Here is a list of all documented class members with links to the class documentation for each member:

- a -

• A11_matrix_subblock : PCBlockDiagonal::PCBlockDiagonalContext, PCLDUFactorisation::PCLDUFactorisationContext, PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
• A11_scatter_ctx : PCBlockDiagonal::PCBlockDiagonalContext, PCLDUFactorisation::PCLDUFactorisationContext, PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
• A22_B1_matrix_subblock : PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
• A22_B1_scatter_ctx : PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
• A22_B2_matrix_subblock : PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
• A22_B2_scatter_ctx : PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
• A22_matrix_subblock : PCBlockDiagonal::PCBlockDiagonalContext, PCLDUFactorisation::PCLDUFactorisationContext
• A22_scatter_ctx : PCBlockDiagonal::PCBlockDiagonalContext, PCLDUFactorisation::PCLDUFactorisationContext
• a6 : Kerchoffs2003ContractionModel
• a7 : Kerchoffs2003ContractionModel
• Abscissa() : AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >, SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
• Absolute : RelativeTo
• AbsoluteOrCwd : RelativeTo
• AbsoluteStimulus : AbstractUntemplatedConvergenceTester
• AbstractAlgebraicContractionModel() : AbstractAlgebraicContractionModel
• AbstractAssemblerSolverHybrid() : AbstractAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, INTERPOLATION_LEVEL >
• AbstractBackwardEulerCardiacCell() : AbstractBackwardEulerCardiacCell< SIZE >, AbstractBackwardEulerCardiacCell< 0u >
• AbstractBidomainSolver() : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
• AbstractBoundaryCondition() : AbstractBoundaryCondition< SPACE_DIM >
• AbstractBoundaryConditionsContainer() : AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractBoxDomainPdeModifier() : AbstractBoxDomainPdeModifier< DIM >
• AbstractCaBasedDivisionRule() : AbstractCaBasedDivisionRule< SPACE_DIM >
• AbstractCachedMeshReader() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
• AbstractCardiacCell() : AbstractCardiacCell
• AbstractCardiacCellFactory() : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
• AbstractCardiacCellInterface() : AbstractCardiacCellInterface
• AbstractCardiacCellWithModifiers() : AbstractCardiacCellWithModifiers< CARDIAC_CELL >
• AbstractCardiacFeVolumeIntegralAssembler() : AbstractCardiacFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AbstractCardiacMechanicsSolver() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
• AbstractCardiacMechanicsSolverInterface() : AbstractCardiacMechanicsSolverInterface< DIM >
• AbstractCardiacProblem() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractCardiacTissue() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• AbstractCaSwitchingUpdateRule() : AbstractCaSwitchingUpdateRule< DIM >
• AbstractCaUpdateRule() : AbstractCaUpdateRule< DIM >
• AbstractCellBasedSimulation() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• AbstractCellBasedSimulationModifier() : AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM >
• AbstractCellBasedWriter() : AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
• AbstractCellCycleModel() : AbstractCellCycleModel
• AbstractCellCycleModelOdeSolver() : AbstractCellCycleModelOdeSolver
• AbstractCellKiller() : AbstractCellKiller< SPACE_DIM >
• AbstractCellMutationState() : AbstractCellMutationState
• AbstractCellPopulation() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• AbstractCellPopulationBoundaryCondition() : AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
• AbstractCellPopulationCountWriter() : AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >
• AbstractCellPopulationEventWriter() : AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >
• AbstractCellPopulationWriter() : AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >
• AbstractCellProliferativeType() : AbstractCellProliferativeType
• AbstractCellProperty() : AbstractCellProperty
• AbstractCellWriter() : AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
• AbstractCentreBasedCellPopulation() : AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• AbstractCentreBasedDivisionRule() : AbstractCentreBasedDivisionRule< ELEMENT_DIM, SPACE_DIM >
• AbstractChasteRegion() : AbstractChasteRegion< SPACE_DIM >
• AbstractCompressibleMaterialLaw() : AbstractCompressibleMaterialLaw< DIM >
• AbstractContinuumMechanicsAssembler() : AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
• AbstractContinuumMechanicsSolver() : AbstractContinuumMechanicsSolver< DIM >
• AbstractContractionModel() : AbstractContractionModel
• AbstractCorrectionTermAssembler() : AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractCryptStatistics() : AbstractCryptStatistics
• AbstractCvodeCell() : AbstractCvodeCell
• AbstractCvodeCellWithDataClamp() : AbstractCvodeCellWithDataClamp
• AbstractCvodeSystem() : AbstractCvodeSystem
• AbstractDynamicLinearPdeSolver() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractElement() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• AbstractExtendedBidomainSolver() : AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >
• AbstractFeAssemblerCommon() : AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AbstractFeAssemblerInterface() : AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
• AbstractFeCableIntegralAssembler() : AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AbstractFeSurfaceIntegralAssembler() : AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractFeVolumeIntegralAssembler() : AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AbstractFileComparison() : AbstractFileComparison
• AbstractForce() : AbstractForce< ELEMENT_DIM, SPACE_DIM >
• AbstractGeneralizedRushLarsenCardiacCell() : AbstractGeneralizedRushLarsenCardiacCell
• AbstractGrowingDomainPdeModifier() : AbstractGrowingDomainPdeModifier< DIM >
• AbstractHdf5Access() : AbstractHdf5Access
• AbstractHdf5Converter() : AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
• AbstractImmersedBoundaryDivisionRule() : AbstractImmersedBoundaryDivisionRule< SPACE_DIM >
• AbstractImmersedBoundaryForce() : AbstractImmersedBoundaryForce< DIM >
• AbstractIncompressibleMaterialLaw() : AbstractIncompressibleMaterialLaw< DIM >
• AbstractIvpOdeSolver() : AbstractIvpOdeSolver
• AbstractLinearEllipticPde() : AbstractLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >
• AbstractLinearParabolicPde() : AbstractLinearParabolicPde< ELEMENT_DIM, SPACE_DIM >
• AbstractLinearPde() : AbstractLinearPde< ELEMENT_DIM, SPACE_DIM >
• AbstractLinearPdeSolver() : AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractLookupTableCollection() : AbstractLookupTableCollection
• AbstractMaterialLaw() : AbstractMaterialLaw< DIM >
• AbstractMesh() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• AbstractMeshWriter() : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AbstractModifier() : AbstractModifier
• AbstractNonlinearAssemblerSolverHybrid() : AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractNonlinearElasticitySolver() : AbstractNonlinearElasticitySolver< DIM >
• AbstractNumericalMethod() : AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
• AbstractOdeBasedCellCycleModel() : AbstractOdeBasedCellCycleModel
• AbstractOdeBasedContractionModel() : AbstractOdeBasedContractionModel
• AbstractOdeBasedPhaseBasedCellCycleModel() : AbstractOdeBasedPhaseBasedCellCycleModel
• AbstractOdeSrnModel() : AbstractOdeSrnModel
• AbstractOdeSystem() : AbstractOdeSystem
• AbstractOdeSystemForCoupledPdeSystem() : AbstractOdeSystemForCoupledPdeSystem
• AbstractOdeSystemInformation() : AbstractOdeSystemInformation
• AbstractOdeSystemWithAnalyticJacobian() : AbstractOdeSystemWithAnalyticJacobian
• AbstractOffLatticeCellPopulation() : AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
• AbstractOnLatticeCellPopulation() : AbstractOnLatticeCellPopulation< DIM >
• AbstractOutputModifier() : AbstractOutputModifier
• AbstractParameterisedSystem() : AbstractParameterisedSystem< VECTOR >
• AbstractPdeModifier() : AbstractPdeModifier< DIM >
• AbstractPerElementWriter() : AbstractPerElementWriter< ELEMENT_DIM, SPACE_DIM, DATA_SIZE >
• AbstractPhaseBasedCellCycleModel() : AbstractPhaseBasedCellCycleModel
• AbstractPottsUpdateRule() : AbstractPottsUpdateRule< DIM >
• AbstractRushLarsenCardiacCell() : AbstractRushLarsenCardiacCell
• AbstractSimpleCellCycleModel() : AbstractSimpleCellCycleModel
• AbstractSimpleGenerationalCellCycleModel() : AbstractSimpleGenerationalCellCycleModel
• AbstractSimplePhaseBasedCellCycleModel() : AbstractSimplePhaseBasedCellCycleModel
• AbstractSrnModel() : AbstractSrnModel
• abstractsrnmodel_t : CellSrnModel
• AbstractStaticLinearPdeSolver() : AbstractStaticLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractSteadyStateRunner() : AbstractSteadyStateRunner
• AbstractStimulusFactory() : AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >
• AbstractTargetAreaModifier() : AbstractTargetAreaModifier< DIM >
• AbstractTetrahedralElement() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralElement< 0, SPACE_DIM >
• AbstractTetrahedralMesh() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• AbstractTetrahedralMeshWriter() : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AbstractTimeAdaptivityController() : AbstractTimeAdaptivityController
• AbstractTwoBodyInteractionForce() : AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >
• AbstractUntemplatedParameterisedSystem() : AbstractUntemplatedParameterisedSystem
• AbstractUpdateRule() : AbstractUpdateRule< DIM >
• AbstractVanLeeuwen2009WntSwatCellCycleModel() : AbstractVanLeeuwen2009WntSwatCellCycleModel
• AbstractVertexBasedDivisionRule() : AbstractVertexBasedDivisionRule< SPACE_DIM >
• AbstractWntOdeBasedCellCycleModel() : AbstractWntOdeBasedCellCycleModel
• AcceptCellWriter() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
• AcceptCellWritersAcrossPopulation() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, MeshBasedCellPopulationWithGhostNodes< DIM >, NodeBasedCellPopulationWithParticles< DIM >
• AcceptPopulationCountWriter() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
• AcceptPopulationEventWriter() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
• AcceptPopulationWriter() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
• ACh : CorriasBuistSMCModified
• ActivationOutputModifier() : ActivationOutputModifier
• AddActiveStressAndStressDerivative() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >, AbstractNonlinearElasticitySolver< DIM >
• AddAppliedForceContribution() : Node< SPACE_DIM >, NodeAttributes< SPACE_DIM >
• AddAttribute() : ElementAttributes< ELEMENT_DIM, SPACE_DIM >, NodeAttributes< SPACE_DIM >
• AddBoundaryElement() : Node< SPACE_DIM >
• AddCell() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >, ImmersedBoundaryCellPopulation< DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, MeshBasedCellPopulationWithGhostNodes< DIM >, NodeBasedCellPopulation< DIM >, NodeBasedCellPopulationWithParticles< DIM >, PottsBasedCellPopulation< DIM >, VertexBasedCellPopulation< DIM >
• AddCellData() : ImmersedBoundaryMeshWriter< ELEMENT_DIM, SPACE_DIM >, TrapezoidEdgeVertexMeshWriter< ELEMENT_DIM, SPACE_DIM >, VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >, VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AddCellIdOfT2Swap() : VertexBasedCellPopulation< DIM >
• AddCellKiller() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• AddCellPopulationBoundaryCondition() : OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
• AddCellPopulationCountWriter() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• AddCellPopulationEventWriter() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• AddCellProperty() : Cell
• AddCellsToSendLeft() : NodeBasedCellPopulation< DIM >
• AddCellsToSendRight() : NodeBasedCellPopulation< DIM >
• AddCellUsingLocationIndex() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >, CaBasedCellPopulation< DIM >
• AddCellWriter() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• AddCornerNode() : ImmersedBoundaryElement< ELEMENT_DIM, SPACE_DIM >
• AddDataOnNodes() : Hdf5ToXdmfConverter< ELEMENT_DIM, SPACE_DIM >, XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AddDirichletBoundaryCondition() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AddDivisionInformation() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• AddEdgeSrn() : CellSrnModel
• AddEdgeSrnModel() : CellSrnModel
• AddElement() : Box< DIM >, Edge< SPACE_DIM >, MutableMesh< ELEMENT_DIM, SPACE_DIM >, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >, Node< SPACE_DIM >, PottsMesh< DIM >
• AddElementAttribute() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• AddExtraBoundaryNodes() : QuadraticMeshHelper< DIM >
• AddFace() : VertexElement< ELEMENT_DIM, SPACE_DIM >
• AddForce() : OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
• AddForceContribution() : AbstractForce< ELEMENT_DIM, SPACE_DIM >, AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >, BuskeCompressionForce< DIM >, ChemotacticForce< DIM >, CryptProjectionForce, DiffusionForce< DIM >, FarhadifarForce< DIM >, LinearSpringWithVariableSpringConstantsForce< DIM >, NagaiHondaForce< DIM >, PopulationTestingForce< ELEMENT_DIM, SPACE_DIM >, RepulsionForce< DIM >, VertexCryptBoundaryForce< DIM >, WelikyOsterForce< DIM >
• AddHaloCell() : NodeBasedCellPopulation< DIM >
• AddHaloNode() : NodesOnlyMesh< SPACE_DIM >
• AddHaloNodesToBoxes() : NodesOnlyMesh< SPACE_DIM >
• AddIdentityBlockForDummyPressureVariables() : AbstractContinuumMechanicsSolver< DIM >
• AddImmersedBoundaryForce() : ImmersedBoundarySimulationModifier< DIM >
• AddImmersedBoundaryForceContribution() : AbstractImmersedBoundaryForce< DIM >, ImmersedBoundaryKinematicFeedbackForce< DIM >, ImmersedBoundaryLinearDifferentialAdhesionForce< DIM >, ImmersedBoundaryLinearInteractionForce< DIM >, ImmersedBoundaryLinearMembraneForce< DIM >, ImmersedBoundaryMorseInteractionForce< DIM >, ImmersedBoundaryMorseMembraneForce< DIM >
• AddImmersedBoundaryForceContributions() : ImmersedBoundarySimulationModifier< DIM >
• AddInternalNodesToBoundaryElements() : QuadraticMeshHelper< DIM >
• AddInternalNodesToElements() : QuadraticMeshHelper< DIM >
• AddLhsMultipleValues() : LinearSystem
• AddLocationOfT2Swap() : VertexBasedCellPopulation< DIM >
• AddMergedEdgeSrn() : AbstractSrnModel, DeltaNotchEdgeSrnModel
• AddModifier() : AbstractCardiacCellWithModifiers< CARDIAC_CELL >
• AddMovedCell() : NodeBasedCellPopulation< DIM >
• AddMovedNode() : NodesOnlyMesh< SPACE_DIM >
• AddMultipleValues() : PetscMatTools, PetscVecTools
• AddNeighbour() : Node< SPACE_DIM >, NodeAttributes< SPACE_DIM >
• AddNeumannBoundaryCondition() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AddNode() : AbstractElement< ELEMENT_DIM, SPACE_DIM >, AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >, Box< DIM >, Cylindrical2dMesh, Cylindrical2dNodesOnlyMesh, Cylindrical2dVertexMesh, ImmersedBoundaryCellPopulation< DIM >, ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >, MutableMesh< ELEMENT_DIM, SPACE_DIM >, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >, NodeBasedCellPopulation< DIM >, NodesOnlyMesh< SPACE_DIM >, PeriodicNodesOnlyMesh< SPACE_DIM >, PottsElement< DIM >, Toroidal2dMesh, Toroidal2dVertexMesh, VertexBasedCellPopulation< DIM >
• AddNodeAndCellToSendLeft() : NodeBasedCellPopulation< DIM >
• AddNodeAndCellToSendRight() : NodeBasedCellPopulation< DIM >
• AddNodeAttribute() : Node< SPACE_DIM >
• AddNodesToBoundaryElements() : QuadraticMeshHelper< DIM >
• AddNodesToBoxes() : NodesOnlyMesh< SPACE_DIM >
• AddNodeToBoundaryElement() : QuadraticMeshHelper< DIM >
• AddNodeWithFixedIndex() : NodesOnlyMesh< SPACE_DIM >
• AddNormalNoise() : ImmersedBoundarySimulationModifier< DIM >
• AddNormalNoiseToNodes() : AbstractImmersedBoundaryForce< DIM >
• AddOutputModifier() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AddPairsFromBox() : DistributedBoxCollection< DIM >
• AddPeriodicBoundaryCondition() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AddPointData() : ImmersedBoundaryMeshWriter< ELEMENT_DIM, SPACE_DIM >, VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >, VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AddPointToSvgFile() : ImmersedBoundarySvgWriter< DIM >
• AddPopulationWriter() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• AddProperty() : CellPropertyCollection
• AddProvenance() : VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AddReceivedCells() : NodeBasedCellPopulation< DIM >
• AddReceivedHaloCells() : NodeBasedCellPopulation< DIM >
• AddRemovalInformation() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• AddRhsMultipleValues() : LinearSystem
• AddScaledVector() : PetscVecTools
• AddShrunkEdgeSrn() : AbstractSrnModel, DeltaNotchEdgeSrnModel
• AddShrunkEdgeToInterior() : AbstractSrnModel, DeltaNotchInteriorSrnModel
• AddSimulationModifier() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• AddSrnQuantities() : AbstractSrnModel, DeltaNotchEdgeSrnModel
• AddStimulus() : MultiStimulus
• AddStressToAverageStressPerElement() : AbstractNonlinearElasticitySolver< DIM >
• AddTensorCellData() : VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AddTensorPointData() : VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AddToElement() : PetscMatTools, PetscVecTools
• AddToMatrixElement() : LinearSystem
• AddTopologyUpdateSimulationModifier() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• AddToRhsVectorElement() : LinearSystem
• AddTrailingSlash() : OutputFileHandler
• AddUpdateRule() : AbstractOnLatticeCellPopulation< DIM >, CaBasedCellPopulation< DIM >, OnLatticeSimulation< DIM >, PottsBasedCellPopulation< DIM >
• AddWarning() : Warnings
• AdhesionPottsUpdateRule() : AdhesionPottsUpdateRule< DIM >
• AdjustOdeParameters() : AbstractVanLeeuwen2009WntSwatCellCycleModel, Alarcon2004OxygenBasedCellCycleModel, CellCycleModelOdeHandler, SingleOdeWntCellCycleModel, WntCellCycleModel
• AdjustOutOfRangeSlowValues() : AbstractCardiacCell
• AdjustStepSize() : RungeKuttaFehlbergIvpOdeSolver
• AdvanceAlongUnlimitedDimension() : AbstractDataWriter, ColumnDataWriter, Hdf5DataWriter, ParallelColumnDataWriter
• AdvanceOneTimeStep() : TimeStepper
• Alarcon2004OxygenBasedCellCycleModel() : Alarcon2004OxygenBasedCellCycleModel
• Alarcon2004OxygenBasedCellCycleOdeSystem() : Alarcon2004OxygenBasedCellCycleOdeSystem
• AllocateMatrixMemory() : AbstractContinuumMechanicsSolver< DIM >
• alpha() : boost::random::gamma_distribution_v165< RealType >, boost::random::gamma_distribution_v165< RealType >::param_type
• AlwaysDivideCellCycleModel() : AlwaysDivideCellCycleModel
• AmMaster() : PetscTools
• AmTopMost() : PetscTools
• AnalyseMeshForBath() : BidomainProblem< DIM >, ExtendedBidomainProblem< DIM >
• AnalyticJacobian() : AbstractOdeSystemWithAnalyticJacobian, TysonNovak2001OdeSystem
• AnyNonZeroNeumannConditions() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApcOneHitCellMutationState() : ApcOneHitCellMutationState
• ApcTwoHitCellMutationState() : ApcTwoHitCellMutationState
• Apd90FirstQn : AbstractUntemplatedConvergenceTester
• Apd90ThirdQn : AbstractUntemplatedConvergenceTester
• ApoptoticCellKiller() : ApoptoticCellKiller< SPACE_DIM >
• ApoptoticCellProperty() : ApoptoticCellProperty
• AppendLocalDataToFiles() : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >, CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >, MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
• ApplyBoundaries() : OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
• ApplyDirichletBoundaryConditions() : AbstractContinuumMechanicsSolver< DIM >
• ApplyDirichletConditions() : AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyDirichletToLinearProblem() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyDirichletToNonlinearJacobian() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyDirichletToNonlinearResidual() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyGhostForces() : MeshBasedCellPopulationWithGhostNodes< DIM >
• ApplyPeriodicBcsToLinearProblem() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyPermutation() : Hdf5DataWriter
• ArchiveOpener() : ArchiveOpener< Archive, Stream >
• AreBcsSetOnBoxBoundary() : AbstractBoxDomainPdeModifier< DIM >
• AreCellularTransmuralHeterogeneitiesRequested() : HeartConfig
• AreCryptSectionCellsLabelled() : AbstractCryptStatistics
• Assemble() : AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
• AssembleFinalLinearSystem() : LinearSystem
• AssembleIntermediateLinearSystem() : LinearSystem
• AssembleMatrix() : AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
• AssembleOnBoundaryElement() : AbstractNonlinearElasticitySolver< DIM >, ContinuumMechanicsNeumannBcsAssembler< DIM >
• AssembleOnBoundaryElementForPressureOnDeformedBc() : AbstractNonlinearElasticitySolver< DIM >
• AssembleOnCableElement() : AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AssembleOnElement() : AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >, AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >, CompressibleNonlinearElasticitySolver< DIM >, IncompressibleNonlinearElasticitySolver< DIM >
• AssembleOnSurfaceElement() : AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AssembleSystem() : AbstractNonlinearElasticitySolver< DIM >, CompressibleNonlinearElasticitySolver< DIM >, IncompressibleNonlinearElasticitySolver< DIM >, StokesFlowSolver< DIM >
• AssembleVector() : AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
• AssignCellId() : CellId
• Asurf : CorriasBuistICCModified, CorriasBuistSMCModified
• Asurf_in_cm_square : CorriasBuistICCModified, CorriasBuistSMCModified
• AtBeginningOfTimestep() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, BidomainProblem< DIM >
• AttributeValue : ElementData, ImmersedBoundaryElementData, PottsElementData, VertexElementData
• AugmentCellData() : VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AveragedSourceEllipticPde() : AveragedSourceEllipticPde< DIM >
• AveragedSourceParabolicPde() : AveragedSourceParabolicPde< DIM >
• averageNodeSpacing : ImmersedBoundaryElementData
• AxisymmetricConductivityTensors() : AxisymmetricConductivityTensors< ELEMENT_DIM, SPACE_DIM >