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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <AbstractOdeSystemForCoupledPdeSystem.hpp>
Public Member Functions | |
AbstractOdeSystemForCoupledPdeSystem (unsigned numberOfStateVariables=0, unsigned pdeSolutionSize=0) | |
std::vector< double > & | rGetPdeSolution () |
void | SetPdeSolution (std::vector< double > pdeSolution) |
unsigned | GetPdeSolutionSize () |
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AbstractOdeSystem (unsigned numberOfStateVariables) | |
virtual | ~AbstractOdeSystem () |
virtual void | EvaluateYDerivatives (double time, const std::vector< double > &rY, std::vector< double > &rDY)=0 |
virtual bool | CalculateStoppingEvent (double time, const std::vector< double > &rY) |
virtual double | CalculateRootFunction (double time, const std::vector< double > &rY) |
bool | GetUseAnalyticJacobian () |
const std::vector< double > & | rGetConstStateVariables () const |
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AbstractParameterisedSystem (unsigned numberOfStateVariables) | |
std::vector< double > & | rGetStateVariables () |
std::vector< double > | GetStateVariables () |
void | SetStateVariables (const std::vector< double > &rStateVariables) |
double | GetStateVariable (unsigned index) const |
double | GetStateVariable (const std::string &rName) const |
void | SetStateVariable (unsigned index, double newValue) |
void | SetStateVariable (const std::string &rName, double newValue) |
virtual void | VerifyStateVariables () |
void | SetDefaultInitialConditions (const std::vector< double > &rInitialConditions) |
void | SetDefaultInitialCondition (unsigned index, double initialCondition) |
std::vector< double > | GetInitialConditions () const |
void | ResetToInitialConditions () |
double | GetParameter (unsigned index) const |
double | GetParameter (const std::string &rName) const |
void | SetParameter (const std::string &rName, double value) |
void | SetParameter (unsigned index, double value) |
double | GetAnyVariable (unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) |
double | GetAnyVariable (const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) |
void | SetAnyVariable (unsigned index, double value) |
void | SetAnyVariable (const std::string &rName, double value) |
virtual std::vector< double > | ComputeDerivedQuantities (double time, const std::vector< double > &rState) |
std::vector< double > | ComputeDerivedQuantitiesFromCurrentState (double time) |
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AbstractUntemplatedParameterisedSystem (unsigned numberOfStateVariables) | |
virtual | ~AbstractUntemplatedParameterisedSystem () |
boost::shared_ptr< const AbstractOdeSystemInformation > | GetSystemInformation () const |
std::string | GetSystemName () const |
unsigned | GetNumberOfAttributes () const |
bool | HasAttribute (const std::string &rName) const |
double | GetAttribute (const std::string &rName) const |
unsigned | GetNumberOfStateVariables () const |
const std::vector< std::string > & | rGetStateVariableNames () const |
const std::vector< std::string > & | rGetStateVariableUnits () const |
unsigned | GetStateVariableIndex (const std::string &rName) const |
bool | HasStateVariable (const std::string &rName) const |
std::string | GetStateVariableUnits (unsigned index) const |
unsigned | GetNumberOfParameters () const |
const std::vector< std::string > & | rGetParameterNames () const |
const std::vector< std::string > & | rGetParameterUnits () const |
unsigned | GetParameterIndex (const std::string &rName) const |
bool | HasParameter (const std::string &rName) const |
std::string | GetParameterUnits (unsigned index) const |
unsigned | GetNumberOfDerivedQuantities () const |
const std::vector< std::string > & | rGetDerivedQuantityNames () const |
const std::vector< std::string > & | rGetDerivedQuantityUnits () const |
unsigned | GetDerivedQuantityIndex (const std::string &rName) const |
bool | HasDerivedQuantity (const std::string &rName) const |
std::string | GetDerivedQuantityUnits (unsigned index) const |
unsigned | GetAnyVariableIndex (const std::string &rName) const |
bool | HasAnyVariable (const std::string &rName) const |
std::string | GetAnyVariableUnits (unsigned index) const |
std::string | GetAnyVariableUnits (const std::string &rName) const |
Protected Attributes | |
std::vector< double > | mPdeSolution |
unsigned | mPdeSolutionSize |
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bool | mUseAnalyticJacobian |
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std::vector< double > | mStateVariables |
std::vector< double > | mParameters |
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unsigned | mNumberOfStateVariables |
boost::shared_ptr< AbstractOdeSystemInformation > | mpSystemInfo |
Additional Inherited Members | |
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std::string | DumpState (const std::string &rMessage) |
std::string | DumpState (const std::string &rMessage, std::vector< double > Y) |
std::string | DumpState (const std::string &rMessage, std::vector< double > Y, double time) |
void | CheckParametersOnLoad (const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) |
Represents an ODE system of the form
d/dt (v_j) = g_j(x, u_1, ..., u_p, v_1, ..., v_q), j=1,...,q,
where the variables u_1, ..., u_p are assumed to satisfy a coupled PDE system of the form
d/dt (u_i) = div (D(x) grad (u_i)) + f_i (x, u_1, ..., u_p, v_1, ..., v_q), i=1,...,p.
Such systems may be solved using LinearParabolicPdeSystemWithCoupledOdeSystemSolver.
Definition at line 54 of file AbstractOdeSystemForCoupledPdeSystem.hpp.
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inline |
Constructor.
numberOfStateVariables | the number of state variables in the ODE system (defaults to 0) |
pdeSolutionSize | the size of the PDE solution at a point in space (defaults to 0) |
Definition at line 76 of file AbstractOdeSystemForCoupledPdeSystem.hpp.
References mPdeSolution.
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inline |
Definition at line 109 of file AbstractOdeSystemForCoupledPdeSystem.hpp.
References mPdeSolutionSize.
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inline |
Definition at line 87 of file AbstractOdeSystemForCoupledPdeSystem.hpp.
References mPdeSolution.
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inline |
Set mPdeSolution.
pdeSolution | the PDE solution at a point in space |
Definition at line 97 of file AbstractOdeSystemForCoupledPdeSystem.hpp.
References EXCEPTION, mPdeSolution, and mPdeSolutionSize.
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protected |
Current solution to the PDE problem.
Definition at line 61 of file AbstractOdeSystemForCoupledPdeSystem.hpp.
Referenced by AbstractOdeSystemForCoupledPdeSystem(), OdeSystemForCoupledHeatEquation::EvaluateYDerivatives(), rGetPdeSolution(), and SetPdeSolution().
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protected |
The size of the PDE solution at a point in space.
Definition at line 66 of file AbstractOdeSystemForCoupledPdeSystem.hpp.
Referenced by OdeSystemForCoupledHeatEquation::EvaluateYDerivatives(), GetPdeSolutionSize(), and SetPdeSolution().