#include <AbstractPurkinjeCellFactory.hpp>

Inheritance diagram for AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
void	SetMesh (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)

AbstractCardiacCellInterface *	CreatePurkinjeCellForNode (Node< SPACE_DIM > pNode, AbstractCardiacCellInterface pCardiacCell)

virtual void	FinalisePurkinjeCellCreation (std::vector< AbstractCardiacCellInterface * > *pPurkinjeCellsDistributed, unsigned lo, unsigned hi)

MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM > *	GetMixedDimensionMesh ()

Public Member Functions inherited from AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
virtual AbstractCardiacCellInterface *	CreateCardiacCellForNode (Node< SPACE_DIM > *pNode)

virtual AbstractCardiacCellInterface *	CreateCardiacCellForTissueNode (Node< SPACE_DIM > *pNode)=0

virtual void	FinaliseCellCreation (std::vector< AbstractCardiacCellInterface * > *pCellsDistributed, unsigned lo, unsigned hi)

virtual void	FillInCellularTransmuralAreas ()

virtual unsigned	GetNumberOfCells ()

	AbstractCardiacCellFactory (boost::shared_ptr< AbstractIvpOdeSolver > pSolver=boost::shared_ptr< AbstractIvpOdeSolver >(new EulerIvpOdeSolver))

virtual	~AbstractCardiacCellFactory ()

AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *	GetMesh ()

void	SetHeartGeometryInformation (HeartGeometryInformation< SPACE_DIM > *pHeartGeometryInformation)

HeartGeometryInformation< SPACE_DIM > *	GetHeartGeometryInformation ()

Protected Member Functions
virtual AbstractCardiacCellInterface *	CreatePurkinjeCellForTissueNode (Node< SPACE_DIM > pNode, AbstractCardiacCellInterface pCardiacCell)=0

void	CreateJunction (const Node< SPACE_DIM > pNode, AbstractCardiacCellInterface pPurkinjeCell, AbstractCardiacCellInterface *pCardiacCell, double resistance)

void	CreateJunctionFromFile (const Node< SPACE_DIM > pNode, AbstractCardiacCellInterface pPurkinjeCell, AbstractCardiacCellInterface *pCardiacCell)

Protected Attributes
MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM > *	mpMixedDimensionMesh

std::set< unsigned >	mLocalPurkinjeNodes

std::map< unsigned, double >	mJunctionMap

Protected Attributes inherited from AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
boost::shared_ptr< ZeroStimulus >	mpZeroStimulus

boost::shared_ptr< AbstractIvpOdeSolver >	mpSolver

Private Member Functions
void	ReadJunctionsFile ()

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >

Subclass for also creating cell models for Purkinje cells. The user has to implement the CreatePurkinjeCellForTissueNode() method.

The dimensions should be 2 or 3.

Definition at line 49 of file AbstractPurkinjeCellFactory.hpp.

Constructor & Destructor Documentation

◆ AbstractPurkinjeCellFactory()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >::AbstractPurkinjeCellFactory ( )

Definition at line 44 of file AbstractPurkinjeCellFactory.cpp.

Member Function Documentation

◆ CreateJunction()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >::CreateJunction	(	const Node< SPACE_DIM > *	pNode,
		AbstractCardiacCellInterface *	pPurkinjeCell,
		AbstractCardiacCellInterface *	pCardiacCell,
		double	resistance
	)

protected

Create purkinje-ventricular junction between the two cells provided.

Parameters

pNode	the node in the mesh at which this junction is located
pPurkinjeCell	the Purkinje cell
pCardiacCell	the ventricular cell
resistance	the junction resistance, in kilo-Ohms

Definition at line 119 of file AbstractPurkinjeCellFactory.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetAttribute(), HeartConfig::GetPurkinjeSurfaceAreaToVolumeRatio(), AbstractCardiacCellInterface::GetStimulusFunction(), HeartConfig::Instance(), and AbstractCardiacCellInterface::SetStimulusFunction().

◆ CreateJunctionFromFile()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >::CreateJunctionFromFile	(	const Node< SPACE_DIM > *	pNode,
		AbstractCardiacCellInterface *	pPurkinjeCell,
		AbstractCardiacCellInterface *	pCardiacCell
	)

protected

Create purkinje-ventricular junction between the two cells provided if the junction is defined in the corresponding .pvj file.

ReadJunctionsFile() must be called before calling this method

Parameters

pNode	the node in the mesh at which this junction is located
pPurkinjeCell	the Purkinje cell
pCardiacCell	the ventricular cell

Definition at line 210 of file AbstractPurkinjeCellFactory.cpp.

References Node< SPACE_DIM >::GetIndex().

◆ CreatePurkinjeCellForNode()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractCardiacCellInterface * AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >::CreatePurkinjeCellForNode	(	Node< SPACE_DIM > *	pNode,
		AbstractCardiacCellInterface *	pCardiacCell
	)

Returns: a newly created cell object for the given node.

The default implementation checks whether the node is in a Purkinje node, in which case it calls CreatePurkinjeCellForTissueNode (which must be defined by subclasses), otherwise it returns a pointer to a (unique) fake cell

Parameters

pNode	pointer to node
pCardiacCell	the cardiac cell that has already been created at this node

Definition at line 184 of file AbstractPurkinjeCellFactory.cpp.

References Node< SPACE_DIM >::GetIndex().

Referenced by AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >::AbstractCardiacTissue().

◆ CreatePurkinjeCellForTissueNode()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>

virtual AbstractCardiacCellInterface * AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >::CreatePurkinjeCellForTissueNode	(	Node< SPACE_DIM > *	pNode,
		AbstractCardiacCellInterface *	pCardiacCell
	)

protectedpure virtual

Returns: a newly created purkinje cells for the given node. Must be overridden by subclasses to return a Purkinje cell object for the given node.

Parameters

pNode	pointer to node object
pCardiacCell	the cardiac cell that has already been created at this node

◆ FinalisePurkinjeCellCreation()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>

virtual void AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >::FinalisePurkinjeCellCreation	(	std::vector< AbstractCardiacCellInterface * > *	pPurkinjeCellsDistributed,
		unsigned	lo,
		unsigned	hi
	)