Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
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#include <DeltaNotchEdgeInteriorTrackingModifier.hpp>
Public Member Functions | |
DeltaNotchEdgeInteriorTrackingModifier () | |
virtual | ~DeltaNotchEdgeInteriorTrackingModifier () |
virtual void | UpdateAtEndOfTimeStep (AbstractCellPopulation< DIM, DIM > &rCellPopulation) |
virtual void | SetupSolve (AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory) |
void | UpdateCellData (AbstractCellPopulation< DIM, DIM > &rCellPopulation) |
void | OutputSimulationModifierParameters (out_stream &rParamsFile) |
Public Member Functions inherited from AbstractCellBasedSimulationModifier< DIM, DIM > | |
AbstractCellBasedSimulationModifier () | |
virtual | ~AbstractCellBasedSimulationModifier () |
virtual void | UpdateAtEndOfTimeStep (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)=0 |
virtual void | UpdateAtEndOfOutputTimeStep (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation) |
virtual void | SetupSolve (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, std::string outputDirectory)=0 |
virtual void | UpdateAtEndOfSolve (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation) |
void | OutputSimulationModifierInfo (out_stream &rParamsFile) |
Public Member Functions inherited from Identifiable | |
virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
A modifier class in which the mean levels of Delta in neighbouring cells are computed and stored in CellData. To be used in conjunction with Delta Notch cell cycle models.
Definition at line 51 of file DeltaNotchEdgeInteriorTrackingModifier.hpp.
DeltaNotchEdgeInteriorTrackingModifier< DIM >::DeltaNotchEdgeInteriorTrackingModifier | ( | ) |
Default constructor.
Definition at line 42 of file DeltaNotchEdgeInteriorTrackingModifier.cpp.
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virtual |
Destructor.
Definition at line 48 of file DeltaNotchEdgeInteriorTrackingModifier.cpp.
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virtual |
Overridden OutputSimulationModifierParameters() method. Output any simulation modifier parameters to file.
rParamsFile | the file stream to which the parameters are output |
Implements AbstractCellBasedSimulationModifier< DIM, DIM >.
Definition at line 157 of file DeltaNotchEdgeInteriorTrackingModifier.cpp.
References AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM >::OutputSimulationModifierParameters().
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inlineprivate |
Boost Serialization method for archiving/checkpointing. Archives the object and its member variables.
archive | The boost archive. |
version | The current version of this class. |
Definition at line 63 of file DeltaNotchEdgeInteriorTrackingModifier.hpp.
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virtual |
Overridden SetupSolve() method.
Specifies what to do in the simulation before the start of the time loop.
rCellPopulation | reference to the cell population |
outputDirectory | the output directory, relative to where Chaste output is stored |
Definition at line 59 of file DeltaNotchEdgeInteriorTrackingModifier.cpp.
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virtual |
Overridden UpdateAtEndOfTimeStep() method.
Specifies what to do in the simulation at the end of each time step.
rCellPopulation | reference to the cell population |
Definition at line 53 of file DeltaNotchEdgeInteriorTrackingModifier.cpp.
void DeltaNotchEdgeInteriorTrackingModifier< DIM >::UpdateCellData | ( | AbstractCellPopulation< DIM, DIM > & | rCellPopulation | ) |
Helper method to compute the mean level of Delta in each cell's neighbours and store these in the CellData.
Note: If using a CaBasedCellPopulation, we assume a Moore neighbourhood and unit carrying capacity. If a cell has no neighbours (such as an isolated cell in a CaBasedCellPopulation), we store the value -1 in the CellData.
rCellPopulation | reference to the cell population |
Definition at line 69 of file DeltaNotchEdgeInteriorTrackingModifier.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Begin(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::End(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellUsingLocationIndex(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringEdgeIndices(), and CellSrnModel::GetNumEdgeSrn().
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friend |
Needed for serialization.
Definition at line 54 of file DeltaNotchEdgeInteriorTrackingModifier.hpp.