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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <CompressibleNonlinearElasticitySolver.hpp>
Public Member Functions | |
CompressibleNonlinearElasticitySolver (AbstractTetrahedralMesh< DIM, DIM > &rQuadMesh, SolidMechanicsProblemDefinition< DIM > &rProblemDefinition, std::string outputDirectory) | |
virtual | ~CompressibleNonlinearElasticitySolver () |
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void | ComputeResidual (Vec currentGuess, Vec residualVector) |
void | ComputeJacobian (Vec currentGuess, Mat *pJacobian, Mat *pPreconditioner) |
AbstractNonlinearElasticitySolver (AbstractTetrahedralMesh< DIM, DIM > &rQuadMesh, SolidMechanicsProblemDefinition< DIM > &rProblemDefinition, std::string outputDirectory, CompressibilityType compressibilityType) | |
virtual | ~AbstractNonlinearElasticitySolver () |
void | Solve (double tol=-1.0) |
void | SetIncludeActiveTension (bool includeActiveTension=true) |
unsigned | GetNumNewtonIterations () |
void | SetWriteOutputEachNewtonIteration (bool writeOutputEachNewtonIteration=true) |
void | SetKspAbsoluteTolerance (double kspAbsoluteTolerance) |
void | SetTakeFullFirstNewtonStep (bool takeFullFirstStep=true) |
void | SetUsePetscDirectSolve (bool usePetscDirectSolve=true) |
void | SetCurrentTime (double time) |
void | CreateCmguiOutput () |
void | WriteCurrentStrains (StrainType strainType, std::string fileName, int counterToAppend=-1) |
void | SetComputeAverageStressPerElementDuringSolve (bool setComputeAverageStressPerElement=true) |
void | WriteCurrentAverageElementStresses (std::string fileName, int counterToAppend=-1) |
std::vector< c_vector< double, DIM > > & | rGetSpatialSolution () |
std::vector< c_vector< double, DIM > > & | rGetDeformedPosition () |
c_matrix< double, DIM, DIM > | GetAverageStressPerElement (unsigned elementIndex) |
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AbstractContinuumMechanicsSolver (AbstractTetrahedralMesh< DIM, DIM > &rQuadMesh, ContinuumMechanicsProblemDefinition< DIM > &rProblemDefinition, std::string outputDirectory, CompressibilityType compressibilityType) | |
virtual | ~AbstractContinuumMechanicsSolver () |
void | WriteCurrentSpatialSolution (std::string fileName, std::string fileExtension, int counterToAppend=-1) |
void | WriteCurrentPressureSolution (int counterToAppend=-1) |
void | SetWriteOutput (bool writeOutput=true) |
void | CreateVtkOutput (std::string spatialSolutionName="Spatial solution") |
std::vector< double > & | rGetCurrentSolution () |
std::vector< double > & | rGetPressures () |
Protected Member Functions | |
virtual void | AssembleOnElement (Element< DIM, DIM > &rElement, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElem, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElemPrecond, c_vector< double, STENCIL_SIZE > &rBElem, bool assembleResidual, bool assembleJacobian) |
void | AssembleSystem (bool assembleResidual, bool assembleJacobian) |
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void | AddStressToAverageStressPerElement (c_matrix< double, DIM, DIM > &rT, unsigned elementIndex) |
virtual void | SetKspSolverAndPcType (KSP solver) |
virtual void | FinishAssembleSystem (bool assembleResidual, bool assembleLinearSystem) |
void | GetElementCentroidStrain (StrainType strainType, Element< DIM, DIM > &rElement, c_matrix< double, DIM, DIM > &rDeformationGradient) |
virtual void | AddActiveStressAndStressDerivative (c_matrix< double, DIM, DIM > &rC, unsigned elementIndex, unsigned currentQuadPointGlobalIndex, c_matrix< double, DIM, DIM > &rT, FourthOrderTensor< DIM, DIM, DIM, DIM > &rDTdE, bool addToDTdE) |
virtual void | SetupChangeOfBasisMatrix (unsigned elementIndex, unsigned currentQuadPointGlobalIndex) |
void | AssembleOnBoundaryElement (BoundaryElement< DIM-1, DIM > &rBoundaryElement, c_matrix< double, BOUNDARY_STENCIL_SIZE, BOUNDARY_STENCIL_SIZE > &rAelem, c_vector< double, BOUNDARY_STENCIL_SIZE > &rBelem, bool assembleResidual, bool assembleJacobian, unsigned boundaryConditionIndex) |
bool | ShouldAssembleMatrixTermForPressureOnDeformedBc () |
void | AssembleOnBoundaryElementForPressureOnDeformedBc (BoundaryElement< DIM-1, DIM > &rBoundaryElement, c_matrix< double, BOUNDARY_STENCIL_SIZE, BOUNDARY_STENCIL_SIZE > &rAelem, c_vector< double, BOUNDARY_STENCIL_SIZE > &rBelem, bool assembleResidual, bool assembleJacobian, unsigned boundaryConditionIndex) |
double | ComputeResidualAndGetNorm (bool allowException) |
double | CalculateResidualNorm () |
void | VectorSum (std::vector< double > &rX, ReplicatableVector &rY, double a, std::vector< double > &rZ) |
void | PrintLineSearchResult (double s, double residNorm) |
double | TakeNewtonStep () |
double | UpdateSolutionUsingLineSearch (Vec solution) |
virtual void | PostNewtonStep (unsigned counter, double normResidual) |
void | SolveNonSnes (double tol=-1.0) |
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void | AllocateMatrixMemory () |
void | ApplyDirichletBoundaryConditions (ApplyDirichletBcsType type, bool symmetricProblem) |
void | AddIdentityBlockForDummyPressureVariables (ApplyDirichletBcsType type) |
void | RemovePressureDummyValuesThroughLinearInterpolation () |
Static Protected Attributes | |
static const size_t | NUM_NODES_PER_ELEMENT = AbstractNonlinearElasticitySolver<DIM>::NUM_NODES_PER_ELEMENT |
static const size_t | NUM_VERTICES_PER_ELEMENT = AbstractNonlinearElasticitySolver<DIM>::NUM_VERTICES_PER_ELEMENT |
static const size_t | NUM_NODES_PER_BOUNDARY_ELEMENT = AbstractNonlinearElasticitySolver<DIM>::NUM_NODES_PER_BOUNDARY_ELEMENT |
static const size_t | STENCIL_SIZE = DIM*NUM_NODES_PER_ELEMENT |
static const size_t | BOUNDARY_STENCIL_SIZE = DIM*NUM_NODES_PER_BOUNDARY_ELEMENT |
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static const size_t | NUM_VERTICES_PER_ELEMENT = DIM+1 |
static const size_t | NUM_NODES_PER_ELEMENT = (DIM+1)*(DIM+2)/2 |
static const size_t | NUM_NODES_PER_BOUNDARY_ELEMENT = DIM*(DIM+1)/2 |
static const size_t | BOUNDARY_STENCIL_SIZE = DIM*NUM_NODES_PER_BOUNDARY_ELEMENT |
static double | MAX_NEWTON_ABS_TOL = 1e-7 |
static double | MIN_NEWTON_ABS_TOL = 1e-10 |
static double | NEWTON_REL_TOL = 1e-4 |
Friends | |
class | TestCompressibleNonlinearElasticitySolver |
class | TestStressRecoveror |
Finite elasticity solver. Solves static *compressible* nonlinear elasticity problems with arbitrary (compressible) material laws and a body force.
Uses quadratic basis functions for displacement, and is therefore outside the other assembler or solver hierarchy.
Definition at line 64 of file CompressibleNonlinearElasticitySolver.hpp.
CompressibleNonlinearElasticitySolver< DIM >::CompressibleNonlinearElasticitySolver | ( | AbstractTetrahedralMesh< DIM, DIM > & | rQuadMesh, |
SolidMechanicsProblemDefinition< DIM > & | rProblemDefinition, | ||
std::string | outputDirectory | ||
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Constructor
rQuadMesh | The quadratic mesh to solve on |
rProblemDefinition | an object defining in particular the body force and boundary conditions |
outputDirectory | The output directory |
Definition at line 458 of file CompressibleNonlinearElasticitySolver.cpp.
References EXCEPTION, and SolidMechanicsProblemDefinition< DIM >::GetCompressibilityType().
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Destructor.
Definition at line 473 of file CompressibleNonlinearElasticitySolver.cpp.
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Assemble residual or Jacobian on an element, using the current solution stored in mCurrrentSolution. The ordering assumed is (in 2d) rBElem = [u0 v0 u1 v1 .. u5 v5].
rElement | The element to assemble on. |
rAElem | The element's contribution to the LHS matrix is returned in this n by n matrix, where n is the no. of nodes in this element. There is no need to zero this matrix before calling. |
rAElemPrecond | The element's contribution to the matrix passed to PetSC in creating a preconditioner |
rBElem | The element's contribution to the RHS vector is returned in this vector of length n, the no. of nodes in this element. There is no need to zero this vector before calling. |
assembleResidual | A bool stating whether to assemble the residual vector. |
assembleJacobian | A bool stating whether to assemble the Jacobian matrix. |
Definition at line 175 of file CompressibleNonlinearElasticitySolver.cpp.
References LinearBasisFunction< ELEMENT_DIM >::ComputeBasisFunctions(), QuadraticBasisFunction< ELEMENT_DIM >::ComputeBasisFunctions(), AbstractMaterialLaw< DIM >::ComputeStressAndStressDerivative(), QuadraticBasisFunction< ELEMENT_DIM >::ComputeTransformedBasisFunctionDerivatives(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), Inverse(), NEVER_REACHED, and AbstractMaterialLaw< DIM >::SetChangeOfBasisMatrix().
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Assemble the residual vector (using the current solution stored in mCurrentSolution, output going to mpLinearSystem->rGetRhsVector), or Jacobian matrix (using the current solution stored in mCurrentSolution, output going to mpLinearSystem->rGetLhsMatrix).
assembleResidual | A bool stating whether to assemble the residual vector. |
assembleJacobian | A bool stating whether to assemble the Jacobian matrix. |
Implements AbstractNonlinearElasticitySolver< DIM >.
Definition at line 54 of file CompressibleNonlinearElasticitySolver.cpp.
References PetscVecTools::Finalise(), PetscTools::GetMyRank(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetOwnership(), CommandLineArguments::Instance(), CommandLineArguments::OptionExists(), PetscMatTools::Zero(), and PetscVecTools::Zero().
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Definition at line 66 of file CompressibleNonlinearElasticitySolver.hpp.
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Definition at line 67 of file CompressibleNonlinearElasticitySolver.hpp.
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Boundary stencil size.
Definition at line 87 of file CompressibleNonlinearElasticitySolver.hpp.
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Number of nodes per boundary element.
Definition at line 78 of file CompressibleNonlinearElasticitySolver.hpp.
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Number of nodes per element.
Definition at line 72 of file CompressibleNonlinearElasticitySolver.hpp.
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Number of vertices per element.
Definition at line 75 of file CompressibleNonlinearElasticitySolver.hpp.
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Stencil size - number of unknowns per element (DIM*NUM_NODES_PER_ELEMENT displacement unknowns, no pressure unknowns.
Definition at line 84 of file CompressibleNonlinearElasticitySolver.hpp.