Chaste Commit::cb13711ecd95ea07ee692b4f17422a5733a769bc
Class Index
A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z
A
AbstractAlgebraicContractionModel
AbstractAssemblerSolverHybrid
AbstractBackwardEulerCardiacCell
AbstractBackwardEulerCardiacCell< 0u >
AbstractBidomainSolver
AbstractBoundaryCondition
AbstractBoundaryConditionsContainer
AbstractBoxDomainPdeModifier
AbstractCaBasedDivisionRule
AbstractCachedMeshReader
AbstractCardiacCell
AbstractCardiacCellFactory
AbstractCardiacCellInterface
AbstractCardiacCellWithModifiers
AbstractCardiacFeVolumeIntegralAssembler
AbstractCardiacMechanicsSolver
AbstractCardiacMechanicsSolverInterface
AbstractCardiacProblem
AbstractCardiacTissue
AbstractCaSwitchingUpdateRule
AbstractCaUpdateRule
AbstractCellBasedSimulation
AbstractCellBasedSimulationModifier
AbstractCellBasedTestSuite
AbstractCellBasedWithTimingsTestSuite
AbstractCellBasedWriter
AbstractCellCycleModel
AbstractCellCycleModelOdeSolver
AbstractCellKiller
AbstractCellMutationState
AbstractCellPopulation
AbstractCellPopulationBoundaryCondition
AbstractCellPopulationCountWriter
AbstractCellPopulationEventWriter
AbstractCellPopulationWriter
AbstractCellProliferativeType
AbstractCellProperty
AbstractCellWriter
AbstractCentreBasedCellPopulation
AbstractCentreBasedDivisionRule
AbstractChasteRegion
AbstractCompressibleMaterialLaw
AbstractConductivityModifier
AbstractConductivityTensors
AbstractContinuumMechanicsAssembler
AbstractContinuumMechanicsSolver
AbstractContractionCellFactory
AbstractContractionModel
AbstractConvergenceTester
AbstractCorrectionTermAssembler
AbstractCryptStatistics
AbstractCvodeCell
AbstractCvodeCellWithDataClamp
AbstractCvodeSystem
AbstractDataReader
AbstractDataWriter
AbstractDynamicallyLoadableEntity
AbstractDynamicLinearPdeSolver
AbstractElement
AbstractExtendedBidomainSolver
AbstractFeAssemblerCommon
AbstractFeAssemblerInterface
AbstractFeCableIntegralAssembler
AbstractFeSurfaceIntegralAssembler
AbstractFeVolumeIntegralAssembler
AbstractFileComparison
AbstractForce
AbstractFunctionalCalculator
AbstractGeneralizedRushLarsenCardiacCell
AbstractGrowingDomainPdeModifier
AbstractHdf5Access
AbstractHdf5Converter
AbstractImmersedBoundaryDivisionRule
AbstractImmersedBoundaryForce
AbstractIncompressibleMaterialLaw
AbstractIsotropicCompressibleMaterialLaw
AbstractIsotropicIncompressibleMaterialLaw
AbstractIvpOdeSolver
AbstractLinearEllipticPde
AbstractLinearParabolicPde
AbstractLinearParabolicPdeSystemForCoupledOdeSystem
AbstractLinearPde
AbstractLinearPdeSolver
AbstractLookupTableCollection
AbstractMaterialLaw
AbstractMesh
AbstractMeshReader
AbstractMeshWriter
AbstractModifier
AbstractNonlinearAssemblerSolverHybrid
AbstractNonlinearElasticitySolver
AbstractNonlinearEllipticPde
AbstractNonlinearSolver
AbstractNumericalMethod
AbstractOdeBasedCellCycleModel
AbstractOdeBasedContractionModel
AbstractOdeBasedPhaseBasedCellCycleModel
AbstractOdeSrnModel
AbstractOdeSystem
AbstractOdeSystemForCoupledPdeSystem
AbstractOdeSystemInformation
AbstractOdeSystemWithAnalyticJacobian
AbstractOffLatticeCellPopulation
AbstractOneStepIvpOdeSolver
AbstractOnLatticeCellPopulation
AbstractOutputModifier
AbstractParameterisedSystem
AbstractPdeModifier
AbstractPerElementWriter
AbstractPhaseBasedCellCycleModel
AbstractPottsUpdateRule
AbstractPurkinjeCellFactory
AbstractRushLarsenCardiacCell
AbstractSimpleCellCycleModel
AbstractSimpleGenerationalCellCycleModel
AbstractSimplePhaseBasedCellCycleModel
AbstractSrnModel
AbstractStaticLinearPdeSolver
AbstractSteadyStateRunner
AbstractStimulusFactory
AbstractStimulusFunction
AbstractTargetAreaModifier
AbstractTetrahedralElement
AbstractTetrahedralElement< 0, SPACE_DIM >
AbstractTetrahedralMesh
AbstractTetrahedralMeshWriter
AbstractTimeAdaptivityController
AbstractTwoBodyInteractionForce
AbstractUntemplatedCardiacProblem
AbstractUntemplatedConvergenceTester
AbstractUntemplatedParameterisedSystem
AbstractUpdateRule
AbstractVanLeeuwen2009WntSwatCellCycleModel
AbstractVertexBasedDivisionRule
AbstractWntOdeBasedCellCycleModel
ActivationOutputModifier
AdhesionPottsUpdateRule
Alarcon2004OxygenBasedCellCycleModel
Alarcon2004OxygenBasedCellCycleOdeSystem
AlwaysDivideCellCycleModel
ApcOneHitCellMutationState
ApcTwoHitCellMutationState
ApoptoticCellKiller
ApoptoticCellProperty
ArchiveLocationInfo
ArchiveOpener
AveragedSourceEllipticPde
AveragedSourceParabolicPde
AxisymmetricConductivityTensors
B
BackwardEulerIvpOdeSolver
badsubseg
badtriang
BathCellFactory
behavior
BernoulliTrialCellCycleModel
BetaCateninOneHitCellMutationState
BiasedBernoulliTrialCellCycleModel
BidomainAssembler
BidomainCorrectionTermAssembler
BidomainMassMatrixAssembler
BidomainNeumannSurfaceTermAssembler
BidomainProblem
BidomainSolver
BidomainTissue
BidomainWithBathAssembler
BidomainWithBathProblem
BoundaryConditionsContainer
BoundaryElement
BoundaryNodeWriter
Box
BuskeAdhesiveForce
BuskeCompressionForce
BuskeElasticForce
C
CaBasedCellPopulation
CARDIAC_CELL
CardiacElectroMechanicsProblem
CardiacElectroMechProbRegularGeom
CardiacNewtonSolver
CardiacSimulation
CardiacSimulationArchiver
Cell
CellAgesWriter
CellAncestor
CellAncestorWriter
CellAppliedForceWriter
CellBasedEllipticPdeSolver
CellBasedEventHandler
CellBasedParabolicPdeSolver
CellBasedSimulationArchiver
CellBetaCateninWriter
CellCycleModelOdeHandler
CellCycleModelOdeSolver
CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >
CellCycleModelProteinConcentrationsWriter
CellCycleTimesGenerator
CellData
CellDataItemWriter
CellDeltaNotchWriter
CellDivisionInfo
CellDivisionLocationsWriter
CellEdgeData
CellId
CellIdWriter
CellLabel
CellLabelWriter
CellLocationIndexWriter
CellMLLoader
CellMLToSharedLibraryConverter
CellMutationStatesCountWriter
CellMutationStatesWriter
CellPopulationAdjacencyMatrixWriter
CellPopulationAreaWriter
CellPopulationElementWriter
CellProliferativePhasesCountWriter
CellProliferativePhasesWriter
CellProliferativeTypesCountWriter
CellProliferativeTypesWriter
CellProperties
CellPropertyCollection
CellPropertyRegistry
CellRadiusWriter
CellRemovalLocationsWriter
CellRosetteRankWriter
CellsGenerator
CellSrnModel
CellVecData
CellVolumesWriter
CellwiseDataGradient
CellwiseOdeSystemInformation
CellwiseSourceEllipticPde
CellwiseSourceParabolicPde
ChasteBuildInfo
ChasteCuboid
ChasteEllipsoid
ChasteNodesList
ChastePoint
ChastePoint< 0 >
ChastePosixPathFixer
ChemotacticForce
ChemotaxisPottsUpdateRule
DistributedVector::Chunk
Citations
CmguiDeformedSolutionsWriter
CmguiMeshWriter
CML_noble_varghese_kohl_noble_1998_basic_with_sac
ColumnDataReader
ColumnDataWriter
CombinedOdeSystem
CombinedOdeSystemInformation
CommandLineArguments
CommandLineArgumentsMocker
CompareDoubles
CompressibleExponentialLaw
CompressibleMooneyRivlinMaterialLaw
CompressibleNonlinearElasticitySolver
ConstantActiveTension
ConstBoundaryCondition
ContactInhibitionCellCycleModel
Node::ContainingBoundaryElementIterator
Node::ContainingElementIterator
ContinuumMechanicsNeumannBcsAssembler
ContinuumMechanicsProblemDefinition
ContractionModelInputParameters_
CorriasBuistICCModified
CorriasBuistSMCModified
CreateElectricsProblem
CreateElectricsProblem< DIM, 1u >
CreateElectricsProblem< DIM, 2u >
CryptCellsGenerator
CryptCentreBasedDivisionRule
CryptProjectionForce
CryptProjectionStatistics
CryptShovingCaBasedDivisionRule
CryptSimulation1d
CryptSimulation2d
CryptSimulationBoundaryCondition
CryptStatistics
CryptVertexBasedDivisionRule
CuboidMeshConstructor
CvodeAdaptor
CvodeData_
Cylindrical2dMesh
Cylindrical2dNodesOnlyMesh
Cylindrical2dVertexMesh
CylindricalHoneycombMeshGenerator
CylindricalHoneycombVertexMeshGenerator
D
DataAtQuadraturePoint_
DataWriterVariable
DefaultCellProliferativeType
DeltaNotchEdgeInteriorTrackingModifier
DeltaNotchEdgeOdeSystem
DeltaNotchEdgeSrnModel
DeltaNotchEdgeTrackingModifier
DeltaNotchInteriorOdeSystem
DeltaNotchInteriorSrnModel
DeltaNotchOdeSystem
DeltaNotchSrnModel
DeltaNotchTrackingModifier
DifferentialAdhesionGeneralisedLinearSpringForce
DifferentialAdhesionPottsUpdateRule
DifferentiatedCellProliferativeType
DiffusionCaUpdateRule
DiffusionForce
DiscreteSystemForceCalculator
DistanceMapCalculator
DistributedBoxCollection
DistributedQuadraticMesh
DistributedTetrahedralMesh
DistributedTetrahedralMeshPartitionType
DistributedVector
DistributedVectorException
DistributedVectorFactory
DivisionBiasTrackingModifier
DummyModifier
DynamicCellModelLoader
DynamicModelLoaderRegistry
E
Edge
EdgeHelper
TetrahedralMesh::EdgeIterator
EdgeOperation
EdgeRemapInfo
ELASTICITY_SOLVER
Electrodes
ElectrodesStimulusFactory
ElectroMechanicsProblemDefinition
Element
ElementAndWeights
ElementAttributes
ElementData
AbstractMeshReader::ElementIterator
AbstractTetrahedralMesh::ElementIterator
EllipticBoxDomainPdeModifier
EllipticGrowingDomainPdeModifier
EulerIvpOdeSolver
event
AbstractLookupTableCollection::EventHandler
Exception
ExclusionCaBasedDivisionRule
ExecutableSupport
ExplicitCardiacMechanicsSolver
exponential_distribution_v165 (boost::random)
exponential_table (boost::random::detail)
ExponentialG1GenerationalCellCycleModel
ExponentialMaterialLaw
ExtendedBidomainAssembler
ExtendedBidomainMassMatrixAssembler
ExtendedBidomainNeumannSurfaceTermAssembler
ExtendedBidomainProblem
ExtendedBidomainSolver
ExtendedBidomainTissue
ExtrinsicPullModifier
F
FactorModifier
FakeBathCell
FakeBathContractionModel
FarhadifarForce
FemlabMeshReader
FibreConverter
FibreReader
FibreWriter
FileComparison
FileFinder
XmlTools::Finalizer
FineCoarseMeshPair
FitzHughNagumo1961OdeSystem
FixedCentreBasedDivisionRule
FixedG1GenerationalCellCycleModel
FixedModifier
FixedSequenceCellCycleModel
FixedVertexBasedDivisionRule
flipstacker
FluidSource
ForwardEulerNumericalMethod
FourthOrderTensor
FunctionalBoundaryCondition
G
gamma_distribution_v165 (boost::random)
GammaG1CellCycleModel
GaussianQuadratureRule
GeneralisedLinearSpringForce
GeneralPlaneStimulusCellFactory
GenericEventHandler
GmshMeshReader
GmshTypes
Goldbeter1991OdeSystem
Goldbeter1991SrnModel
OpenSimplex2S::Grad2
OpenSimplex2S::Grad3
OpenSimplex2S::Grad4
GRL1IvpOdeSolver
GRL2IvpOdeSolver
H
Hdf5DataReader
Hdf5DataWriter
Hdf5ToCmguiConverter
Hdf5ToMeshalyzerConverter
Hdf5ToTxtConverter
Hdf5ToVtkConverter
Hdf5ToXdmfConverter
HeartConfig
HeartConfigRelatedCellFactory
HeartEventHandler
HeartFileFinder
HeartGeometryInformation
HeartRegionCode
HeterotypicBoundaryLengthWriter
HeunIvpOdeSolver
HoneycombMeshGenerator
HoneycombVertexMeshGenerator
I
Identifiable
ImmersedBoundary2dArrays
ImmersedBoundaryBoundaryCellWriter
ImmersedBoundaryCellPopulation
ImmersedBoundaryElement
ImmersedBoundaryElement< 1, SPACE_DIM >
ImmersedBoundaryElementData
ImmersedBoundaryMesh::ImmersedBoundaryElementIterator
ImmersedBoundaryFftInterface
ImmersedBoundaryHoneycombMeshGenerator
ImmersedBoundaryKinematicFeedbackForce
ImmersedBoundaryMesh::ImmersedBoundaryLaminaIterator
ImmersedBoundaryLinearDifferentialAdhesionForce
ImmersedBoundaryLinearInteractionForce
ImmersedBoundaryLinearMembraneForce
ImmersedBoundaryMesh
ImmersedBoundaryMeshReader
ImmersedBoundaryMeshWriter
ImmersedBoundaryMorseInteractionForce
ImmersedBoundaryMorseMembraneForce
ImmersedBoundaryNeighbourNumberWriter
ImmersedBoundaryPalisadeMeshGenerator
ImmersedBoundarySimulationModifier
ImmersedBoundarySvgWriter
ImplicitCardiacMechanicsSolver
IncompressibleNonlinearElasticitySolver
OpenSimplex2S::Initializer
CombinedOdeSystemInformation::InstancePointers
IsolatedLabelledCellKiller
DistributedVector::Iterator
AbstractCellPopulation::Iterator
K
Kerchoffs2003ContractionModel
L
LabelBasedContractionCellFactory
LabelDependentBernoulliTrialCellCycleModel
OpenSimplex2S::LatticePoint2D
OpenSimplex2S::LatticePoint3D
OpenSimplex2S::LatticePoint4D
LegacyCellProliferativeTypesWriter
LessThanNode
LinearBasisFunction
LinearBasisFunction< 0 >
LinearParabolicPdeSystemWithCoupledOdeSystemSolver
LinearSpringWithVariableSpringConstantsForce
LinearSystem
LogFile
LuoRudySpiralWaveCellFactory
M
MassMatrixAssembler
MechanicsEventHandler
MemfemMeshReader
memorypool
mesh
MeshalyzerMeshWriter
MeshBasedCellPopulation
MeshBasedCellPopulationWithGhostNodes
MeshEventHandler
MeshPottsWriterIterators
MeshWriterIterators
Mirams2010WntOdeSystem
MixedDimensionMesh
MockEulerIvpOdeSolver
MonodomainAssembler
MonodomainCorrectionTermAssembler
MonodomainProblem
MonodomainPurkinjeCableAssembler
MonodomainPurkinjeCableMassMatrixAssembler
MonodomainPurkinjeProblem
MonodomainPurkinjeSolver
MonodomainPurkinjeVolumeAssembler
MonodomainPurkinjeVolumeMassMatrixAssembler
MonodomainSolver
MonodomainStiffnessMatrixAssembler
MonodomainTissue
MooneyRivlinMaterialLaw
MultiStimulus
MutableElement
MutableElement< 1, SPACE_DIM >
MutableMesh
MutableVertexMesh
N
NagaiHondaDifferentialAdhesionForce
NagaiHondaForce
Nash2004ContractionModel
NashHunterPoleZeroLaw
NaturalNeumannSurfaceTermAssembler
NhsContractionModel
NhsModelWithBackwardSolver
NoCellCycleModel
Node
NodeAttributes
NodeBasedCellPopulation
NodeBasedCellPopulationWithBuskeUpdate
NodeBasedCellPopulationWithParticles
AbstractMeshReader::NodeIterator
AbstractMesh::NodeIterator
NodeLocationWriter
NodeMap
NodePartitioner
NodesOnlyMesh
NodeVelocityWriter
NonCachedTetrahedralMesh
NonlinearElasticityTools
NonPhysiologicalContractionModel
normal_distribution_v165 (boost::random)
normal_table_v165 (boost::random::detail)
NormallyDistributedTargetAreaModifier
null_deleter
NullSrnModel
NumericFileComparison
O
ObjectCommunicator
ObsoleteBoxCollection
OdeConvergenceTester
OdeLinearSystemSolver
OdePdeConvergenceTester
OdeSolution
OdeSystemForCoupledHeatEquation
OdeSystemForCoupledHeatEquationWithSource
OdeSystemInformation
OffLatticeRandomFieldGenerator
OffLatticeSimulation
OnLatticeSimulation
OpenSimplex2S
OperatorSplittingMonodomainSolver
OrthotropicConductivityTensors
osub
otri
OutputDirectoryFifoQueue
OutputFileHandler
P
pack
pack< void(T)>
PapillaryFibreCalculator
ParabolicBoxDomainPdeModifier
ParabolicGrowingDomainPdeModifier
ParallelCellsGenerator
ParallelColumnDataWriter
gamma_distribution_v165::param_type (boost::random)
exponential_distribution_v165::param_type (boost::random)
normal_distribution_v165::param_type (boost::random)
PCBlockDiagonal
PCBlockDiagonal::PCBlockDiagonalContext
PCLDUFactorisation
PCLDUFactorisation::PCLDUFactorisationContext
PCTwoLevelsBlockDiagonal
PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
PdeConvergenceTester
PdeSimulationTime
PeriodicNodesOnlyMesh
PetscMatTools
PetscSetup
PetscSetupUtils
PetscTools
PetscVecTools
PlanarPolarisedFarhadifarForce
PlaneBasedCellKiller
PlaneBoundaryCondition
PlaneStimulusCellFactory
PoleZeroMaterialLaw
PolynomialMaterialLaw3d
PopulationTestingForce
PostProcessingWriter
PottsBasedCellPopulation
PottsElement
PottsElementData
PottsMesh::PottsElementIterator
PottsMesh
PottsMeshGenerator
PottsMeshReader
PottsMeshWriter
ProcessSpecificArchive
ProgressReporter
PropagationPropertiesCalculator
PseudoEcgCalculator
PurkinjeVentricularJunctionStimulus
Q
QuadraticBasisFunction
QuadraticBasisFunction< 0 >
QuadraticMesh
QuadraticMeshHelper
QuadraturePointsGroup
R
RadialCellDataDistributionWriter
RadialSloughingCellKiller
RampedQuarterStimulusCellFactory
RandomCaSwitchingUpdateRule
RandomCellKiller
RandomDirectionCentreBasedDivisionRule
RandomDirectionVertexBasedDivisionRule
RandomNumberGenerator
RegularStimulus
RegularStimulusZeroNetCharge
RelativeTo
ReplicatableVector
RepulsionForce
RKC21IvpOdeSolver
RungeKutta2IvpOdeSolver
RungeKutta4IvpOdeSolver
RungeKuttaFehlbergIvpOdeSolver
S
S1S2Stimulus
SchmidCostaExponentialLaw2d
SerializableSingleton
ShortAxisImmersedBoundaryDivisionRule
ShortAxisVertexBasedDivisionRule
ShovingCaBasedDivisionRule
SimpleDataWriter
SimpleLinearEllipticSolver
SimpleLinearParabolicSolver
SimpleNewtonNonlinearSolver
SimpleNonlinearEllipticSolver
SimpleOxygenBasedCellCycleModel
SimplePetscNonlinearSolver
SimpleStimulus
SimpleTargetAreaModifier
SimpleWntCellCycleModel
SimulationTime
SingleOdeWntCellCycleModel
SingleTraceOutputModifier
SlidingBoundaryCondition
SloughingCellKiller
SolidMechanicsProblemDefinition
SpaceConvergenceTester
SphereGeometryBoundaryCondition
splaynode
MeshBasedCellPopulation::SpringIterator
SteadyStateRestitutionStimulus
SteadyStateRunner
StemCellProliferativeType
StepSizeException
StiffnessMatrixAssembler
StimulusBoundaryCondition
StochasticOxygenBasedCellCycleModel
StochasticWntCellCycleModel
StokesFlowAssembler
StokesFlowPreconditionerAssembler
StokesFlowProblemDefinition
StokesFlowSolver
StreeterFibreGenerator
StressPerElementWriter
StressRecoveror
DistributedVector::Stripe
SuperellipseGenerator
SurfaceAreaConstraintPottsUpdateRule
T
T1SwapInfo
T2SwapCellKiller
T2SwapInfo
T3SwapInfo
TargetAreaLinearGrowthModifier
TargetedCellKiller
TetrahedralMesh
TimeModifier
Timer
TimeStepper
Toroidal2dMesh
Toroidal2dVertexMesh
ToroidalHoneycombMeshGenerator
ToroidalHoneycombVertexMeshGenerator
TransitCellProliferativeType
TrapezoidEdgeVertexMeshWriter
TrianglesMeshReader
TrianglesMeshWriter
TysonNovak2001OdeSystem
TysonNovakCellCycleModel
U
UniformCellCycleModel
UniformG1GenerationalCellCycleModel
UniformGridRandomFieldGenerator
UniformSourceEllipticPde
UniformSourceParabolicPde
unit_exponential_distribution (boost::random::detail)
unit_normal_distribution_v165 (boost::random::detail)
V
VanLeeuwen2009WntSwatCellCycleModelHypothesisOne
VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo
VanLeeuwen2009WntSwatCellCycleOdeSystem
CombinedOdeSystem::VariableParameterMap
version< AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > > (boost::serialization)
version< AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > > (boost::serialization)
version< AbstractChasteRegion< SPACE_DIM > > (boost::serialization)
version< AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > > (boost::serialization)
VertexBasedCellPopulation
VertexBasedPopulationSrn
VertexCryptBoundaryForce
VertexElement
VertexElement< 1, SPACE_DIM >
VertexElementData
VertexMesh::VertexElementIterator
VertexElementMap
VertexIntersectionSwapLocationsWriter
VertexMesh
VertexMeshOperationRecorder
VertexMeshReader
VertexMeshWriter
VertexT1SwapLocationsWriter
VertexT2SwapLocationsWriter
VertexT3SwapLocationsWriter
VoltageInterpolaterOntoMechanicsMesh
VolumeConstraintPottsUpdateRule
VolumeDependentAveragedSourceEllipticPde
VolumeTrackingModifier
VonMisesVertexBasedDivisionRule
VoronoiDataWriter
VoronoiVertexMeshGenerator
VtkMeshReader
VtkMeshWriter
VtkNonlinearElasticitySolutionWriter
W
Warnings
WelikyOsterForce
WildTypeCellMutationState
WntCellCycleModel
WntCellCycleOdeSystem
WntConcentration
X
XdmfMeshWriter
XmlTools
XmlTransforms
Z
ZeroNetChargeElectrodes
ZeroStimulus
ZeroStimulusCellFactory