >, ExponentialMaterialLaw< DIM >, MooneyRivlinMaterialLaw< DIM >, PolynomialMaterialLaw3d
- Get_dW_dI3() : AbstractIsotropicCompressibleMaterialLaw< DIM >, CompressibleMooneyRivlinMaterialLaw< DIM >
- GetA() : CompressibleExponentialLaw< DIM >, CryptProjectionForce, ExponentialMaterialLaw< DIM >, OdeSystemForCoupledHeatEquationWithSource, SchmidCostaExponentialLaw2d
- GetAbsoluteMovementThreshold() : AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetAbsolutePath() : FileFinder
- GetAbsoluteTemperature() : DiffusionForce< DIM >
- GetAbsoluteTolerance() : AbstractCvodeSystem, CvodeAdaptor, HeartConfig
- GetActionPotentialAmplitudes() : CellProperties
- GetActiveTension() : AbstractContractionModel, ConstantActiveTension, FakeBathContractionModel, Kerchoffs2003ContractionModel, Nash2004ContractionModel, NhsContractionModel, NonPhysiologicalContractionModel
- GetActiveTensionAndTensionDerivs() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, ExplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
- GetAdditiveNormalNoise() : AbstractImmersedBoundaryForce< DIM >, ImmersedBoundarySimulationModifier< DIM >
- GetAdhesionEnergyParameter() : BuskeAdhesiveForce< DIM >
- GetAdhesionParameter() : NagaiHondaDifferentialAdhesionForce< DIM >, NagaiHondaForce< DIM >
- GetAge() : AbstractCellCycleModel, Cell
- GetAgeToStartGrowing() : TargetAreaLinearGrowthModifier< DIM >
- GetAllActionPotentialDurations() : CellProperties
- GetAllAxi() : FibreReader< DIM >
- GetAllNodeIndices() : NodesOnlyMesh< SPACE_DIM >
- GetAllOrtho() : FibreReader< DIM >
- GetAlpha() : PolynomialMaterialLaw3d
- GetAmFirstCell() : ExtendedBidomainTissue< SPACE_DIM >
- GetAmGap() : ExtendedBidomainTissue< SPACE_DIM >
- GetAmSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
- GetAncestor() : Cell, CellAncestor
- GetAngleBetweenNodes() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetAnyVariable() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell, AbstractParameterisedSystem< VECTOR >, OdeSolution
- GetAnyVariableIndex() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetAnyVariableUnits() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetApdMaps() : HeartConfig
- GetApoptosisTime() : Cell
- GetApoptoticSpringCompressionStiffness() : LinearSpringWithVariableSpringConstantsForce< DIM >
- GetApoptoticSpringTensionStiffness() : LinearSpringWithVariableSpringConstantsForce< DIM >
- GetApplyCrossFibreTension() : ElectroMechanicsProblemDefinition< DIM >
- GetApplyExtrinsicPullToAllNodes() : ExtrinsicPullModifier< DIM >
- GetArchiveBoundingBox() : ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >
- GetArchiveDirectory() : ArchiveLocationInfo
- GetArchivedSimulationDir() : HeartConfig
- GetArchiveRelativePath() : ArchiveLocationInfo
- GetAreaBasedDampingConstantParameter() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetAreaElasticityParameter() : FarhadifarForce< DIM >
- GetAreaGradientOfElementAtNode() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetAreLocalBoxesSet() : DistributedBoxCollection< DIM >
- GetAspectRatio() : PottsElement< DIM >
- GetAssociatedElementIndex() : FluidSource< SPACE_DIM >
- GetAttribute() : AbstractElement< ELEMENT_DIM, SPACE_DIM >, AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetAveragedThicknessLocalNode() : StreeterFibreGenerator< SPACE_DIM >
- GetAverageNodeSpacing() : ImmersedBoundaryElement< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryElement< 1, SPACE_DIM >
- GetAverageNodeSpacingOfElement() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetAverageNodeSpacingOfLamina() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetAverageStemCellCycleTime() : AbstractCellCycleModel, AbstractPhaseBasedCellCycleModel, AbstractWntOdeBasedCellCycleModel, AlwaysDivideCellCycleModel, BernoulliTrialCellCycleModel, BiasedBernoulliTrialCellCycleModel, LabelDependentBernoulliTrialCellCycleModel, NoCellCycleModel, TysonNovakCellCycleModel, UniformCellCycleModel
- GetAverageStressPerElement() : AbstractNonlinearElasticitySolver< DIM >
- GetAverageTransitCellCycleTime() : AbstractCellCycleModel, AbstractPhaseBasedCellCycleModel, AbstractWntOdeBasedCellCycleModel, AlwaysDivideCellCycleModel, BernoulliTrialCellCycleModel, BiasedBernoulliTrialCellCycleModel, LabelDependentBernoulliTrialCellCycleModel, NoCellCycleModel, TysonNovakCellCycleModel, UniformCellCycleModel
- GetB() : CompressibleExponentialLaw< DIM >, CryptProjectionForce, ExponentialMaterialLaw< DIM >, SchmidCostaExponentialLaw2d
- GetBathConductivity() : HeartConfig
- GetBetaCateninConcentration() : SingleOdeWntCellCycleModel
- GetBetaCateninDivisionThreshold() : SingleOdeWntCellCycleModel
- GetBetaCatSpringScaler() : LinearSpringWithVariableSpringConstantsForce< DIM >
- GetBidomainTissue() : BidomainProblem< DIM >
- GetBirthTime() : AbstractCellCycleModel, Cell
- GetBloodLust() : TargetedCellKiller< DIM >
- GetBodyForce() : ContinuumMechanicsProblemDefinition< DIM >
- GetBodyForceType() : ContinuumMechanicsProblemDefinition< DIM >
- GetBoolCorrespondingToOption() : CommandLineArguments
- GetBoundaryCondition() : AbstractPdeModifier< DIM >
- GetBoundaryConditions() : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryConditionsContainer() : Electrodes< DIM >
- GetBoundaryElement() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryElementIteratorBegin() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryElementIteratorEnd() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryLineTensionParameter() : FarhadifarForce< DIM >, PlanarPolarisedFarhadifarForce< DIM >
- GetBoundaryNodeIteratorBegin() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryNodeIteratorEnd() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundedVoroniTesselationLengthCutoff() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetBoundVoronoiTessellation() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetBoxCollection() : NodesOnlyMesh< SPACE_DIM >
- GetBoxWidth() : DistributedBoxCollection< DIM >
- GetBuilderUnameInfo() : ChasteBuildInfo
- GetBuildInfo() : ExecutableSupport
- GetBuildInformation() : ChasteBuildInfo
- GetBuildTime() : ChasteBuildInfo
- GetC() : Goldbeter1991SrnModel
- GetC1() : CompressibleMooneyRivlinMaterialLaw< DIM >, MooneyRivlinMaterialLaw< DIM >
- GetC2() : MooneyRivlinMaterialLaw< DIM >
- GetC3() : CompressibleMooneyRivlinMaterialLaw< DIM >
- GetCaBasedDivisionRule() : CaBasedCellPopulation< DIM >
- GetCableElement() : MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
- GetCableElementIteratorBegin() : MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
- GetCableElementIteratorEnd() : MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
- GetCablesAtNode() : MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
- GetCalciumTroponinValue() : NhsContractionModel
- GetCallCount() : MockEulerIvpOdeSolver
- GetCapacitance() : HeartConfig
- GetCarbonMonoxideScaleFactor() : CorriasBuistICCModified, CorriasBuistSMCModified
- GetCardiacCell() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- GetCardiacCellOrHaloCell() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- GetCardiacSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
- GetCell() : AbstractCellCycleModel, AbstractSrnModel
- GetCellA() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
- GetCellAncestors() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCellB() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
- GetCellBoundaryAdhesionEnergy() : AdhesionPottsUpdateRule< DIM >, DifferentialAdhesionPottsUpdateRule< DIM >
- GetCellBoundaryAdhesionEnergyParameter() : AdhesionPottsUpdateRule< DIM >
- GetCellCellAdhesionEnergy() : AdhesionPottsUpdateRule< DIM >, DifferentialAdhesionPottsUpdateRule< DIM >
- GetCellCellAdhesionEnergyParameter() : AdhesionPottsUpdateRule< DIM >
- GetCellCount() : AbstractCellProperty
- GetCellCycleDuration() : AbstractSimpleCellCycleModel
- GetCellCycleModel() : Cell
- GetCellCyclePhaseCount() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCellData() : Cell, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetCellDataForVtkOutput() : AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >, CellAgesWriter< ELEMENT_DIM, SPACE_DIM >, CellAncestorWriter< ELEMENT_DIM, SPACE_DIM >, CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >, CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >, CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >, CellDeltaNotchWriter< ELEMENT_DIM, SPACE_DIM >, CellIdWriter< ELEMENT_DIM, SPACE_DIM >, CellLabelWriter< ELEMENT_DIM, SPACE_DIM >, CellLocationIndexWriter< ELEMENT_DIM, SPACE_DIM >, CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativePhasesWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >, CellRadiusWriter< ELEMENT_DIM, SPACE_DIM >, CellRosetteRankWriter< ELEMENT_DIM, SPACE_DIM >, CellVolumesWriter< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryBoundaryCellWriter< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryNeighbourNumberWriter< ELEMENT_DIM, SPACE_DIM >, LegacyCellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >
- GetCellDataItemAtPdeNode() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
- GetCellDataVariableName() : CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >
- GetCellDivisionInfo() : VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >
- GetCellEdgeData() : Cell
- GetCellHeterogeneities() : HeartConfig
- GetCellId() : Cell, CellId
- GetCellIdsOfT2Swaps() : VertexBasedCellPopulation< DIM >
- GetCellLocationIndices() : HoneycombMeshGenerator
- GetCellMutationStateCount() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCellNodePair() : NodeBasedCellPopulation< DIM >
- GetCellPopulation() : AbstractCellKiller< SPACE_DIM >, AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
- GetCellProliferativeType() : Cell
- GetCellProliferativeTypeCount() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCellPropertyRegistry() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, CellPropertyCollection
- GetCellRearrangementRatio() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetCellRearrangementThreshold() : ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetCellsUsingLocationIndex() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCellToCellSpringConst() : ImmersedBoundaryLinearDifferentialAdhesionForce< DIM >
- GetCellUsingLocationIndex() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >
- GetCellVecData() : Cell
- GetCentre() : RadialSloughingCellKiller
- GetCentreBasedDivisionRule() : AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCentroidOfCellPopulation() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCentroidOfElement() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PottsMesh< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetCharacteristicNodeSpacing() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetChasteCodegenVersion() : ChasteBuildInfo
- GetChasteTestOutputDirectory() : OutputFileHandler
- GetCheckForInternalIntersections() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetCheckForT3Swaps() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetCheckpointSimulation() : HeartConfig
- GetCheckpointTimestep() : HeartConfig
- GetChemotacticForceMagnitude() : ChemotacticForce< DIM >
- GetChildElements() : XmlTools
- GetCircularMesh() : HoneycombMeshGenerator
- GetCmFirstCell() : ExtendedBidomainTissue< SPACE_DIM >
- GetCmSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
- GetCoarseMesh() : FineCoarseMeshPair< DIM >
- GetCoefficient() : AveragedSourceEllipticPde< DIM >, CellwiseSourceEllipticPde< DIM >, UniformSourceEllipticPde< DIM >, UniformSourceParabolicPde< DIM >
- GetColour() : AbstractCellMutationState, AbstractCellProliferativeType, ApoptoticCellProperty, CellLabel
- GetCommonArchive() : ArchiveOpener< Archive, Stream >
- GetCompilerFlags() : ChasteBuildInfo
- GetCompilerType() : ChasteBuildInfo
- GetCompilerVersion() : ChasteBuildInfo
- GetCompressibilityParam() : CompressibleExponentialLaw< DIM >
- GetCompressibilityType() : SolidMechanicsProblemDefinition< DIM >
- GetCompressibleMaterialLaw() : SolidMechanicsProblemDefinition< DIM >
- GetCompressionEnergyParameter() : BuskeCompressionForce< DIM >
- GetConcentrationParameter() : VonMisesVertexBasedDivisionRule< SPACE_DIM >
- GetConductionVelocityMaps() : HeartConfig
- GetConductivityHeterogeneities() : HeartConfig
- GetConductivityHeterogeneitiesProvided() : HeartConfig
- GetConductivityMedia() : HeartConfig
- GetConstantBodyForce() : ContinuumMechanicsProblemDefinition< DIM >
- GetContainingElementIndex() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetContainingElementIndexWithInitialGuess() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetContainingElementIndices() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetContractionCellFactory() : ElectroMechanicsProblemDefinition< DIM >
- GetContractionModelOdeTimestep() : ElectroMechanicsProblemDefinition< DIM >
- GetCorrespondingCylindricalNodeIndex() : Toroidal2dMesh
- GetCorrespondingNodeIndex() : Cylindrical2dMesh
- GetCorrespondingToroidalNodeIndex() : Toroidal2dMesh
- GetCreateFibre() : HeartConfig
- GetCreateMesh() : HeartConfig
- GetCreateSheet() : HeartConfig
- GetCreateSlab() : HeartConfig
- GetCriticalHypoxicDuration() : SimpleOxygenBasedCellCycleModel
- GetCryptLength() : WntConcentration< DIM >
- GetCryptProjectionParameterA() : WntConcentration< DIM >
- GetCryptProjectionParameterB() : WntConcentration< DIM >
- GetCryptSection() : CryptProjectionStatistics, CryptStatistics
- GetCryptSectionPeriodic() : CryptStatistics
- GetCurrentCellCyclePhase() : AbstractPhaseBasedCellCycleModel
- GetCurrentHypoxiaOnsetTime() : SimpleOxygenBasedCellCycleModel
- GetCurrentHypoxicDuration() : SimpleOxygenBasedCellCycleModel
- GetCurrentQuiescentDuration() : ContactInhibitionCellCycleModel
- GetCurrentQuiescentOnsetTime() : ContactInhibitionCellCycleModel
- GetCurrentSolutionOrGuessValue() : AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
- GetCurrentTime() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, ChasteBuildInfo
- GetCutOffLength() : AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >
- GetCycleLengths() : CellProperties
- GetCylindricalMesh() : CylindricalHoneycombMeshGenerator, CylindricalHoneycombVertexMeshGenerator
- GetCytoplasmicBetaCateninLevel() : AbstractVanLeeuwen2009WntSwatCellCycleModel
- GetDampingConstant() : AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, VertexBasedCellPopulation< DIM >
- GetDampingConstantMutant() : AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetDampingConstantNormal() : AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetDataReader() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetDeathProbabilityInAnHour() : RandomCellKiller< DIM >
- GetDefaultIonicModel() : HeartConfig
- GetDefaultTimeStep() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractOnLatticeCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
- GetDeformationAffectsCellModels() : ElectroMechanicsProblemDefinition< DIM >
- GetDeformationAffectsConductivity() : ElectroMechanicsProblemDefinition< DIM >
- GetDeformationEnergyParameter() : BuskeElasticForce< DIM >, SurfaceAreaConstraintPottsUpdateRule< DIM >, VolumeConstraintPottsUpdateRule< DIM >
- GetDelaunayNodeIndexCorrespondingToVoronoiElementIndex() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetDelta() : DeltaNotchEdgeSrnModel, DeltaNotchInteriorSrnModel, DeltaNotchSrnModel
- GetDensity() : ContinuumMechanicsProblemDefinition< DIM >
- GetDerivedQuantityIndex() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetDerivedQuantityUnits() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetDiffusionParameter() : DiffusionCaUpdateRule< DIM >
- GetDiffusionScalingConstant() : DiffusionForce< DIM >
- GetDimension() : AbstractCellCycleModel
- GetDirichletBCValue() : AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetDistanceBetweenNodes() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetDistanceForT3SwapChecking() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetDistanceToEndo() : HeartGeometryInformation< SPACE_DIM >
- GetDistanceToEpi() : HeartGeometryInformation< SPACE_DIM >
- GetDistributedVectorFactory() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetDivisionProbability() : BernoulliTrialCellCycleModel, LabelDependentBernoulliTrialCellCycleModel
- GetDivisionsInformation() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetDoCacheReplication() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- GetDomain() : HeartConfig
- GetDomainDepth() : HoneycombMeshGenerator
- GetDomainWidth() : HoneycombMeshGenerator
- GetDoubleCorrespondingToOption() : CommandLineArguments
- GetDoublesCorrespondingToOption() : CommandLineArguments
- GetDrugDose() : HeartConfig
- GetDt() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >, CellCycleModelOdeHandler
- GetDuration() : RegularStimulus
- GetEdge() : EdgeHelper< SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetEdgeData() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetEdgeFromNodes() : EdgeHelper< SPACE_DIM >
- GetEdgeGlobalIndex() : MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >
- GetEdgeLength() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetEdgeLocalIndex() : AbstractSrnModel
- GetEdgeOperations() : VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >
- GetEdges() : CellSrnModel
- GetEdgesMapping() : EdgeRemapInfo
- GetEdgeSrn() : CellSrnModel
- GetEdgesStatus() : EdgeRemapInfo
- GetElapsedTime() : GenericEventHandler< NUM_EVENTS, CONCRETE >, Timer
- GetElapsedTimeImpl() : GenericEventHandler< NUM_EVENTS, CONCRETE >
- GetElectrodeParameters() : HeartConfig
- GetElement() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PetscMatTools, PetscVecTools, PottsBasedCellPopulation< DIM >, PottsMesh< DIM >, VertexBasedCellPopulation< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementCentroidStrain() : AbstractNonlinearElasticitySolver< DIM >
- GetElementCorrespondingToCell() : ImmersedBoundaryCellPopulation< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
- GetElementData() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetElementDivisionSpacing() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementIndex() : EdgeOperation
- GetElementIndex2() : EdgeOperation
- GetElementIteratorBegin() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PottsMesh< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementIteratorEnd() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PottsMesh< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementRestLength() : ImmersedBoundaryLinearMembraneForce< DIM >, ImmersedBoundaryMorseMembraneForce< DIM >
- GetElementSpringConst() : ImmersedBoundaryLinearMembraneForce< DIM >
- GetElementTessellation() : PottsBasedCellPopulation< DIM >
- GetElementWellDepth() : ImmersedBoundaryMorseMembraneForce< DIM >
- GetElongationShapeFactorOfElement() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetEndoLayerFraction() : HeartConfig
- GetEndoLayerIndex() : HeartConfig
- GetEpiLayerFraction() : HeartConfig
- GetEpiLayerIndex() : HeartConfig
- GetEquilibriumVolume() : ContactInhibitionCellCycleModel
- GetEvaluateNumItsEveryNSolves() : HeartConfig
- GetExpectedOneStepLocationAM2() : PopulationTestingForce< ELEMENT_DIM, SPACE_DIM >
- GetExpectedOneStepLocationBE() : PopulationTestingForce< ELEMENT_DIM, SPACE_DIM >
- GetExpectedOneStepLocationFE() : PopulationTestingForce< ELEMENT_DIM, SPACE_DIM >
- GetExpectedOneStepLocationRK4() : PopulationTestingForce< ELEMENT_DIM, SPACE_DIM >
- GetExperimentalVoltageAtTimeT() : AbstractCvodeCellWithDataClamp
- GetExtendedBidomainTissue() : ExtendedBidomainProblem< DIM >
- GetExtension() : FileFinder
- GetExtracellularConductivities() : HeartConfig
- GetExtracellularStimulus() : ExtendedBidomainTissue< SPACE_DIM >
- GetExtremalAngles() : DiscreteSystemForceCalculator
- GetFace() : VertexElement< ELEMENT_DIM, SPACE_DIM >, VertexElement< 1, SPACE_DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetFaceData() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetFactory() : DistributedVector, DistributedVector::Stripe
- GetFakeIccStimulusPresent() : CorriasBuistSMCModified
- GetFeMesh() : AbstractPdeModifier< DIM >
- GetFibreLength() : HeartConfig
- GetFibreMaxAngle() : StreeterFibreGenerator< SPACE_DIM >
- GetFibreSheetAndNormalMatrix() : FibreReader< DIM >
- GetFibreSheetDirectionsDefinedPerQuadraturePoint() : ElectroMechanicsProblemDefinition< DIM >
- GetFibreSheetDirectionsFile() : ElectroMechanicsProblemDefinition< DIM >
- GetFibreVector() : FibreReader< DIM >
- GetFieldWidth() : ColumnDataReader
- GetFileName() : AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
- GetFineMesh() : FineCoarseMeshPair< DIM >
- GetFirstAttribute() : ElementAttributes< ELEMENT_DIM, SPACE_DIM >
- GetFluidSource() : ImmersedBoundaryElement< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryElement< 1, SPACE_DIM >
- GetForceReset() : AbstractCvodeSystem
- GetForceStrength() : VertexCryptBoundaryForce< DIM >
- GetFreeVariableName() : AbstractOdeSystemInformation
- GetFreeVariableUnits() : AbstractOdeSystemInformation
- GetG1Duration() : AbstractPhaseBasedCellCycleModel
- GetG2Duration() : AbstractPhaseBasedCellCycleModel, StochasticOxygenBasedCellCycleModel, StochasticWntCellCycleModel
- GetGeneration() : AbstractSimpleGenerationalCellCycleModel
- GetGGap() : ExtendedBidomainTissue< SPACE_DIM >
- GetGhostNodeIndices() : MeshBasedCellPopulationWithGhostNodes< DIM >
- GetGridIndices() : ObsoleteBoxCollection< DIM >
- GetGrowthDuration() : NormallyDistributedTargetAreaModifier< DIM >, SimpleTargetAreaModifier< DIM >
- GetGrowthRate() : TargetAreaLinearGrowthModifier< DIM >
- GetHaloNodeIndices() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetHaloNodeIteratorBegin() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetHaloNodeIteratorEnd() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetHaloOffset() : Cylindrical2dMesh
- GetHaloScalingFactor() : Cylindrical2dMesh
- GetHasBath() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, BidomainProblem< DIM >, ExtendedBidomainProblem< DIM >
- GetHeartGeometryInformation() : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
- GetHeartRegion() : HeartGeometryInformation< SPACE_DIM >
- GetHeightOfTopSurface() : SuperellipseGenerator
- GetHeterotypicSpringConstantMultiplier() : DifferentialAdhesionGeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GetHigh() : DistributedVector, DistributedVectorFactory
- GetHomotypicLabelledSpringConstantMultiplier() : DifferentialAdhesionGeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GetHypothesis() : VanLeeuwen2009WntSwatCellCycleOdeSystem
- GetHypoxicConcentration() : SimpleOxygenBasedCellCycleModel
- GetIc50Values() : HeartConfig
- GetIdealTimeStep() : TimeStepper
- GetIdentifier() : Identifiable
- GetIIonic() : AbstractCardiacCellInterface, CML_noble_varghese_kohl_noble_1998_basic_with_sac, CorriasBuistICCModified, CorriasBuistSMCModified, FakeBathCell, FitzHughNagumo1961OdeSystem
- GetImmersedBoundaryDivisionRule() : ImmersedBoundaryCellPopulation< DIM >
- GetIncompleteNodeMap() : AbstractHdf5Access
- GetIncompressibleMaterialLaw() : SolidMechanicsProblemDefinition< DIM >
- GetIndex() : AbstractElement< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >::ElementIterator, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >::NodeIterator, Edge< SPACE_DIM >, FluidSource< SPACE_DIM >, Node< SPACE_DIM >
- GetIndexForArgument() : CommandLineArguments
- GetInitialConditions() : AbstractOdeSystemInformation, AbstractParameterisedSystem< VECTOR >
- GetInstanceOfMismatchedBoundaryNodes() : Cylindrical2dMesh, Toroidal2dMesh
- GetIntCorrespondingToOption() : CommandLineArguments
- GetIntegrand() : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetInteractionDistance() : ImmersedBoundaryCellPopulation< DIM >
- GetInteriorDelta() : DeltaNotchEdgeSrnModel
- GetInteriorNotch() : DeltaNotchEdgeSrnModel
- GetInteriorSrn() : CellSrnModel
- GetInterNodeSpace() : HeartConfig
- GetIntersectionOfEdgeWithBoundary() : ImmersedBoundaryMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetIntracellularAreaStimulus() : AbstractCardiacCellInterface
- GetIntracellularCalciumConcentration() : AbstractCardiacCellInterface, CML_noble_varghese_kohl_noble_1998_basic_with_sac, FakeBathCell
- GetIntracellularConductivities() : HeartConfig
- GetIntracellularConductivitiesSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
- GetIntracellularStimulus() : AbstractCardiacCellInterface
- GetIntrinsicSpacing() : ImmersedBoundaryCellPopulation< DIM >
- GetIntsCorrespondingToOption() : CommandLineArguments
- GetInverseJacobianForElement() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetIonicModelRegions() : HeartConfig
- GetIsDirRelativeToChasteTestOutput() : ArchiveLocationInfo
- GetIsPeriodicAcrossProcs() : DistributedBoxCollection< DIM >
- GetIsPeriodicAcrossProcsFromBoxCollection() : NodesOnlyMesh< SPACE_DIM >
- GetIsPeriodicAllDims() : DistributedBoxCollection< DIM >
- GetIsPeriodicInX() : DistributedBoxCollection< DIM >
- GetIsPeriodicInY() : DistributedBoxCollection< DIM >
- GetIsPeriodicInZ() : DistributedBoxCollection< DIM >
- GetItem() : CellData, CellEdgeData, CellVecData
- GetItemAtIndex() : CellEdgeData
- GetIterateRandomlyOverUpdateRuleCollection() : AbstractOnLatticeCellPopulation< DIM >
- GetJacobianForElement() : NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetKeyingVariableNames() : AbstractLookupTableCollection
- GetKeys() : CellData, CellEdgeData, CellVecData
- GetKSPPreconditioner() : HeartConfig
- GetKSPSolver() : HeartConfig
- GetLabelledCellBoundaryAdhesionEnergyParameter() : DifferentialAdhesionPottsUpdateRule< DIM >
- GetLabelledCellCellAdhesionEnergyParameter() : DifferentialAdhesionPottsUpdateRule< DIM >
- GetLabelledCellLabelledCellAdhesionEnergyParameter() : DifferentialAdhesionPottsUpdateRule< DIM >
- GetLabelledCellToCellSpringConst() : ImmersedBoundaryLinearDifferentialAdhesionForce< DIM >
- GetLabelledCellToLabelledCellSpringConst() : ImmersedBoundaryLinearDifferentialAdhesionForce< DIM >
- GetLabelledDivisionProbability() : LabelDependentBernoulliTrialCellCycleModel
- GetLamina() : ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetLaminaIteratorBegin() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetLaminaIteratorEnd() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetLaminaRestLength() : ImmersedBoundaryLinearMembraneForce< DIM >, ImmersedBoundaryMorseMembraneForce< DIM >
- GetLaminaRestLengthMult() : ImmersedBoundaryLinearInteractionForce< DIM >, ImmersedBoundaryMorseInteractionForce< DIM >
- GetLaminaSpringConst() : ImmersedBoundaryLinearMembraneForce< DIM >
- GetLaminaSpringConstMult() : ImmersedBoundaryLinearInteractionForce< DIM >
- GetLaminaWellDepth() : ImmersedBoundaryMorseMembraneForce< DIM >
- GetLaminaWellDepthMult() : ImmersedBoundaryMorseInteractionForce< DIM >
- GetLastActionPotentialAmplitude() : CellProperties
- GetLastActionPotentialDuration() : CellProperties
- GetLastCompleteMaxUpstrokeVelocity() : CellProperties
- GetLastCompletePeakPotential() : CellProperties
- GetLastMaxUpstrokeVelocity() : CellProperties
- GetLastPeakPotential() : CellProperties
- GetLastRestingPotential() : CellProperties
- GetLastStepSize() : AbstractCvodeSystem, CvodeAdaptor
- GetLastT2SwapLocation() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetLeafName() : FileFinder
- GetLeafNameNoExtension() : FileFinder
- GetLhsMatrix() : LinearSystem
- GetLicenceText() : ChasteBuildInfo
- GetLinearIndex() : ObsoleteBoxCollection< DIM >, UniformGridRandomFieldGenerator< SPACE_DIM >
- GetLinearSystem() : AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetLineTensionParameter() : FarhadifarForce< DIM >, PlanarPolarisedFarhadifarForce< DIM >
- GetLoadableModulePath() : DynamicCellModelLoader
- GetLoader() : AbstractDynamicallyLoadableEntity, DynamicModelLoaderRegistry
- GetLoadMesh() : HeartConfig
- GetLocalEdgeIndex() : MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >
- GetLocalExtremum() : DiscreteSystemForceCalculator
- GetLocalIndexForElementEdgeClosestToPoint() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetLocalOwnership() : DistributedVectorFactory
- GetLocationIndexUsingCell() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetLocationOfCellCentre() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
- GetLocationsOfIntersectionSwaps() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetLocationsOfT1Swaps() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetLocationsOfT2Swaps() : VertexBasedCellPopulation< DIM >
- GetLocationsOfT3Swaps() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetLongestAxis() : ChasteCuboid< SPACE_DIM >
- GetLookupTableCollection() : AbstractCardiacCellInterface
- GetLow() : DistributedVector, DistributedVectorFactory
- GetM() : Goldbeter1991SrnModel
- GetMagnitude() : RegularStimulus
- GetMagnitudeOfForce() : BuskeAdhesiveForce< DIM >, BuskeElasticForce< DIM >
- GetMajorReleaseNumber() : ChasteBuildInfo
- GetMapIndex() : Edge< SPACE_DIM >
- GetMatrixElement() : LinearSystem
- GetMatrixRowDistributed() : LinearSystem, PetscMatTools
- GetMatureCellTargetSurfaceArea() : SurfaceAreaConstraintPottsUpdateRule< DIM >
- GetMatureCellTargetVolume() : VolumeConstraintPottsUpdateRule< DIM >
- GetMaxCellCycleDuration() : UniformCellCycleModel
- GetMaxCellId() : CellId
- GetMaxCheckpointsOnDisk() : HeartConfig
- GetMaxDivisionProbability() : BiasedBernoulliTrialCellCycleModel
- GetMaxElementIndex() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetMaximumInteractionDistance() : NodesOnlyMesh< SPACE_DIM >
- GetMaximumNodeIndex() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, NodesOnlyMesh< SPACE_DIM >
- GetMaxLaminaIndex() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetMaxNodeIndex() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetMaxSteps() : AbstractCvodeSystem, CvodeAdaptor
- GetMaxTransitGenerations() : AbstractSimpleGenerationalCellCycleModel
- GetMaxUpstrokeVelocities() : CellProperties
- GetMaxUpstrokeVelocityMaps() : HeartConfig
- GetMDuration() : AbstractPhaseBasedCellCycleModel
- GetMeanNeighbouringDelta() : DeltaNotchSrnModel
- GetMeanParameter() : VonMisesVertexBasedDivisionRule< SPACE_DIM >
- GetMechanicsCutOffLength() : NodeBasedCellPopulation< DIM >
- GetMechanicsSolver() : CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
- GetMechanicsSolveTimestep() : ElectroMechanicsProblemDefinition< DIM >
- GetMeinekeDivisionRestingSpringLength() : GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GetMeinekeDivisionSeparation() : AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetMeinekeSpringGrowthDuration() : GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GetMeinekeSpringStiffness() : GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GetMembraneBoundBetaCateninLevel() : AbstractVanLeeuwen2009WntSwatCellCycleModel
- GetMesh() : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >, AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >, CylindricalHoneycombMeshGenerator, CylindricalHoneycombVertexMeshGenerator, HoneycombMeshGenerator, HoneycombVertexMeshGenerator, ImmersedBoundary2dArrays< DIM >, ImmersedBoundaryHoneycombMeshGenerator, ImmersedBoundaryPalisadeMeshGenerator, PottsMeshGenerator< DIM >, ToroidalHoneycombMeshGenerator, ToroidalHoneycombVertexMeshGenerator
- GetMeshFileBaseName() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMeshFilename() : ArchiveLocationInfo
- GetMeshForVtk() : Cylindrical2dVertexMesh, Toroidal2dVertexMesh, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetMeshName() : HeartConfig
- GetMeshNum() : SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- GetMeshPartitioning() : HeartConfig
- GetMessage() : Exception
- GetMidLayerFraction() : HeartConfig
- GetMidLayerIndex() : HeartConfig
- GetMinCellCycleDuration() : UniformCellCycleModel
- GetMinimalReset() : AbstractCvodeSystem
- GetMinimumDivisionAge() : BernoulliTrialCellCycleModel, BiasedBernoulliTrialCellCycleModel, LabelDependentBernoulliTrialCellCycleModel
- GetMinimumGapDuration() : AbstractPhaseBasedCellCycleModel
- GetMinNodeIndex() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMinorReleaseNumber() : ChasteBuildInfo
- GetMixedDimensionMesh() : AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >
- GetModifier() : AbstractCardiacCellWithModifiers< CARDIAC_CELL >
- GetMonodomainTissue() : MonodomainProblem< ELEMENT_DIM, SPACE_DIM >
- GetMooreNeighbouringNodeIndices() : PottsMesh< DIM >
- GetMutableMesh() : PottsBasedCellPopulation< DIM >
- GetMutationState() : Cell, Mirams2010WntOdeSystem, VanLeeuwen2009WntSwatCellCycleOdeSystem, WntCellCycleOdeSystem
- GetMyRank() : PetscTools
- GetNagaiHondaCellBoundaryAdhesionEnergyParameter() : NagaiHondaForce< DIM >
- GetNagaiHondaCellCellAdhesionEnergyParameter() : NagaiHondaForce< DIM >
- GetNagaiHondaDeformationEnergyParameter() : NagaiHondaForce< DIM >
- GetNagaiHondaLabelledCellBoundaryAdhesionEnergyParameter() : NagaiHondaDifferentialAdhesionForce< DIM >
- GetNagaiHondaLabelledCellCellAdhesionEnergyParameter() : NagaiHondaDifferentialAdhesionForce< DIM >
- GetNagaiHondaLabelledCellLabelledCellAdhesionEnergyParameter() : NagaiHondaDifferentialAdhesionForce< DIM >
- GetNagaiHondaMembraneSurfaceEnergyParameter() : NagaiHondaForce< DIM >
- GetNagaiHondaTargetAreaParameter() : NagaiHondaForce< DIM >
- GetNearestCorner() : ImmersedBoundaryMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNearestElementIndex() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNearestElementIndexFromTestElements() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNearestNodeIndex() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeighbourDist() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeighbouringDelta() : DeltaNotchEdgeSrnModel
- GetNeighbouringEdgeIndices() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, VertexBasedCellPopulation< DIM >
- GetNeighbouringElementAtEdgeIndex() : MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >
- GetNeighbouringElementIndices() : Edge< SPACE_DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PottsMesh< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeighbouringLocationIndices() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulationWithGhostNodes< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
- GetNeighbouringNodeIndices() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractOnLatticeCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeighbouringNodeNotAlsoInElement() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeighboursSetUp() : Node< SPACE_DIM >, NodeAttributes< SPACE_DIM >
- GetNeumannBCValue() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetNewIndex() : NodeMap, VertexElementMap
- GetNextActiveTension() : AbstractAlgebraicContractionModel, AbstractContractionModel, Kerchoffs2003ContractionModel, Nash2004ContractionModel, NhsContractionModel, NhsModelWithBackwardSolver
- GetNextAvailableIndex() : NodesOnlyMesh< SPACE_DIM >
- GetNextBoundaryElement() : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextCableElement() : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextCableElementData() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextCellCycleTime() : CellCycleTimesGenerator
- GetNextEdgeData() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextEdgeGradientOfElementAtNode() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNextElement() : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >, PottsMeshWriter< SPACE_DIM >, VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextElementData() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >, PottsMeshReader< SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextElementDataWithFaces() : VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextElementWithFaces() : VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextFaceData() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >, PottsMeshReader< SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextGridRow() : ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextImmersedBoundaryElement() : ImmersedBoundaryMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextImmersedBoundaryElementData() : ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextImmersedBoundaryLamina() : ImmersedBoundaryMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextImmersedBoundaryLaminaData() : ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextItemFromStream() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextLineFromStream() : ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >, PottsMeshReader< SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextNode() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshWriter< ELEMENT_DIM, SPACE_DIM >, PottsMeshReader< SPACE_DIM >, PottsMeshWriter< SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >, VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextTime() : PdeSimulationTime, TimeStepper
- GetNextTimeStep() : AbstractTimeAdaptivityController, TimeStepper
- GetNextWarningMessage() : Warnings
- GetNodalTimeTraceRequested() : HeartConfig
- GetNode() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractElement< ELEMENT_DIM, SPACE_DIM >, AbstractMesh< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, Edge< SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, PottsBasedCellPopulation< DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VertexBasedCellPopulation< DIM >
- GetNodeA() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
- GetNodeAttributes() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNodeB() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
- GetNodeCorrespondingToCell() : AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >
- GetNodeFromPrePermutationIndex() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNodeGlobalIndex() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetNodeIteratorBegin() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNodeIteratorEnd() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNodeLocalIndex() : MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >
- GetNodeLocation() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >, AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetNodeNeighbourUpdateFrequency() : ImmersedBoundarySimulationModifier< DIM >
- GetNodeOrHaloNode() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, NodesOnlyMesh< SPACE_DIM >
- GetNodesAtSurface() : HeartGeometryInformation< SPACE_DIM >
- GetNodesByComponentValue() : NonlinearElasticityTools< DIM >
- GetNodesWithinNeighbourhoodRadius() : NodeBasedCellPopulation< DIM >
- GetNoiseLengthScale() : ImmersedBoundarySimulationModifier< DIM >
- GetNoiseSkip() : ImmersedBoundarySimulationModifier< DIM >
- GetNoiseStrength() : ImmersedBoundarySimulationModifier< DIM >
- GetNormalNoiseMean() : AbstractImmersedBoundaryForce< DIM >
- GetNormalNoiseStdDev() : AbstractImmersedBoundaryForce< DIM >
- GetNormalPressure() : ContinuumMechanicsProblemDefinition< DIM >
- GetNotch() : DeltaNotchEdgeSrnModel, DeltaNotchInteriorSrnModel, DeltaNotchSrnModel
- GetNuclearBetaCateninLevel() : AbstractVanLeeuwen2009WntSwatCellCycleModel
- GetNumAllBoundaryElements() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumAllCells() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetNumAllElements() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PottsMesh< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumAllNodes() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumberOfAboveThresholdDepolarisationsForAllAps() : CellProperties
- GetNumberOfAboveThresholdDepolarisationsForLastAp() : CellProperties
- GetNumberOfArgumentsForOption() : CommandLineArguments
- GetNumberOfAttributes() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetNumberOfCells() : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >, AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >
- GetNumberOfDerivedQuantities() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetNumberOfParameters() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell, AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetNumberOfRows() : Hdf5DataReader
- GetNumberOfStateVariables() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell, AbstractUntemplatedParameterisedSystem
- GetNumberOfTables() : AbstractLookupTableCollection
- GetNumberOfTimeSteps() : OdeSolution
- GetNumBirths() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetNumBoundaryElements() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, MutableMesh< ELEMENT_DIM, SPACE_DIM >, Node< SPACE_DIM >
- GetNumBoundaryFaces() : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNumBoundaryNodes() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumBoxes() : DistributedBoxCollection< DIM >, ObsoleteBoxCollection< DIM >
- GetNumCableElementAttributes() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumCableElements() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumContainingElements() : Node< SPACE_DIM >
- GetNumDeaths() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetNumEdges() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, EdgeHelper< SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumEdgeSrn() : CellSrnModel
- GetNumElementAttributes() : AbstractElement< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >, PottsMeshReader< SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumElements() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, Edge< SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >, MutableMesh< ELEMENT_DIM, SPACE_DIM >, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >, PottsBasedCellPopulation< DIM >, PottsMesh< DIM >, PottsMeshReader< SPACE_DIM >, QuadraturePointsGroup< DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VertexBasedCellPopulation< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumericalMethod() : OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
- GetNumEvaluations() : AbstractSteadyStateRunner
- GetNumFaceAttributes() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumFaces() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >, PottsMeshReader< SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VertexElement< ELEMENT_DIM, SPACE_DIM >, VertexElement< 1, SPACE_DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumGridPtsX() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumGridPtsY() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumHaloNodes() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumIncrementsForInitialDeformation() : ElectroMechanicsProblemDefinition< DIM >
- GetNumItems() : CellData, CellEdgeData, CellVecData
- GetNumIterations() : LinearSystem
- GetNumLaminaAttributes() : ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumLaminas() : ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumLinesOfData() : FibreReader< DIM >
- GetNumLocalBoundaryElements() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalBoxes() : DistributedBoxCollection< DIM >
- GetNumLocalCableElements() : MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalElements() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalNodes() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalRows() : DistributedBoxCollection< DIM >
- GetNumNewtonIterations() : AbstractNonlinearElasticitySolver< DIM >
- GetNumNodeAttributes() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, Node< SPACE_DIM >
- GetNumNodes() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractElement< ELEMENT_DIM, SPACE_DIM >, AbstractMesh< ELEMENT_DIM, SPACE_DIM >, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, CmguiDeformedSolutionsWriter< DIM >, CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, Edge< SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, MutableMesh< ELEMENT_DIM, SPACE_DIM >, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, NodesOnlyMesh< SPACE_DIM >, PottsBasedCellPopulation< DIM >, PottsMesh< DIM >, PottsMeshReader< SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >, VertexBasedCellPopulation< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumProcs() : DistributedVectorFactory, PetscTools
- GetNumQuadPoints() : GaussianQuadratureRule< ELEMENT_DIM >
- GetNumQuadPointsPerElement() : QuadraturePointsGroup< DIM >
- GetNumRadialBins() : RadialCellDataDistributionWriter< ELEMENT_DIM, SPACE_DIM >
- GetNumRealCells() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetNumRowsOfBoxes() : DistributedBoxCollection< DIM >
- GetNumS2FrequencyValues() : S1S2Stimulus
- GetNumSlowValues() : AbstractCardiacCell
- GetNumSweepsPerTimestep() : PottsBasedCellPopulation< DIM >
- GetNumVertices() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, QuadraticMesh< DIM >
- GetNumWarnings() : Warnings
- GetOdeSolver() : CellCycleModelOdeHandler
- GetOdeStopTime() : AbstractOdeBasedCellCycleModel, AbstractOdeBasedPhaseBasedCellCycleModel
- GetOdeSystem() : CellCycleModelOdeHandler
- GetOdeSystemAtNode() : LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetOdeTimeStep() : HeartConfig
- GetOffsetNewBoundaryNodes() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetOneDimBoundary() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetOpenMode() : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >, MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetOperation() : EdgeOperation
- GetOperationRecorder() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetOrderOfBoundaryElements() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetOrderOfElements() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetOriginalFactory() : DistributedVectorFactory
- GetOtherElements() : Edge< SPACE_DIM >
- GetOutputCellRearrangementLocations() : VertexBasedCellPopulation< DIM >
- GetOutputCellVelocities() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetOutputDirectory() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >, ColumnDataWriter, HeartConfig
- GetOutputDirectoryFullPath() : OutputFileHandler
- GetOutputDivisionLocations() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetOutputFilenamePrefix() : HeartConfig
- GetOutputGradient() : AbstractPdeModifier< DIM >
- GetOutputResultsForChasteVisualizer() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetOutputScalarData() : AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
- GetOutputUsingOriginalNodeOrdering() : HeartConfig
- GetOutputVariables() : HeartConfig
- GetOutputVariablesProvided() : HeartConfig
- GetOutputVectorData() : AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
- GetOwnership() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetOwnershipRange() : LinearSystem, PetscMatTools, PetscVecTools
- GetOxygenConcentration() : Alarcon2004OxygenBasedCellCycleOdeSystem
- GetParameter() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell, AbstractParameterisedSystem< VECTOR >
- GetParameterIndex() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetParametersFilePath() : HeartConfig
- GetParameterUnits() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetParent() : FileFinder
- GetParticleIndices() : NodeBasedCellPopulationWithParticles< DIM >
- GetPartitionType() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetPde() : AbstractPdeModifier< DIM >
- GetPdeSolutionSize() : AbstractOdeSystemForCoupledPdeSystem
- GetPdeTimeStep() : HeartConfig, PdeSimulationTime
- GetPdeTimeStepInverse() : PdeSimulationTime
- GetPeakPotentials() : CellProperties
- GetPerimeterContractilityParameter() : FarhadifarForce< DIM >
- GetPerimeterGradientOfElementAtNode() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetPeriod() : RegularStimulus
- GetPeriodicWidths() : PeriodicNodesOnlyMesh< SPACE_DIM >
- GetPlanarPolarisedLineTensionMultiplier() : PlanarPolarisedFarhadifarForce< DIM >
- GetPoint() : FluidSource< SPACE_DIM >, Node< SPACE_DIM >
- GetPointData() : VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetPointsAsChastePoints() : SuperellipseGenerator
- GetPointsAsVectors() : SuperellipseGenerator
- GetPolygonDistribution() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetPositionUsingGridIndex() : UniformGridRandomFieldGenerator< SPACE_DIM >
- GetPreviousEdgeGradientOfElementAtNode() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetPrintingTimeStep() : HeartConfig
- GetProblemSize() : DistributedVectorFactory
- GetProcessOwningNode() : DistributedBoxCollection< DIM >
- GetProcessRegion() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetProcessUniqueFilePath() : ArchiveLocationInfo
- GetProperties() : CellPropertyCollection
- GetPropertiesType() : CellPropertyCollection
- GetProperty() : CellPropertyCollection
- GetProteinConcentrations() : CellCycleModelOdeHandler
- GetProtorosetteFormationProbability() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetProtorosetteResolutionProbabilityPerTimestep() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetProvenanceString() : ChasteBuildInfo
- GetPseudoEcgElectrodePositions() : HeartConfig
- GetPurkinjeCapacitance() : HeartConfig
- GetPurkinjeCell() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- GetPurkinjeConductivity() : HeartConfig
- GetPurkinjeSurfaceAreaToVolumeRatio() : HeartConfig
- GetQuadratureRule() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, AbstractCardiacMechanicsSolverInterface< DIM >
- GetQuiescentConcentration() : SimpleOxygenBasedCellCycleModel
- GetQuiescentVolumeFraction() : ContactInhibitionCellCycleModel
- GetRadius() : Node< SPACE_DIM >, NodeAttributes< SPACE_DIM >, RadialSloughingCellKiller
- GetRadiusOfSphere() : SphereGeometryBoundaryCondition< DIM >
- GetRadiusVectorForOneElement() : PapillaryFibreCalculator
- GetRadiusVectors() : PapillaryFibreCalculator
- GetRandomSeed() : CellCycleTimesGenerator
- GetRate() : CellCycleTimesGenerator, ExponentialG1GenerationalCellCycleModel, FixedSequenceCellCycleModel
- GetRawDataFromFile() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetReadContainingElementOfBoundaryElement() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetReceivedCells() : NodeBasedCellPopulation< DIM >
- GetRecvObject() : ObjectCommunicator< CLASS >
- GetReferenceTargetArea() : AbstractTargetAreaModifier< DIM >
- GetRegion() : Node< SPACE_DIM >, NodeAttributes< SPACE_DIM >
- GetRegionsToBeGrounded() : AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >
- GetRelativePath() : FileFinder, OutputFileHandler
- GetRelativeTolerance() : AbstractCvodeSystem, CvodeAdaptor, HeartConfig
- GetReMeshFrequency() : ImmersedBoundaryCellPopulation< DIM >
- GetRemovalsInformation() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetRestingPotentials() : CellProperties
- GetRestLength() : ImmersedBoundaryLinearDifferentialAdhesionForce< DIM >, ImmersedBoundaryLinearInteractionForce< DIM >, ImmersedBoundaryMorseInteractionForce< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetRestrictVertexMovementBoolean() : VertexBasedCellPopulation< DIM >
- GetRevisionNumber() : ChasteBuildInfo
- GetReynoldsNumber() : ImmersedBoundarySimulationModifier< DIM >
- GetRhsVector() : LinearSystem
- GetRhsVectorElement() : LinearSystem
- GetRootDir() : ChasteBuildInfo
- GetRosetteRankOfCell() : VertexBasedCellPopulation< DIM >
- GetRosetteRankOfElement() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetRosetteResolutionProbabilityPerTimestep() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetSamplingAngles() : DiscreteSystemForceCalculator
- GetSamplingMultiple() : ImmersedBoundarySvgWriter< DIM >
- GetSavedProblem() : CardiacSimulation
- GetScale() : GammaG1CellCycleModel
- GetScaleBoundByEdgeLength() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetSDuration() : AbstractPhaseBasedCellCycleModel
- GetSerializationWrapper() : SerializableSingleton< SINGLETON_CLASS >
- GetSG2MDuration() : AbstractPhaseBasedCellCycleModel
- GetShape() : GammaG1CellCycleModel
- GetSheetDimensions() : HeartConfig
- GetSheetNormalTensionFraction() : ElectroMechanicsProblemDefinition< DIM >
- GetSheetTensionFraction() : ElectroMechanicsProblemDefinition< DIM >
- GetShortAxisOfElement() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetShortMessage() : Exception
- GetSimulatedToTime() : AbstractSrnModel
- GetSimulationDuration() : HeartConfig
- GetSimulationModifiers() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetSize() : CellPropertyCollection, ChasteNodesList< SPACE_DIM >, LinearSystem, NodeMap, PetscMatTools, PetscVecTools, ReplicatableVector
- GetSizeOfCellPopulation() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >
- GetSizeOfOdeSystem() : AbstractCellCycleModelOdeSolver
- GetSkewnessOfElementMassDistributionAboutAxis() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetSlabDimensions() : HeartConfig
- GetSloughHeight() : SloughingCellKiller< DIM >
- GetSloughSides() : SloughingCellKiller< DIM >
- GetSloughWidth() : SloughingCellKiller< DIM >
- GetSlowValues() : AbstractCardiacCell
- GetSolution() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, AbstractPdeModifier< DIM >
- GetSolutionDistributedVector() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetSolver() : AbstractCardiacCellInterface
- GetSolverName() : OdeSolution
- GetSolverType() : ElectroMechanicsProblemDefinition< DIM >
- GetSolveUsingSnes() : SolidMechanicsProblemDefinition< DIM >
- GetSpaceDimension() : HeartConfig
- GetSpaceStep() : SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- GetSpacingRatio() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetSpeed() : ExtrinsicPullModifier< DIM >
- GetSplitProportions() : EdgeRemapInfo
- GetSpringConst() : ImmersedBoundaryKinematicFeedbackForce< DIM >, ImmersedBoundaryLinearInteractionForce< DIM >
- GetSrnModel() : Cell
- GetStartOfApoptosisTime() : Cell
- GetStartTime() : RegularStimulus
- GetStateMessage() : AbstractParameterisedSystem< VECTOR >
- GetStateVariable() : AbstractParameterisedSystem< VECTOR >
- GetStateVariableIndex() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetStateVariables() : AbstractParameterisedSystem< VECTOR >
- GetStateVariableUnits() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetStdVecStateVariables() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell
- GetStemCellG1Duration() : AbstractPhaseBasedCellCycleModel
- GetStepSize() : AbstractBoxDomainPdeModifier< DIM >
- GetStiffnessMatrixGlobalIndices() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralElement< 0, SPACE_DIM >
- GetStimuli() : HeartConfig
- GetStimulus() : AbstractCardiacCellInterface, AbstractStimulusFunction, MultiStimulus, PurkinjeVentricularJunctionStimulus, RegularStimulus, RegularStimulusZeroNetCharge, S1S2Stimulus, SimpleStimulus, ZeroStimulus
- GetStimulusFunction() : AbstractCardiacCellInterface
- GetStoppingTime() : AbstractCellCycleModelOdeSolver, AbstractIvpOdeSolver
- GetStrength() : FluidSource< SPACE_DIM >
- GetStretch() : CML_noble_varghese_kohl_noble_1998_basic_with_sac
- GetStringCorrespondingToOption() : CommandLineArguments
- GetStringsCorrespondingToOption() : CommandLineArguments
- GetSubdirectory() : AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
- GetSuggestedNewStep() : StepSizeException
- GetSurfaceArea() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetSurfaceAreaOfElement() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PottsMesh< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetSurfaceAreaOfVoronoiElement() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetSurfaceAreaToVolumeRatio() : HeartConfig
- GetSvgSize() : ImmersedBoundarySvgWriter< DIM >
- GetSwitchingParameter() : RandomCaSwitchingUpdateRule< DIM >
- GetSwitchOffTime() : Electrodes< DIM >
- GetSwitchOnTime() : Electrodes< DIM >
- GetSystemInformation() : AbstractUntemplatedParameterisedSystem
- GetSystemName() : AbstractOdeSystemInformation, AbstractUntemplatedParameterisedSystem
- GetSystemSize() : BackwardEulerIvpOdeSolver
- GetT1SwapsInfo() : VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >
- GetT2SwapsInfo() : VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >
- GetT2Threshold() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetT3SwapsInfo() : VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >
- GetTableIndex() : AbstractLookupTableCollection
- GetTableProperties() : AbstractLookupTableCollection
- GetTargetAreaParameter() : FarhadifarForce< DIM >
- GetTargetIndex() : TargetedCellKiller< DIM >
- GetTargetNodeSpacing() : SuperellipseGenerator
- GetTemperature() : PottsBasedCellPopulation< DIM >
- GetTetrahedralMeshForPdeModifier() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, MeshBasedCellPopulationWithGhostNodes< DIM >, NodeBasedCellPopulation< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
- GetThreshold() : SlidingBoundaryCondition< DIM >
- GetTime() : PdeSimulationTime, SimulationTime, TimeStepper
- GetTimeAtLastCompleteMaxUpstrokeVelocity() : CellProperties
- GetTimeAtLastCompletePeakPotential() : CellProperties
- GetTimeAtLastMaxUpstrokeVelocity() : CellProperties
- GetTimeAtLastPeakPotential() : CellProperties
- GetTimesAtMaxUpstrokeVelocity() : CellProperties
- GetTimesAtPeakPotentials() : CellProperties
- GetTimestep() : AbstractCvodeCell
- GetTimeStep() : OdeLinearSystemSolver, SimulationTime
- GetTimeStepsElapsed() : SimulationTime
- GetTimeUntilDeath() : Cell
- GetTissue() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetTokensAtNextLine() : FibreReader< DIM >
- GetTopologyUpdateSimulationModifiers() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetToroidalMesh() : ToroidalHoneycombMeshGenerator, ToroidalHoneycombVertexMeshGenerator
- GetTortuosityOfMesh() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetTotalEdgeDelta() : DeltaNotchInteriorSrnModel
- GetTotalEdgeNotch() : DeltaNotchInteriorSrnModel
- GetTotalNumQuadPoints() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, AbstractCardiacMechanicsSolverInterface< DIM >
- GetTotalTimeStepsTaken() : TimeStepper
- GetTractionBoundaryConditionType() : ContinuumMechanicsProblemDefinition< DIM >
- GetTransitCellG1Duration() : AbstractPhaseBasedCellCycleModel
- GetType() : WntConcentration< DIM >
- GetUnit() : Hdf5DataReader
- GetUnitHexagon() : ImmersedBoundaryHoneycombMeshGenerator
- GetUnlimitedDimensionName() : AbstractHdf5Access
- GetUnlimitedDimensionUnit() : AbstractHdf5Access
- GetUnlimitedDimensionValues() : ColumnDataReader, Hdf5DataReader
- GetUnsignedAttribute() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetUnsignedCorrespondingToOption() : CommandLineArguments
- GetUnsignedsCorrespondingToOption() : CommandLineArguments
- GetUnused() : EdgeRemapInfo
- GetUpdateCellPopulationRule() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetUpdateNodesInRandomOrder() : AbstractOnLatticeCellPopulation< DIM >
- GetUpdateRuleCollection() : AbstractOnLatticeCellPopulation< DIM >, CaBasedCellPopulation< DIM >
- GetUpstrokeTimeMaps() : HeartConfig
- GetUptakeRateForElement() : AveragedSourceEllipticPde< DIM >, AveragedSourceParabolicPde< DIM >
- GetUseAbsoluteTolerance() : HeartConfig
- GetUseAnalyticJacobian() : AbstractCvodeSystem, AbstractOdeSystem
- GetUseCellProliferativeTypeDependentG1Duration() : SimpleWntCellCycleModel
- GetUseCutOffLength() : AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >
- GetUseFixedNumberIterationsLinearSolver() : HeartConfig
- GetUseJiggledBottomCells() : CryptSimulationBoundaryCondition< DIM >
- GetUseJiggledNodesOnPlane() : PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
- GetUseMassLumping() : HeartConfig
- GetUseMassLumpingForPrecond() : HeartConfig
- GetUseReactionDiffusionOperatorSplitting() : HeartConfig
- GetUseRelativeTolerance() : HeartConfig
- GetUseStateVariableInterpolation() : HeartConfig
- GetUseUpdateNodeLocation() : AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
- GetUseVariableRadii() : NodeBasedCellPopulation< DIM >
- GetUsingCache() : Hdf5DataWriter
- GetValidBathId() : HeartRegionCode
- GetValidTissueId() : HeartRegionCode
- GetValue() : AbstractBoundaryCondition< SPACE_DIM >, ConstBoundaryCondition< SPACE_DIM >, FunctionalBoundaryCondition< SPACE_DIM >, StimulusBoundaryCondition< SPACE_DIM >
- GetValueCorrespondingToOption() : CommandLineArguments
- GetValues() : AbstractDataReader, ColumnDataReader
- GetVariableAtIndex() : OdeSolution
- GetVariableByName() : Hdf5DataWriter
- GetVariableName() : RadialCellDataDistributionWriter< ELEMENT_DIM, SPACE_DIM >
- GetVariableNames() : Hdf5DataReader
- GetVariableOverNodes() : Hdf5DataReader
- GetVariableOverTime() : Hdf5DataReader
- GetVariableOverTimeOverMultipleNodes() : Hdf5DataReader
- GetVectorCellDataForVtkOutput() : AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >, CellAppliedForceWriter< ELEMENT_DIM, SPACE_DIM >
- GetVectorFromAtoB() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >, Cylindrical2dMesh, Cylindrical2dNodesOnlyMesh, Cylindrical2dVertexMesh, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PeriodicNodesOnlyMesh< SPACE_DIM >, Toroidal2dMesh, Toroidal2dVertexMesh, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetVectorIndex() : FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
- GetVerboseDuringSolve() : ContinuumMechanicsProblemDefinition< DIM >
- GetVersionFromNamespace() : HeartConfig
- GetVersionString() : ChasteBuildInfo
- GetVertexBasedDivisionRule() : VertexBasedCellPopulation< DIM >
- GetViscosity() : DiffusionForce< DIM >, StokesFlowProblemDefinition< DIM >
- GetVisualizerOutputPrecision() : HeartConfig
- GetVisualizeWithCmgui() : HeartConfig
- GetVisualizeWithMeshalyzer() : HeartConfig
- GetVisualizeWithParallelVtk() : HeartConfig
- GetVisualizeWithVtk() : HeartConfig
- GetVoltage() : AbstractCardiacCell, AbstractCardiacCellInterface, AbstractCvodeCell
- GetVoltageIndex() : AbstractCardiacCellInterface
- GetVolume() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetVolumeOfCell() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
- GetVolumeOfElement() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, PottsMesh< DIM >, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetVolumeOfVoronoiElement() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetVonNeumannNeighbouringNodeIndices() : PottsMesh< DIM >
- GetVoronoiCellIdsIndexedByNodeIndex() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetVoronoiEdgeLength() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetVoronoiElementIndexCorrespondingToDelaunayNodeIndex() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetVoronoiSurfaceAreaOfElement() : ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >
- GetVoronoiTessellation() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetVtkCellDataName() : AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
- GetVtkVectorCellDataName() : AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
- GetWallTime() : Timer
- GetWeight() : GaussianQuadratureRule< ELEMENT_DIM >
- GetWeightedDirectionForBoundaryElement() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetWeightedDirectionForElement() : NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetWelikyOsterAreaParameter() : WelikyOsterForce< DIM >
- GetWelikyOsterPerimeterParameter() : WelikyOsterForce< DIM >
- GetWellDepth() : ImmersedBoundaryMorseInteractionForce< DIM >
- GetWellWidth() : ImmersedBoundaryMorseInteractionForce< DIM >, ImmersedBoundaryMorseMembraneForce< DIM >
- GetWidth() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractMesh< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ChasteCuboid< SPACE_DIM >, CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >, Cylindrical2dMesh, Cylindrical2dNodesOnlyMesh, Cylindrical2dVertexMesh, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, NodesOnlyMesh< SPACE_DIM >, PeriodicNodesOnlyMesh< SPACE_DIM >, PottsBasedCellPopulation< DIM >, Toroidal2dMesh, Toroidal2dVertexMesh, VertexBasedCellPopulation< DIM >
- GetWithDefault() : ChastePoint< DIM >
- GetWntChemotaxisStrength() : CryptProjectionForce
- GetWntConcentrationParameter() : WntConcentration< DIM >
- GetWntGradient() : WntConcentration< DIM >
- GetWntLabelledThreshold() : SimpleWntCellCycleModel
- GetWntLevel() : AbstractWntOdeBasedCellCycleModel, Mirams2010WntOdeSystem, SimpleWntCellCycleModel, VanLeeuwen2009WntSwatCellCycleOdeSystem, WntCellCycleOdeSystem, WntConcentration< DIM >
- GetWntStemThreshold() : SimpleWntCellCycleModel
- GetWntTransitThreshold() : SimpleWntCellCycleModel
- GetWntType() : SimpleWntCellCycleModel
- GetWorld() : PetscTools
- GetWriteVtkAsPoints() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetX() : Goldbeter1991SrnModel
- GetXsdVersion() : ChasteBuildInfo
- GetZeroedAlpha() : PolynomialMaterialLaw3d
- GetZeroFieldSums() : ImmersedBoundarySimulationModifier< DIM >
- GetZeroStrainPressure() : AbstractIncompressibleMaterialLaw< DIM >, AbstractIsotropicIncompressibleMaterialLaw< DIM >, PoleZeroMaterialLaw< DIM >, SchmidCostaExponentialLaw2d
- GiveUpConvergence() : AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- GmshMeshReader() : GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
- Goldbeter1991OdeSystem() : Goldbeter1991OdeSystem
- Goldbeter1991SrnModel() : Goldbeter1991SrnModel
- GRL1IvpOdeSolver() : GRL1IvpOdeSolver
- GRL2IvpOdeSolver() : GRL2IvpOdeSolver
- GroundSecondElectrode() : ElectrodesStimulusFactory< DIM >